Wall clock time and date at job start Fri Apr 10 2020 14:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00042 * 2 1 4 4 C 1.52996 * 109.47181 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47250 * 67.63414 * 4 3 2 6 6 C 1.46496 * 120.00376 * 278.42915 * 5 4 3 7 7 C 1.50703 * 109.47038 * 269.99736 * 6 5 4 8 8 H 1.07994 * 119.99991 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99991 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00196 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99822 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47027 * 60.00760 * 11 9 7 13 13 H 1.48509 * 109.46861 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47384 * 300.00371 * 11 9 7 15 15 C 1.34785 * 120.00015 * 98.42689 * 5 4 3 16 16 O 1.21594 * 119.99687 * 186.17766 * 15 5 4 17 17 C 1.47542 * 119.99860 * 6.17210 * 15 5 4 18 18 C 1.46405 * 120.25345 * 315.27537 * 17 15 5 19 19 C 1.35585 * 119.10666 * 180.02562 * 18 17 15 20 20 C 1.41181 * 119.48280 * 0.27528 * 19 18 17 21 21 N 1.32060 * 132.78860 * 179.67582 * 20 19 18 22 22 N 1.28598 * 109.71448 * 180.02562 * 21 20 19 23 23 C 1.31104 * 110.34767 * 359.34725 * 22 21 20 24 24 O 1.35690 * 126.32954 * 179.97438 * 23 22 21 25 25 N 1.36526 * 107.33019 * 0.75350 * 23 22 21 26 26 C 1.36032 * 133.10503 * 179.15935 * 25 23 22 27 27 H 1.09005 * 109.47766 * 300.00579 * 1 2 3 28 28 H 1.09003 * 109.47359 * 60.00737 * 1 2 3 29 29 H 1.09001 * 109.47219 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47174 * 59.99393 * 3 2 1 31 31 H 1.08999 * 109.47097 * 299.99275 * 3 2 1 32 32 H 1.09003 * 109.47616 * 307.63656 * 4 3 2 33 33 H 1.09007 * 109.47373 * 187.63332 * 4 3 2 34 34 H 1.09006 * 109.47088 * 29.99407 * 6 5 4 35 35 H 1.08993 * 109.47488 * 149.99819 * 6 5 4 36 36 H 0.96992 * 120.00499 * 179.97438 * 10 9 7 37 37 H 1.08007 * 120.44295 * 0.02562 * 18 17 15 38 38 H 1.07998 * 120.26285 * 180.02562 * 19 18 17 39 39 H 0.96700 * 113.99344 * 270.99261 * 24 23 22 40 40 H 1.07996 * 119.79130 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9812 0.6219 -1.2764 6 6 3.9357 -0.8260 -1.4946 7 6 5.2398 -1.4413 -1.0564 8 1 6.0238 -0.8163 -0.6551 9 6 5.4315 -2.8022 -1.1669 10 7 4.4766 -3.5633 -1.6552 11 14 7.0482 -3.5647 -0.6244 12 1 7.2667 -3.2877 0.8181 13 1 7.0020 -5.0325 -0.8456 14 1 8.1611 -2.9802 -1.4149 15 6 4.4333 1.4363 -2.2505 16 8 4.6971 0.9835 -3.3478 17 6 4.6078 2.8772 -1.9856 18 6 3.5716 3.6271 -1.2731 19 6 3.7559 4.9504 -1.0426 20 6 4.9362 5.5772 -1.4977 21 7 5.3770 6.8201 -1.4257 22 7 6.5266 6.9063 -1.9953 23 6 6.8985 5.7347 -2.4514 24 8 8.0536 5.4569 -3.1069 25 7 5.9006 4.8496 -2.1602 26 6 5.7364 3.5212 -2.4027 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6884 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8478 0.5305 0.8147 33 1 3.9780 2.1714 0.1372 34 1 3.1185 -1.2553 -0.9149 35 1 3.7759 -1.0290 -2.5535 36 1 4.6115 -4.5206 -1.7333 37 1 2.6726 3.1326 -0.9358 38 1 3.0039 5.5214 -0.5185 39 1 7.9973 5.5656 -4.0661 40 1 6.5041 2.9727 -2.9282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611194321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:45 Heat of formation + Delta-G solvation = 17.934801 kcal Electronic energy + Delta-G solvation = -27106.650274 eV Core-core repulsion = 23118.397438 eV Total energy + Delta-G solvation = -3988.252836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.75076 -39.92114 -38.06038 -37.79963 -37.45125 -35.22122 -33.97349 -32.75348 -31.39614 -29.93115 -29.11992 -27.45798 -26.10390 -24.97134 -23.88756 -22.94297 -22.73888 -22.57896 -19.97791 -19.08352 -18.30687 -17.50752 -16.94065 -16.73360 -16.55515 -16.42493 -15.54762 -15.31759 -15.17501 -15.06807 -14.81093 -14.54363 -13.96938 -13.83228 -13.30979 -12.82762 -12.71566 -12.48933 -12.24046 -12.09849 -11.98432 -11.86823 -11.84763 -11.36040 -11.27393 -10.97951 -10.93859 -10.71046 -10.50773 -10.23121 -9.79243 -9.66844 -9.53544 -9.34416 -8.44511 -8.38968 -7.85601 -6.07013 -4.12054 0.34364 0.57099 1.60885 2.18860 2.80089 3.16826 3.29288 3.33991 3.36624 3.44396 3.64349 3.82933 3.90386 4.21669 4.31140 4.42066 4.53685 4.59193 4.99270 5.14429 5.17894 5.26698 5.28174 5.30204 5.42757 5.44841 5.48520 5.57466 5.58602 5.66757 5.80710 5.92901 6.08289 6.25018 6.95683 7.03430 7.26126 7.35572 7.50050 7.88934 8.16538 8.18631 8.18907 8.64116 8.92389 9.52124 11.01032 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011934 B = 0.004306 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.741304 B = 6501.290005 C = 8307.429371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.039 3.961 4 C 0.098 3.902 5 N -0.574 5.574 6 C 0.245 3.755 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.065 3.935 10 N -0.890 5.890 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.555 3.445 16 O -0.527 6.527 17 C -0.131 4.131 18 C -0.072 4.072 19 C -0.087 4.087 20 C 0.213 3.787 21 N -0.275 5.275 22 N -0.241 5.241 23 C 0.319 3.681 24 O -0.427 6.427 25 N -0.401 5.401 26 C 0.118 3.882 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.406 0.594 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 14.806 2.006 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.039 4.039 4 C -0.026 4.026 5 N -0.303 5.303 6 C 0.127 3.873 7 C -0.571 4.571 8 H 0.073 0.927 9 C -0.138 4.138 10 N -0.529 5.529 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.203 1.203 15 C 0.339 3.661 16 O -0.404 6.404 17 C -0.139 4.139 18 C -0.096 4.096 19 C -0.107 4.107 20 C -0.037 4.037 21 N -0.123 5.123 22 N -0.091 5.091 23 C 0.019 3.981 24 O -0.226 6.226 25 N -0.092 5.092 26 C -0.005 4.005 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.179 0.821 38 H 0.184 0.816 39 H 0.264 0.736 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.615 15.619 2.143 16.427 hybrid contribution 0.674 -1.596 -0.515 1.807 sum -3.941 14.023 1.628 14.657 Atomic orbital electron populations 1.22737 0.81778 1.02885 0.99218 1.88145 1.18957 1.26250 1.95101 1.23217 0.94934 0.86101 0.99675 1.21824 0.91675 1.00183 0.88914 1.48156 1.59998 1.10014 1.12169 1.19510 0.97853 0.70957 0.98947 1.21374 1.00441 0.92488 1.42827 0.92664 1.24886 0.96794 0.96981 0.95125 1.69920 1.32583 1.05445 1.44943 0.86598 0.83878 0.78108 0.79047 1.20237 1.21134 1.20283 1.17574 0.79519 0.83641 0.85372 1.90823 1.50997 1.75869 1.22758 1.21014 0.94675 0.96557 1.01613 1.22846 0.98843 0.93129 0.94823 1.20186 0.94210 0.94075 1.02279 1.22108 0.92255 0.89577 0.99768 1.74921 1.04237 1.13150 1.19987 1.74507 1.06834 1.16029 1.11772 1.21837 0.86266 0.84784 1.05222 1.85023 1.23223 1.88991 1.25373 1.43968 1.16279 1.09244 1.39748 1.21662 0.99565 0.80725 0.98540 0.94539 0.94431 0.89566 0.92422 0.93265 0.88533 0.89341 0.92469 0.93886 0.92642 0.82133 0.81635 0.73638 0.80147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.37 -5.66 8.91 -35.23 -0.31 -5.98 16 3 C 0.04 0.46 5.17 37.16 0.19 0.65 16 4 C 0.10 1.41 5.35 -4.04 -0.02 1.39 16 5 N -0.57 -11.06 2.46 -176.29 -0.43 -11.50 16 6 C 0.25 6.08 5.08 -5.19 -0.03 6.06 16 7 C -0.53 -14.46 9.39 -34.44 -0.32 -14.78 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 11 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.55 10.42 7.29 -12.46 -0.09 10.33 16 16 O -0.53 -12.12 16.52 5.28 0.09 -12.04 16 17 C -0.13 -1.84 5.18 -103.46 -0.54 -2.37 16 18 C -0.07 -0.75 7.61 -37.24 -0.28 -1.03 16 19 C -0.09 -0.84 10.09 -39.41 -0.40 -1.24 16 20 C 0.21 2.74 7.91 -155.70 -1.23 1.51 16 21 N -0.28 -4.03 12.28 31.26 0.38 -3.65 16 22 N -0.24 -3.59 12.19 29.73 0.36 -3.23 16 23 C 0.32 4.19 9.38 -88.50 -0.83 3.36 16 24 O -0.43 -4.42 13.65 -18.77 -0.26 -4.68 16 25 N -0.40 -5.25 2.95 -63.68 -0.19 -5.44 16 26 C 0.12 1.57 10.58 -16.33 -0.17 1.40 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.54 6.40 -51.93 -0.33 0.20 16 32 H 0.10 1.51 8.13 -51.93 -0.42 1.09 16 33 H 0.09 1.01 4.92 -51.93 -0.26 0.76 16 34 H 0.06 1.47 6.43 -51.93 -0.33 1.14 16 35 H 0.04 1.22 7.34 -51.93 -0.38 0.83 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.16 1.38 3.80 -52.48 -0.20 1.18 16 38 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.41 1.97 9.06 45.56 0.41 2.39 16 40 H 0.18 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 343.52 15.07 5.18 5.18 Total: -1.00 -35.87 343.52 -5.77 -41.64 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -3.59 Total: 0.01 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -2.71 Total: 8.44 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.86 Total: -48.86 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.48 Total: -22.69 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.87 -5.77 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611194321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.571 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds