Wall clock time and date at job start Fri Apr 10 2020 14:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99814 * 2 1 4 4 C 1.53010 * 109.46867 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46989 * 63.56302 * 4 3 2 6 6 C 1.37095 * 119.99851 * 266.26775 * 5 4 3 7 7 H 1.08007 * 120.00319 * 142.48545 * 6 5 4 8 8 C 1.38949 * 120.00196 * 322.48236 * 6 5 4 9 9 N 1.31415 * 120.00195 * 160.73714 * 8 6 5 10 10 Si 1.86808 * 119.99925 * 340.74219 * 8 6 5 11 11 H 1.48494 * 109.47216 * 95.23539 * 10 8 6 12 12 H 1.48501 * 109.47046 * 215.23686 * 10 8 6 13 13 H 1.48501 * 109.46636 * 335.23465 * 10 8 6 14 14 C 1.34775 * 120.00273 * 86.26473 * 5 4 3 15 15 O 1.21294 * 119.99927 * 0.02562 * 14 5 4 16 16 C 1.50697 * 120.00204 * 179.97438 * 14 5 4 17 17 N 1.46495 * 109.47008 * 180.02562 * 16 14 5 18 18 N 1.40163 * 126.21229 * 270.01935 * 17 16 14 19 19 C 1.31263 * 107.89307 * 180.02562 * 18 17 16 20 20 C 1.41788 * 132.01472 * 180.02562 * 19 18 17 21 21 C 1.35524 * 119.32905 * 179.97438 * 20 19 18 22 22 C 1.40999 * 119.85862 * 359.97438 * 21 20 19 23 23 C 1.34459 * 120.59702 * 0.02562 * 22 21 20 24 24 N 1.37467 * 120.68082 * 359.97438 * 23 22 21 25 25 C 1.34823 * 131.79883 * 180.02562 * 24 23 22 26 26 O 1.21890 * 126.06028 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.46792 * 60.00654 * 1 2 3 28 28 H 1.09003 * 109.46830 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47053 * 300.00441 * 1 2 3 30 30 H 1.08994 * 109.47591 * 59.99855 * 3 2 1 31 31 H 1.08996 * 109.47056 * 299.99418 * 3 2 1 32 32 H 1.08999 * 109.46628 * 303.55955 * 4 3 2 33 33 H 1.09000 * 109.46657 * 183.56088 * 4 3 2 34 34 H 0.97004 * 119.99616 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.46960 * 60.00198 * 16 14 5 36 36 H 1.09006 * 109.46935 * 300.00315 * 16 14 5 37 37 H 1.07998 * 120.33876 * 359.94577 * 20 19 18 38 38 H 1.08002 * 120.07273 * 179.72258 * 21 20 19 39 39 H 1.08002 * 119.70366 * 179.97438 * 22 21 20 40 40 H 1.08005 * 119.65471 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9743 0.5328 -1.2358 6 6 4.1691 -0.8239 -1.2636 7 1 3.8981 -1.3906 -2.1423 8 6 4.7152 -1.4701 -0.1614 9 7 4.5615 -2.7673 -0.0174 10 14 5.6679 -0.4950 1.1158 11 1 4.7622 -0.1251 2.2329 12 1 6.7854 -1.3220 1.6376 13 1 6.2133 0.7373 0.4919 14 6 4.1863 1.2669 -2.3460 15 8 4.0143 2.4674 -2.3213 16 6 4.6381 0.5965 -3.6178 17 7 4.7969 1.6028 -4.6705 18 7 3.8078 2.0232 -5.5701 19 6 4.3366 2.9330 -6.3548 20 6 3.8006 3.6874 -7.4290 21 6 4.5926 4.5768 -8.0758 22 6 5.9345 4.7425 -7.6757 23 6 6.4383 4.0249 -6.6564 24 7 5.6559 3.1163 -5.9841 25 6 5.9216 2.2930 -4.9500 26 8 6.9891 2.1903 -4.3706 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8524 0.5898 0.8573 33 1 3.9786 2.1785 0.0645 34 1 4.9432 -3.2184 0.7519 35 1 3.8937 -0.1376 -3.9258 36 1 5.5917 0.0970 -3.4462 37 1 2.7718 3.5542 -7.7291 38 1 4.1980 5.1545 -8.8986 39 1 6.5635 5.4517 -8.1931 40 1 7.4681 4.1644 -6.3623 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457184173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:56 Heat of formation + Delta-G solvation = 4.882197 kcal Electronic energy + Delta-G solvation = -27314.222067 eV Core-core repulsion = 23325.403228 eV Total energy + Delta-G solvation = -3988.818840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.05420 -40.97220 -39.42726 -38.67275 -38.13276 -36.80182 -34.85063 -34.03317 -33.67572 -31.54829 -30.13746 -29.01890 -27.28922 -26.75098 -25.24153 -24.11921 -23.92434 -22.95707 -21.10425 -19.52280 -19.31828 -18.67399 -18.29412 -17.84709 -17.61027 -17.39182 -17.01231 -16.57027 -16.41288 -16.15803 -15.90909 -15.71771 -15.66101 -15.28800 -14.62044 -14.57846 -14.39296 -13.82050 -13.67190 -13.51184 -13.22044 -13.13033 -13.02992 -12.96780 -12.64487 -12.61776 -12.46255 -12.02535 -11.76400 -11.57060 -11.56154 -11.29314 -10.95915 -10.58874 -10.30263 -9.85696 -8.73974 -8.50665 -6.13008 -0.36660 0.43846 0.57785 1.14437 1.27422 1.33175 1.38449 1.66344 1.88031 2.16091 2.44578 2.48466 2.84773 3.01506 3.05013 3.69324 3.82759 3.86490 4.03064 4.05209 4.10883 4.15234 4.23727 4.26897 4.31381 4.45119 4.51934 4.55508 4.69022 4.71482 4.76867 4.82583 4.99415 5.12199 5.28493 5.33906 5.43588 5.71975 5.99148 6.15780 6.33762 6.37987 6.69231 6.89719 7.27739 7.60981 8.62981 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.003963 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.180340 B = 7063.522983 C = 7909.924500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.063 3.937 4 C 0.093 3.907 5 N -0.453 5.453 6 C -0.336 4.336 7 H 0.090 0.910 8 C 0.043 3.957 9 N -0.886 5.886 10 Si 0.919 3.081 11 H -0.256 1.256 12 H -0.282 1.282 13 H -0.275 1.275 14 C 0.459 3.541 15 O -0.614 6.614 16 C 0.165 3.835 17 N -0.418 5.418 18 N -0.319 5.319 19 C 0.285 3.715 20 C -0.139 4.139 21 C -0.019 4.019 22 C -0.152 4.152 23 C 0.082 3.918 24 N -0.481 5.481 25 C 0.631 3.369 26 O -0.584 6.584 27 H 0.040 0.960 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.280 0.720 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.179 0.821 38 H 0.201 0.799 39 H 0.202 0.798 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 14.223 -14.612 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.015 4.015 4 C -0.030 4.030 5 N -0.173 5.173 6 C -0.463 4.463 7 H 0.107 0.893 8 C -0.162 4.162 9 N -0.522 5.522 10 Si 0.746 3.254 11 H -0.182 1.182 12 H -0.208 1.208 13 H -0.200 1.200 14 C 0.248 3.752 15 O -0.501 6.501 16 C 0.041 3.959 17 N -0.234 5.234 18 N -0.145 5.145 19 C 0.021 3.979 20 C -0.161 4.161 21 C -0.043 4.043 22 C -0.173 4.173 23 C -0.035 4.035 24 N -0.196 5.196 25 C 0.331 3.669 26 O -0.460 6.460 27 H 0.059 0.941 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.197 0.803 38 H 0.218 0.782 39 H 0.219 0.781 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.875 13.608 -13.587 19.443 hybrid contribution 0.952 0.193 1.200 1.544 sum -1.924 13.800 -12.387 18.643 Atomic orbital electron populations 1.22879 0.80338 1.03307 1.00410 1.88138 1.20731 1.27225 1.95350 1.22737 0.92878 0.85275 1.00597 1.21897 0.94560 0.98238 0.88272 1.43653 1.57700 1.07392 1.08534 1.18898 1.42472 0.80121 1.04856 0.89278 1.25677 0.95983 0.95804 0.98772 1.69788 1.41891 1.10080 1.30462 0.86274 0.79327 0.79323 0.80492 1.18195 1.20810 1.19980 1.20873 0.80788 0.86653 0.86928 1.90529 1.58088 1.15559 1.85880 1.21108 1.05704 0.86922 0.82125 1.48457 1.07771 1.37224 1.29926 1.77675 1.12970 1.18407 1.05497 1.22445 0.81656 0.96101 0.97673 1.20744 1.03536 0.98273 0.93512 1.21831 0.92030 0.93071 0.97391 1.21450 0.97685 1.01482 0.96709 1.22320 0.97640 0.89592 0.93978 1.43589 1.13353 1.34126 1.28506 1.16728 0.85543 0.82268 0.82344 1.91044 1.25926 1.71603 1.57477 0.94105 0.89180 0.92541 0.90292 0.94141 0.91075 0.89744 0.91049 0.85037 0.86040 0.80321 0.78214 0.78122 0.80830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -16.94 10.30 -148.98 -1.53 -18.47 16 3 C 0.06 2.52 6.27 71.99 0.45 2.97 16 4 C 0.09 4.27 4.42 86.38 0.38 4.66 16 5 N -0.45 -22.91 2.15 -635.53 -1.37 -24.27 16 6 C -0.34 -18.03 8.74 84.04 0.73 -17.29 16 7 H 0.09 4.97 7.23 -2.91 -0.02 4.95 16 8 C 0.04 2.33 5.34 84.93 0.45 2.79 16 9 N -0.89 -49.85 13.96 21.66 0.30 -49.55 16 10 Si 0.92 43.48 24.82 68.60 1.70 45.18 16 11 H -0.26 -11.30 6.70 99.48 0.67 -10.64 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.27 -13.52 7.10 99.48 0.71 -12.81 16 14 C 0.46 23.25 7.68 87.66 0.67 23.92 16 15 O -0.61 -33.45 16.07 -3.07 -0.05 -33.50 16 16 C 0.17 7.47 5.54 85.63 0.47 7.94 16 17 N -0.42 -18.28 3.11 -481.79 -1.50 -19.78 16 18 N -0.32 -12.33 12.62 -54.73 -0.69 -13.02 16 19 C 0.29 8.68 7.87 134.32 1.06 9.74 16 20 C -0.14 -2.39 10.12 22.52 0.23 -2.16 16 21 C -0.02 -0.17 10.06 22.32 0.22 0.06 16 22 C -0.15 -1.55 9.97 22.08 0.22 -1.33 16 23 C 0.08 1.71 10.90 82.94 0.90 2.61 16 24 N -0.48 -15.66 2.93 -482.32 -1.41 -17.07 16 25 C 0.63 27.29 8.70 179.01 1.56 28.84 16 26 O -0.58 -28.62 17.86 -4.96 -0.09 -28.71 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 3.33 3.21 -2.39 -0.01 3.32 16 33 H 0.08 3.78 7.54 -2.39 -0.02 3.77 16 34 H 0.28 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.13 5.50 7.66 -2.39 -0.02 5.48 16 36 H 0.12 5.50 8.05 -2.38 -0.02 5.48 16 37 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.20 -0.27 8.06 -2.91 -0.02 -0.30 16 39 H 0.20 0.18 8.06 -2.91 -0.02 0.15 16 40 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -83.63 346.29 5.01 -78.62 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.04 Total: 15.74 kcal Atomic # 6 Polarization: 56.22 SS G_CDS: 8.61 Total: 64.83 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -4.66 Total: -123.69 kcal Atomic # 8 Polarization: -79.01 SS G_CDS: -1.67 Total: -80.68 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.70 Total: 45.18 kcal Total: -83.63 5.01 -78.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.499 kcal (2) G-P(sol) polarization free energy of solvation -83.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds