Wall clock time and date at job start Fri Apr 10 2020 14:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34750 * 117.00249 * 2 1 4 4 O 1.21524 * 120.00064 * 0.02562 * 3 2 1 5 5 C 1.47289 * 120.00221 * 179.97438 * 3 2 1 6 6 C 1.41343 * 126.42670 * 359.97438 * 5 3 2 7 7 N 1.30431 * 108.01316 * 179.77418 * 6 5 3 8 8 N 1.39927 * 108.92086 * 0.38334 * 7 6 5 9 9 C 1.46496 * 125.74678 * 179.87324 * 8 7 6 10 10 C 1.50706 * 109.47106 * 304.68907 * 9 8 7 11 11 O 1.21279 * 119.99507 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99544 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47598 * 90.00303 * 13 12 10 15 15 H 1.08005 * 119.99628 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00538 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99774 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00058 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46901 * 90.00358 * 18 16 14 20 20 H 1.48498 * 109.46773 * 209.99999 * 18 16 14 21 21 H 1.48494 * 109.46962 * 330.00109 * 18 16 14 22 22 C 1.46495 * 119.99828 * 0.02562 * 12 10 9 23 23 C 1.53004 * 109.46986 * 90.00387 * 22 12 10 24 24 C 1.47205 * 109.46941 * 179.97438 * 23 22 12 25 25 N 9.61846 * 167.04880 * 162.05793 * 3 1 2 26 26 C 1.34232 * 108.50832 * 359.60715 * 8 7 6 27 27 H 1.08989 * 109.47172 * 300.00231 * 1 2 3 28 28 H 1.08997 * 109.46843 * 60.00250 * 1 2 3 29 29 H 1.09002 * 109.47013 * 179.97438 * 1 2 3 30 30 H 1.07998 * 125.99449 * 359.97438 * 6 5 3 31 31 H 1.09001 * 109.47001 * 184.69198 * 9 8 7 32 32 H 1.09000 * 109.47574 * 64.69414 * 9 8 7 33 33 H 1.09008 * 109.47096 * 209.99661 * 13 12 10 34 34 H 1.09003 * 109.47776 * 329.99537 * 13 12 10 35 35 H 0.97002 * 119.99965 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.46971 * 209.99938 * 22 12 10 37 37 H 1.08993 * 109.47768 * 330.00002 * 22 12 10 38 38 H 1.08996 * 109.46936 * 299.99297 * 23 22 12 39 39 H 1.08997 * 109.47532 * 59.99922 * 23 22 12 40 40 H 1.08003 * 126.29077 * 180.22839 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5346 1.2777 0.0006 6 6 4.4323 0.1859 0.0017 7 7 5.6466 0.6621 -0.0030 8 7 5.5857 2.0600 0.0016 9 6 6.7364 2.9667 0.0012 10 6 7.6348 2.6388 1.1659 11 8 7.3428 1.7362 1.9215 12 7 8.7631 3.3478 1.3671 13 6 9.6366 3.0286 2.4990 14 6 10.6565 2.0041 2.0733 15 1 10.6539 1.6280 1.0609 16 6 11.5928 1.5468 2.9762 17 7 11.5956 2.0044 4.2091 18 14 12.8565 0.2763 2.4486 19 1 14.0628 0.9659 1.9248 20 1 13.2328 -0.5617 3.6154 21 1 12.2784 -0.5853 1.3862 22 6 9.1160 4.4377 0.4540 23 6 8.5077 5.7462 0.9625 24 6 8.8627 6.8415 0.0453 25 7 9.1349 7.6869 -0.6641 26 6 4.2955 2.4304 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.1604 -0.8593 0.0026 31 1 6.3881 3.9958 0.0895 32 1 7.2910 2.8496 -0.9298 33 1 10.1469 3.9330 2.8306 34 1 9.0389 2.6279 3.3177 35 1 12.2541 1.6824 4.8445 36 1 10.2006 4.5354 0.4069 37 1 8.7274 4.2187 -0.5405 38 1 7.4231 5.6485 1.0096 39 1 8.8963 5.9653 1.9570 40 1 3.9213 3.4435 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599137418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:23 Heat of formation + Delta-G solvation = -4.617244 kcal Electronic energy + Delta-G solvation = -25862.816173 eV Core-core repulsion = 21873.585407 eV Total energy + Delta-G solvation = -3989.230766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.53851 -40.04207 -39.29001 -36.99095 -36.40627 -35.43244 -33.65734 -32.85078 -31.01390 -30.62190 -29.03760 -27.73708 -26.60794 -24.21196 -23.45675 -22.92076 -21.24336 -20.42898 -19.01213 -18.00022 -17.80240 -17.03989 -16.90836 -16.54518 -16.41910 -16.13602 -15.48253 -15.23047 -14.80795 -14.52921 -14.40876 -13.94017 -13.86105 -13.62498 -13.38572 -13.06490 -13.03713 -12.68332 -12.58145 -12.40311 -12.27714 -12.07576 -11.86309 -11.38069 -11.18416 -11.09802 -10.97324 -10.91109 -10.69995 -10.33972 -10.25828 -9.91731 -9.78861 -9.21778 -8.80394 -8.53599 -8.03692 -6.15557 -4.20506 1.23985 2.01065 2.16093 2.59371 2.68674 2.77836 2.97115 3.16924 3.25165 3.33062 3.36152 3.43928 3.95991 4.33293 4.39561 4.53564 4.62720 4.79259 4.84805 4.90155 4.94297 4.95258 4.99327 5.01457 5.19998 5.24181 5.31080 5.36446 5.58915 5.65469 5.89844 6.26067 6.38648 6.54187 6.78760 7.19220 7.28578 7.45313 7.51027 7.76504 7.79836 8.01031 8.08170 8.62669 8.84494 9.45537 10.92685 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.003281 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.524293 B = 8532.846405 C =10541.118051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.355 6.355 3 C 0.549 3.451 4 O -0.527 6.527 5 C -0.289 4.289 6 C 0.092 3.908 7 N -0.256 5.256 8 N -0.338 5.338 9 C 0.102 3.898 10 C 0.495 3.505 11 O -0.499 6.499 12 N -0.593 5.593 13 C 0.247 3.753 14 C -0.531 4.531 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.893 5.893 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.112 3.888 23 C -0.051 4.051 24 C 0.214 3.786 25 N -0.441 5.441 26 C 0.138 3.862 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.196 0.804 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.265 0.735 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.194 2.085 -8.981 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.271 6.271 3 C 0.395 3.605 4 O -0.417 6.417 5 C -0.302 4.302 6 C -0.097 4.097 7 N -0.074 5.074 8 N -0.114 5.114 9 C -0.023 4.023 10 C 0.278 3.722 11 O -0.372 6.372 12 N -0.326 5.326 13 C 0.129 3.871 14 C -0.570 4.570 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.014 4.014 23 C -0.092 4.092 24 C -0.104 4.104 25 N -0.118 5.118 26 C -0.014 4.014 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.212 0.788 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.138 0.862 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.655 2.906 -9.419 17.662 hybrid contribution -0.342 -0.645 0.114 0.739 sum -14.997 2.261 -9.304 17.793 Atomic orbital electron populations 1.23228 0.76286 1.03535 1.02453 1.86545 1.23188 1.32732 1.84673 1.19992 0.87516 0.81149 0.71826 1.90820 1.66817 1.36017 1.48051 1.19173 0.90458 0.93620 1.26931 1.24229 0.88816 1.00090 0.96575 1.77531 1.21388 0.86738 1.21710 1.48064 1.04548 1.05730 1.53107 1.21952 0.86337 0.92332 1.01677 1.20046 0.82305 0.83658 0.86162 1.90803 1.72078 1.28535 1.45773 1.48211 1.22515 1.31490 1.30373 1.19400 0.88193 0.96567 0.82977 1.21383 1.13714 1.24069 0.97788 0.92278 1.24910 0.97733 0.96537 0.94721 1.69911 1.35915 1.43589 1.03762 0.86498 0.81219 0.81435 0.78333 1.20629 1.21067 1.19779 1.21396 1.02822 0.84462 0.92720 1.19898 1.03152 0.88901 0.97276 1.29074 0.93252 0.94207 0.93864 1.81266 1.08981 1.11059 1.10477 1.22894 0.83534 0.99921 0.95072 0.91949 0.92030 0.88150 0.78758 0.85846 0.86313 0.94425 0.93504 0.92583 0.88149 0.90680 0.87735 0.86188 0.79271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.36 16 2 O -0.36 -3.91 10.41 -40.63 -0.42 -4.33 16 3 C 0.55 6.99 7.95 34.41 0.27 7.27 16 4 O -0.53 -7.62 16.69 -19.28 -0.32 -7.94 16 5 C -0.29 -3.66 6.13 -105.08 -0.64 -4.30 16 6 C 0.09 1.22 11.87 -16.97 -0.20 1.02 16 7 N -0.26 -4.09 11.56 30.87 0.36 -3.73 16 8 N -0.34 -4.48 3.37 -61.97 -0.21 -4.69 16 9 C 0.10 1.12 5.52 -5.19 -0.03 1.09 16 10 C 0.49 8.31 7.70 -10.98 -0.08 8.22 16 11 O -0.50 -11.21 15.29 5.56 0.08 -11.13 16 12 N -0.59 -9.72 2.46 -175.06 -0.43 -10.15 16 13 C 0.25 5.52 5.16 -5.20 -0.03 5.50 16 14 C -0.53 -13.71 9.39 -34.44 -0.32 -14.03 16 15 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 18 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.11 1.24 5.17 -4.04 -0.02 1.21 16 23 C -0.05 -0.42 6.03 -29.51 -0.18 -0.60 16 24 C 0.21 2.20 15.44 -20.73 -0.32 1.88 16 25 N -0.44 -5.84 18.54 42.18 0.78 -5.06 16 26 C 0.14 1.58 11.25 -16.55 -0.19 1.39 16 27 H 0.06 0.47 8.14 -51.94 -0.42 0.05 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.20 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.12 0.76 7.11 -51.93 -0.37 0.39 16 32 H 0.12 1.08 7.40 -51.93 -0.38 0.69 16 33 H 0.04 0.83 8.07 -51.92 -0.42 0.41 16 34 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.10 1.23 8.07 -51.93 -0.42 0.81 16 37 H 0.07 0.61 6.44 -51.93 -0.33 0.28 16 38 H 0.10 0.59 7.22 -51.93 -0.38 0.21 16 39 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.19 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -37.15 366.61 -4.46 -41.60 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -4.77 Total: -3.38 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -0.77 Total: 11.63 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 1.24 Total: -47.89 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.66 Total: -23.40 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.15 -4.46 -41.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599137418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.984 kcal (2) G-P(sol) polarization free energy of solvation -37.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds