Wall clock time and date at job start Fri Apr 10 2020 14:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99891 * 2 1 4 4 O 1.20825 * 119.99886 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00082 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47455 * 179.97438 * 5 3 2 7 7 C 1.36906 * 120.00285 * 269.99893 * 6 5 3 8 8 H 1.08004 * 119.99779 * 18.29887 * 7 6 5 9 9 C 1.39019 * 120.00554 * 198.29541 * 7 6 5 10 10 N 1.31388 * 119.99584 * 15.87400 * 9 7 6 11 11 Si 1.86791 * 120.00204 * 195.88184 * 9 7 6 12 12 H 1.48496 * 109.47583 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47573 * 119.99656 * 11 9 7 14 14 H 1.48503 * 109.47015 * 239.99679 * 11 9 7 15 15 C 1.34778 * 120.00160 * 89.99634 * 6 5 3 16 16 O 1.21631 * 120.00398 * 242.68029 * 15 6 5 17 17 C 1.47341 * 119.99724 * 62.67349 * 15 6 5 18 18 C 1.39822 * 120.99923 * 21.61003 * 17 15 6 19 19 N 1.32203 * 118.98997 * 179.97438 * 18 17 15 20 20 C 1.31971 * 121.19864 * 0.02562 * 19 18 17 21 21 C 1.50701 * 118.87633 * 179.97438 * 20 19 18 22 22 C 1.53006 * 117.50016 * 300.00065 * 21 20 19 23 23 C 1.53003 * 60.03178 * 107.47910 * 22 21 20 24 24 N 1.31687 * 122.24279 * 0.28021 * 20 19 18 25 25 C 1.32970 * 120.84679 * 359.43785 * 24 20 19 26 26 N 1.37885 * 120.63931 * 180.25441 * 25 24 20 27 27 H 1.09006 * 109.47162 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47169 * 300.00005 * 1 2 3 29 29 H 1.08997 * 109.47485 * 60.00160 * 1 2 3 30 30 H 1.09010 * 109.47221 * 59.99547 * 5 3 2 31 31 H 1.09006 * 109.47026 * 299.99872 * 5 3 2 32 32 H 0.96994 * 119.99990 * 184.95291 * 10 9 7 33 33 H 1.07994 * 120.50685 * 0.02562 * 18 17 15 34 34 H 1.08997 * 115.54576 * 154.33157 * 21 20 19 35 35 H 1.08996 * 117.49476 * 214.98252 * 22 21 20 36 36 H 1.08997 * 117.49636 * 359.97438 * 22 21 20 37 37 H 1.08991 * 117.50059 * 107.50082 * 23 22 21 38 38 H 1.09003 * 117.49740 * 252.52535 * 23 22 21 39 39 H 0.96993 * 119.99932 * 190.14543 * 26 25 24 40 40 H 0.97006 * 119.99910 * 10.15052 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1754 3.3359 -1.1869 8 1 3.7519 2.9404 -2.0984 9 6 4.9170 4.5114 -1.2180 10 7 5.6852 4.8304 -0.2009 11 14 4.8213 5.6372 -2.7054 12 1 3.8925 5.0556 -3.7076 13 1 4.3239 6.9718 -2.2851 14 1 6.1717 5.7790 -3.3066 15 6 4.1731 3.3263 1.1659 16 8 3.4807 4.2849 1.4509 17 6 5.2211 2.8719 2.0965 18 6 6.2986 2.1023 1.6474 19 7 7.2168 1.7163 2.5168 20 6 7.1312 2.0441 3.7923 21 6 8.2070 1.5755 4.7379 22 6 8.4162 0.0664 4.8780 23 6 9.4453 0.9142 4.1277 24 7 6.1347 2.7617 4.2679 25 6 5.1672 3.1997 3.4677 26 7 4.1285 3.9552 3.9694 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.9557 0.7809 -0.8909 31 1 3.9564 0.7806 0.8892 32 1 6.1465 5.6836 -0.1905 33 1 6.3801 1.8280 0.6061 34 1 8.3499 2.1882 5.6280 35 1 8.6971 -0.3137 5.8601 36 1 7.7755 -0.5876 4.2865 37 1 10.4033 1.0919 4.6162 38 1 9.4814 0.8184 3.0425 39 1 3.3556 4.1456 3.4152 40 1 4.1708 4.2962 4.8766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597274876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:26 Heat of formation + Delta-G solvation = -12.474442 kcal Electronic energy + Delta-G solvation = -27597.027632 eV Core-core repulsion = 23607.456152 eV Total energy + Delta-G solvation = -3989.571480 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58382 -39.87818 -38.36809 -36.83262 -35.94460 -35.08893 -34.12482 -32.23343 -31.85058 -29.85101 -28.52230 -26.44314 -25.67371 -24.13192 -23.18764 -22.20236 -21.29257 -20.70537 -19.71470 -17.77550 -17.36445 -17.10678 -16.92699 -16.45182 -15.95608 -15.56540 -15.22902 -15.08365 -14.78066 -14.38062 -14.15969 -13.98710 -13.73771 -13.18822 -13.08576 -12.95749 -11.99820 -11.89394 -11.76404 -11.68108 -11.45391 -11.36183 -11.29550 -11.02468 -10.92283 -10.60657 -10.44765 -10.40926 -10.33278 -10.24008 -10.04030 -9.19639 -9.16824 -8.69769 -8.60544 -7.72628 -7.64941 -6.29518 -3.74259 1.32611 1.99941 2.81215 3.04327 3.22735 3.34192 3.36381 3.58587 3.81533 4.01077 4.21923 4.42432 4.57626 4.73126 4.86045 5.03484 5.14434 5.22361 5.29296 5.31355 5.36007 5.37765 5.54323 5.63831 5.71449 5.71710 5.87426 5.89235 5.95423 6.16848 6.19073 6.31697 6.39367 6.82255 6.95878 7.38378 7.44127 7.72151 7.87956 8.18764 8.35605 8.79396 8.85845 9.05422 9.31221 9.74992 10.82769 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.005321 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.547843 B = 5260.414193 C = 6678.734355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.372 6.372 3 C 0.421 3.579 4 O -0.481 6.481 5 C 0.144 3.856 6 N -0.526 5.526 7 C -0.294 4.294 8 H 0.086 0.914 9 C 0.032 3.968 10 N -0.877 5.877 11 Si 0.921 3.079 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.641 3.359 16 O -0.514 6.514 17 C -0.269 4.269 18 C 0.233 3.767 19 N -0.569 5.569 20 C 0.385 3.615 21 C -0.096 4.096 22 C -0.158 4.158 23 C -0.154 4.154 24 N -0.589 5.589 25 C 0.467 3.533 26 N -0.822 5.822 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.270 0.730 33 H 0.172 0.828 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.422 0.578 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -10.570 6.511 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.289 6.289 3 C 0.260 3.740 4 O -0.364 6.364 5 C 0.015 3.985 6 N -0.254 5.254 7 C -0.420 4.420 8 H 0.104 0.896 9 C -0.171 4.171 10 N -0.518 5.518 11 Si 0.749 3.251 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.211 1.211 15 C 0.433 3.567 16 O -0.388 6.388 17 C -0.284 4.284 18 C 0.070 3.930 19 N -0.288 5.288 20 C 0.117 3.883 21 C -0.116 4.116 22 C -0.196 4.196 23 C -0.191 4.191 24 N -0.314 5.314 25 C 0.220 3.780 26 N -0.369 5.369 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.189 0.811 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.260 0.740 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.016 -9.840 7.226 12.251 hybrid contribution -1.263 1.539 -1.171 2.309 sum -0.246 -8.302 6.055 10.278 Atomic orbital electron populations 1.23104 0.77922 1.02690 1.02124 1.86540 1.22370 1.34935 1.85049 1.25837 0.94092 0.81116 0.73003 1.90694 1.66623 1.36138 1.42971 1.20471 0.86030 0.87254 1.04697 1.42185 1.71152 1.07015 1.05021 1.19223 1.29308 1.08468 0.84976 0.89596 1.25019 0.94366 0.99036 0.98718 1.69384 1.27690 1.22341 1.32365 0.85970 0.77517 0.80582 0.81066 1.19722 1.20992 1.21115 1.16842 0.80011 0.80891 0.78937 1.90386 1.45704 1.29276 1.73436 1.21520 1.03837 1.09602 0.93408 1.23156 0.85333 0.85671 0.98829 1.68061 1.29980 1.27896 1.02891 1.21667 0.90005 0.87838 0.88828 1.20559 0.95552 0.96319 0.99179 1.22935 1.03057 0.91657 1.01988 1.23008 0.92268 1.02097 1.01754 1.67571 1.05381 1.19459 1.39009 1.18475 0.86279 0.85571 0.87712 1.42502 1.20593 1.55306 1.18531 0.88838 0.92544 0.92352 0.87021 0.89078 0.91873 0.81088 0.85980 0.88469 0.88544 0.88678 0.86921 0.73956 0.77405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.52 16 2 O -0.37 -5.93 10.57 -39.25 -0.41 -6.35 16 3 C 0.42 8.13 8.02 36.00 0.29 8.42 16 4 O -0.48 -11.24 16.18 -18.75 -0.30 -11.54 16 5 C 0.14 2.66 5.93 -5.20 -0.03 2.63 16 6 N -0.53 -12.35 1.54 -117.34 -0.18 -12.53 16 7 C -0.29 -7.52 9.62 -15.00 -0.14 -7.67 16 8 H 0.09 2.13 7.88 -52.48 -0.41 1.72 16 9 C 0.03 0.83 5.12 -17.45 -0.09 0.74 16 10 N -0.88 -24.08 11.06 55.50 0.61 -23.46 16 11 Si 0.92 21.33 29.59 -169.99 -5.03 16.30 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.64 15.73 3.78 -12.56 -0.05 15.69 16 16 O -0.51 -14.03 14.64 5.25 0.08 -13.96 16 17 C -0.27 -5.90 5.23 -104.52 -0.55 -6.45 16 18 C 0.23 4.72 10.30 -16.80 -0.17 4.55 16 19 N -0.57 -10.71 9.30 -10.43 -0.10 -10.81 16 20 C 0.39 6.96 7.31 -157.13 -1.15 5.81 16 21 C -0.10 -1.33 6.23 -91.73 -0.57 -1.90 16 22 C -0.16 -1.78 10.23 -26.73 -0.27 -2.05 16 23 C -0.15 -1.80 10.01 -26.69 -0.27 -2.07 16 24 N -0.59 -11.29 10.35 -9.73 -0.10 -11.39 16 25 C 0.47 9.57 7.82 -154.86 -1.21 8.36 16 26 N -0.82 -14.98 8.78 31.40 0.28 -14.70 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.11 1.76 8.04 -51.92 -0.42 1.35 16 31 H 0.09 1.48 7.34 -51.93 -0.38 1.10 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.17 3.43 7.81 -52.49 -0.41 3.02 16 34 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.11 1.49 7.53 -51.93 -0.39 1.10 16 39 H 0.42 8.30 6.10 -40.82 -0.25 8.05 16 40 H 0.40 5.99 8.95 -40.82 -0.37 5.62 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -33.28 352.43 -7.72 -41.00 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -4.72 Total: 14.55 kcal Atomic # 6 Polarization: 30.73 SS G_CDS: -3.15 Total: 27.59 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: 0.51 Total: -72.90 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.64 Total: -31.84 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.28 -7.72 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597274876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.523 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds