Wall clock time and date at job start Fri Apr 10 2020 14:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99891 * 2 1 4 4 O 1.20825 * 119.99886 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00082 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47455 * 179.97438 * 5 3 2 7 7 C 1.36906 * 120.00285 * 269.99893 * 6 5 3 8 8 H 1.08004 * 119.99779 * 18.29887 * 7 6 5 9 9 C 1.39019 * 120.00554 * 198.29541 * 7 6 5 10 10 N 1.31388 * 119.99584 * 15.87400 * 9 7 6 11 11 Si 1.86791 * 120.00204 * 195.88184 * 9 7 6 12 12 H 1.48496 * 109.47583 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47573 * 119.99656 * 11 9 7 14 14 H 1.48503 * 109.47015 * 239.99679 * 11 9 7 15 15 C 1.34778 * 120.00160 * 89.99634 * 6 5 3 16 16 O 1.21631 * 120.00398 * 242.68029 * 15 6 5 17 17 C 1.47341 * 119.99724 * 62.67349 * 15 6 5 18 18 C 1.39822 * 120.99923 * 21.61003 * 17 15 6 19 19 N 1.32203 * 118.98997 * 179.97438 * 18 17 15 20 20 C 1.31971 * 121.19864 * 0.02562 * 19 18 17 21 21 C 1.50701 * 118.87633 * 179.97438 * 20 19 18 22 22 C 1.53006 * 117.50016 * 300.00065 * 21 20 19 23 23 C 1.53003 * 60.03178 * 107.47910 * 22 21 20 24 24 N 1.31687 * 122.24279 * 0.28021 * 20 19 18 25 25 C 1.32970 * 120.84679 * 359.43785 * 24 20 19 26 26 N 1.37885 * 120.63931 * 180.25441 * 25 24 20 27 27 H 1.09006 * 109.47162 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47169 * 300.00005 * 1 2 3 29 29 H 1.08997 * 109.47485 * 60.00160 * 1 2 3 30 30 H 1.09010 * 109.47221 * 59.99547 * 5 3 2 31 31 H 1.09006 * 109.47026 * 299.99872 * 5 3 2 32 32 H 0.96994 * 119.99990 * 184.95291 * 10 9 7 33 33 H 1.07994 * 120.50685 * 0.02562 * 18 17 15 34 34 H 1.08997 * 115.54576 * 154.33157 * 21 20 19 35 35 H 1.08996 * 117.49476 * 214.98252 * 22 21 20 36 36 H 1.08997 * 117.49636 * 359.97438 * 22 21 20 37 37 H 1.08991 * 117.50059 * 107.50082 * 23 22 21 38 38 H 1.09003 * 117.49740 * 252.52535 * 23 22 21 39 39 H 0.96993 * 119.99932 * 190.14543 * 26 25 24 40 40 H 0.97006 * 119.99910 * 10.15052 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1754 3.3359 -1.1869 8 1 3.7519 2.9404 -2.0984 9 6 4.9170 4.5114 -1.2180 10 7 5.6852 4.8304 -0.2009 11 14 4.8213 5.6372 -2.7054 12 1 3.8925 5.0556 -3.7076 13 1 4.3239 6.9718 -2.2851 14 1 6.1717 5.7790 -3.3066 15 6 4.1731 3.3263 1.1659 16 8 3.4807 4.2849 1.4509 17 6 5.2211 2.8719 2.0965 18 6 6.2986 2.1023 1.6474 19 7 7.2168 1.7163 2.5168 20 6 7.1312 2.0441 3.7923 21 6 8.2070 1.5755 4.7379 22 6 8.4162 0.0664 4.8780 23 6 9.4453 0.9142 4.1277 24 7 6.1347 2.7617 4.2679 25 6 5.1672 3.1997 3.4677 26 7 4.1285 3.9552 3.9694 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.9557 0.7809 -0.8909 31 1 3.9564 0.7806 0.8892 32 1 6.1465 5.6836 -0.1905 33 1 6.3801 1.8280 0.6061 34 1 8.3499 2.1882 5.6280 35 1 8.6971 -0.3137 5.8601 36 1 7.7755 -0.5876 4.2865 37 1 10.4033 1.0919 4.6162 38 1 9.4814 0.8184 3.0425 39 1 3.3556 4.1456 3.4152 40 1 4.1708 4.2962 4.8766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597274876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:25 Heat of formation + Delta-G solvation = -33.669311 kcal Electronic energy + Delta-G solvation = -27597.946711 eV Core-core repulsion = 23607.456152 eV Total energy + Delta-G solvation = -3990.490558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11795 -41.37254 -40.04406 -38.00629 -37.43596 -36.67533 -35.80687 -33.94070 -33.53785 -31.38929 -29.99032 -27.82594 -27.23995 -25.77636 -24.69354 -23.09810 -22.80701 -22.05487 -21.37820 -19.34334 -19.05752 -18.63741 -18.30855 -18.01335 -17.38497 -17.00916 -16.86782 -16.56300 -16.38272 -15.93380 -15.71983 -15.52216 -15.16443 -14.60512 -14.45033 -14.37695 -13.72302 -13.44632 -13.13460 -13.06572 -12.92550 -12.86456 -12.81879 -12.65925 -12.40455 -12.17769 -12.07658 -11.73540 -11.73015 -11.62125 -11.28607 -11.04007 -10.63599 -10.44833 -10.15413 -9.52702 -9.27523 -8.26318 -5.72030 -0.21459 0.43890 1.29215 1.37901 1.45120 1.52913 1.64504 1.98189 2.29955 2.43641 2.77537 2.99548 3.08379 3.18931 3.25835 3.51868 3.86053 4.01476 4.03301 4.16769 4.23721 4.25256 4.32553 4.35008 4.41274 4.52005 4.63195 4.70501 4.74452 4.90111 5.07475 5.26004 5.41321 5.43034 5.43924 5.49210 5.84791 5.97588 6.22430 6.68771 6.86112 6.91190 7.20538 7.32523 7.48706 7.86056 8.83482 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.005321 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.547843 B = 5260.414193 C = 6678.734355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.429 3.571 4 O -0.529 6.529 5 C 0.139 3.861 6 N -0.541 5.541 7 C -0.295 4.295 8 H 0.090 0.910 9 C -0.017 4.017 10 N -0.901 5.901 11 Si 0.974 3.026 12 H -0.263 1.263 13 H -0.301 1.301 14 H -0.276 1.276 15 C 0.643 3.357 16 O -0.557 6.557 17 C -0.297 4.297 18 C 0.241 3.759 19 N -0.570 5.570 20 C 0.383 3.617 21 C -0.123 4.123 22 C -0.137 4.137 23 C -0.144 4.144 24 N -0.591 5.591 25 C 0.459 3.541 26 N -0.812 5.812 27 H 0.138 0.862 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.141 0.859 31 H 0.114 0.886 32 H 0.260 0.740 33 H 0.171 0.829 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.417 0.583 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -12.780 7.225 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.270 3.730 4 O -0.417 6.417 5 C 0.012 3.988 6 N -0.268 5.268 7 C -0.422 4.422 8 H 0.108 0.892 9 C -0.217 4.217 10 N -0.543 5.543 11 Si 0.801 3.199 12 H -0.187 1.187 13 H -0.229 1.229 14 H -0.202 1.202 15 C 0.437 3.563 16 O -0.435 6.435 17 C -0.311 4.311 18 C 0.078 3.922 19 N -0.289 5.289 20 C 0.116 3.884 21 C -0.143 4.143 22 C -0.175 4.175 23 C -0.181 4.181 24 N -0.317 5.317 25 C 0.211 3.789 26 N -0.359 5.359 27 H 0.156 0.844 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.188 0.812 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.106 0.894 37 H 0.142 0.858 38 H 0.114 0.886 39 H 0.254 0.746 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.963 -12.121 7.952 14.629 hybrid contribution -1.611 2.071 -1.315 2.935 sum 0.352 -10.050 6.636 12.048 Atomic orbital electron populations 1.23470 0.75705 1.05515 1.01800 1.86511 1.24394 1.32778 1.84170 1.25788 0.94316 0.81246 0.71693 1.90684 1.67639 1.37855 1.45495 1.20795 0.85657 0.85143 1.07171 1.42288 1.71486 1.08874 1.04170 1.19464 1.28173 1.08658 0.85898 0.89238 1.25719 0.94730 1.00375 1.00854 1.69519 1.28850 1.22036 1.33908 0.85145 0.77816 0.78071 0.78897 1.18703 1.22874 1.20219 1.17256 0.79616 0.80084 0.79332 1.90350 1.47348 1.31084 1.74699 1.21339 1.04090 1.11937 0.93757 1.23143 0.85026 0.85011 0.99063 1.68180 1.29331 1.28188 1.03205 1.22618 0.90230 0.86301 0.89240 1.20792 0.95643 0.98549 0.99295 1.23053 1.01759 0.89354 1.03319 1.23088 0.92874 1.01067 1.01111 1.67738 1.05485 1.20013 1.38476 1.18685 0.86894 0.85648 0.87671 1.42441 1.19819 1.54591 1.19077 0.84377 0.92989 0.92700 0.84116 0.86793 0.92946 0.81236 0.84638 0.85271 0.89440 0.85790 0.88636 0.74644 0.75766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 16 2 O -0.36 -10.95 10.57 -51.41 -0.54 -11.50 16 3 C 0.43 16.33 8.02 71.23 0.57 16.91 16 4 O -0.53 -25.10 16.18 21.97 0.36 -24.74 16 5 C 0.14 5.05 5.93 85.63 0.51 5.55 16 6 N -0.54 -25.61 1.54 -643.41 -0.99 -26.60 16 7 C -0.30 -15.25 9.62 84.09 0.81 -14.45 16 8 H 0.09 4.44 7.88 -2.91 -0.02 4.41 16 9 C -0.02 -0.93 5.12 84.95 0.43 -0.50 16 10 N -0.90 -50.72 11.06 21.68 0.24 -50.48 16 11 Si 0.97 44.51 29.59 68.60 2.03 46.54 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 15 C 0.64 32.27 3.78 86.64 0.33 32.60 16 16 O -0.56 -31.57 14.64 -4.13 -0.06 -31.63 16 17 C -0.30 -13.18 5.23 -19.80 -0.10 -13.28 16 18 C 0.24 9.79 10.30 85.02 0.88 10.66 16 19 N -0.57 -21.04 9.30 -186.92 -1.74 -22.78 16 20 C 0.38 13.41 7.31 138.73 1.01 14.42 16 21 C -0.12 -3.10 6.23 -11.51 -0.07 -3.18 16 22 C -0.14 -2.61 10.23 30.60 0.31 -2.29 16 23 C -0.14 -2.94 10.01 30.62 0.31 -2.63 16 24 N -0.59 -22.27 10.35 -184.70 -1.91 -24.18 16 25 C 0.46 18.93 7.82 133.75 1.05 19.97 16 26 N -0.81 -30.05 8.78 -54.56 -0.48 -30.52 16 27 H 0.14 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.14 4.22 8.04 -2.38 -0.02 4.20 16 31 H 0.11 3.59 7.34 -2.38 -0.02 3.57 16 32 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 33 H 0.17 6.83 7.81 -2.91 -0.02 6.81 16 34 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 35 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.10 2.33 7.53 -2.39 -0.02 2.31 16 39 H 0.42 16.92 6.10 -92.71 -0.57 16.36 16 40 H 0.41 12.40 8.95 -92.70 -0.83 11.57 16 Total: -1.00 -73.96 352.43 3.85 -70.11 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: -0.28 Total: 40.13 kcal Atomic # 6 Polarization: 58.43 SS G_CDS: 7.23 Total: 65.66 kcal Atomic # 7 Polarization: -149.68 SS G_CDS: -4.88 Total: -154.56 kcal Atomic # 8 Polarization: -67.63 SS G_CDS: -0.25 Total: -67.87 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -73.96 3.85 -70.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597274876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.445 kcal (2) G-P(sol) polarization free energy of solvation -73.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds