Wall clock time and date at job start Fri Apr 10 2020 14:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00042 * 2 1 4 4 C 1.52996 * 109.47181 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47250 * 67.63414 * 4 3 2 6 6 C 1.46496 * 120.00376 * 278.42915 * 5 4 3 7 7 C 1.50703 * 109.47038 * 269.99736 * 6 5 4 8 8 H 1.07994 * 119.99991 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99991 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00196 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99822 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47027 * 60.00760 * 11 9 7 13 13 H 1.48509 * 109.46861 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47384 * 300.00371 * 11 9 7 15 15 C 1.34785 * 120.00015 * 98.42689 * 5 4 3 16 16 O 1.21594 * 119.99687 * 186.17766 * 15 5 4 17 17 C 1.47542 * 119.99860 * 6.17210 * 15 5 4 18 18 C 1.46405 * 120.25345 * 315.27537 * 17 15 5 19 19 C 1.35585 * 119.10666 * 180.02562 * 18 17 15 20 20 C 1.41181 * 119.48280 * 0.27528 * 19 18 17 21 21 N 1.32060 * 132.78860 * 179.67582 * 20 19 18 22 22 N 1.28598 * 109.71448 * 180.02562 * 21 20 19 23 23 C 1.31104 * 110.34767 * 359.34725 * 22 21 20 24 24 O 1.35690 * 126.32954 * 179.97438 * 23 22 21 25 25 N 1.36526 * 107.33019 * 0.75350 * 23 22 21 26 26 C 1.36032 * 133.10503 * 179.15935 * 25 23 22 27 27 H 1.09005 * 109.47766 * 300.00579 * 1 2 3 28 28 H 1.09003 * 109.47359 * 60.00737 * 1 2 3 29 29 H 1.09001 * 109.47219 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47174 * 59.99393 * 3 2 1 31 31 H 1.08999 * 109.47097 * 299.99275 * 3 2 1 32 32 H 1.09003 * 109.47616 * 307.63656 * 4 3 2 33 33 H 1.09007 * 109.47373 * 187.63332 * 4 3 2 34 34 H 1.09006 * 109.47088 * 29.99407 * 6 5 4 35 35 H 1.08993 * 109.47488 * 149.99819 * 6 5 4 36 36 H 0.96992 * 120.00499 * 179.97438 * 10 9 7 37 37 H 1.08007 * 120.44295 * 0.02562 * 18 17 15 38 38 H 1.07998 * 120.26285 * 180.02562 * 19 18 17 39 39 H 0.96700 * 113.99344 * 270.99261 * 24 23 22 40 40 H 1.07996 * 119.79130 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9812 0.6219 -1.2764 6 6 3.9357 -0.8260 -1.4946 7 6 5.2398 -1.4413 -1.0564 8 1 6.0238 -0.8163 -0.6551 9 6 5.4315 -2.8022 -1.1669 10 7 4.4766 -3.5633 -1.6552 11 14 7.0482 -3.5647 -0.6244 12 1 7.2667 -3.2877 0.8181 13 1 7.0020 -5.0325 -0.8456 14 1 8.1611 -2.9802 -1.4149 15 6 4.4333 1.4363 -2.2505 16 8 4.6971 0.9835 -3.3478 17 6 4.6078 2.8772 -1.9856 18 6 3.5716 3.6271 -1.2731 19 6 3.7559 4.9504 -1.0426 20 6 4.9362 5.5772 -1.4977 21 7 5.3770 6.8201 -1.4257 22 7 6.5266 6.9063 -1.9953 23 6 6.8985 5.7347 -2.4514 24 8 8.0536 5.4569 -3.1069 25 7 5.9006 4.8496 -2.1602 26 6 5.7364 3.5212 -2.4027 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6884 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8478 0.5305 0.8147 33 1 3.9780 2.1714 0.1372 34 1 3.1185 -1.2553 -0.9149 35 1 3.7759 -1.0290 -2.5535 36 1 4.6115 -4.5206 -1.7333 37 1 2.6726 3.1326 -0.9358 38 1 3.0039 5.5214 -0.5185 39 1 7.9973 5.5656 -4.0661 40 1 6.5041 2.9727 -2.9282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611194321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:44 Heat of formation + Delta-G solvation = -10.439445 kcal Electronic energy + Delta-G solvation = -27107.880674 eV Core-core repulsion = 23118.397438 eV Total energy + Delta-G solvation = -3989.483236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.75416 -41.27604 -38.99070 -38.82234 -38.60371 -36.69204 -35.16038 -34.54939 -32.55640 -31.20100 -30.16182 -29.14471 -27.08672 -26.35980 -24.86776 -24.44854 -23.89161 -23.70584 -21.10818 -20.21170 -19.40625 -18.67029 -18.46804 -18.08454 -17.78434 -17.52774 -16.94340 -16.57931 -16.27420 -16.13962 -16.02649 -15.83384 -15.36955 -14.93964 -14.51384 -14.29543 -13.73175 -13.70852 -13.53747 -13.34163 -13.28666 -13.05022 -12.97198 -12.86432 -12.67428 -12.54233 -12.19074 -12.14420 -11.88723 -11.70176 -11.69293 -11.04895 -10.69284 -10.59594 -10.45840 -9.54816 -9.30538 -8.18611 -6.32455 -0.66255 -0.35116 0.60818 1.15201 1.38346 1.41222 1.48310 1.63929 2.00582 2.24957 2.40199 2.55373 2.91154 2.96747 3.11945 3.16736 3.38812 3.45742 3.63681 4.02521 4.17869 4.21241 4.32925 4.39179 4.51617 4.59695 4.63412 4.67222 4.69427 4.82656 4.94796 4.97262 5.10485 5.20504 5.32948 5.37230 5.53346 5.84080 6.09546 6.23079 6.37771 6.63937 6.76420 7.14951 7.15750 7.38437 8.88480 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011934 B = 0.004306 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.741304 B = 6501.290005 C = 8307.429371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.037 3.963 4 C 0.092 3.908 5 N -0.579 5.579 6 C 0.266 3.734 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.961 3.039 12 H -0.263 1.263 13 H -0.280 1.280 14 H -0.277 1.277 15 C 0.553 3.447 16 O -0.582 6.582 17 C -0.135 4.135 18 C -0.066 4.066 19 C -0.063 4.063 20 C 0.208 3.792 21 N -0.295 5.295 22 N -0.267 5.267 23 C 0.325 3.675 24 O -0.431 6.431 25 N -0.404 5.404 26 C 0.122 3.878 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.045 0.955 35 H -0.004 1.004 36 H 0.266 0.734 37 H 0.185 0.815 38 H 0.210 0.790 39 H 0.430 0.570 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.757 16.704 3.698 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.040 4.040 4 C -0.030 4.030 5 N -0.307 5.307 6 C 0.146 3.854 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.187 4.187 10 N -0.564 5.564 11 Si 0.786 3.214 12 H -0.188 1.188 13 H -0.205 1.205 14 H -0.203 1.203 15 C 0.340 3.660 16 O -0.463 6.463 17 C -0.142 4.142 18 C -0.090 4.090 19 C -0.084 4.084 20 C -0.042 4.042 21 N -0.142 5.142 22 N -0.117 5.117 23 C 0.024 3.976 24 O -0.233 6.233 25 N -0.096 5.096 26 C -0.002 4.002 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.141 0.859 34 H 0.063 0.937 35 H 0.014 0.986 36 H 0.075 0.925 37 H 0.202 0.798 38 H 0.227 0.773 39 H 0.292 0.708 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.016 17.580 3.860 18.685 hybrid contribution 0.813 -2.136 -1.090 2.532 sum -4.203 15.444 2.771 16.244 Atomic orbital electron populations 1.22868 0.79949 1.03045 1.01043 1.88075 1.21184 1.28549 1.95528 1.23355 0.92675 0.85452 1.02533 1.22181 0.94023 1.01108 0.85700 1.48054 1.60253 1.08105 1.14305 1.18847 0.96520 0.74552 0.95530 1.21701 1.01236 0.92954 1.42557 0.92832 1.25761 1.00241 0.97598 0.95136 1.70046 1.34610 1.05727 1.46021 0.85565 0.79376 0.77272 0.79168 1.18763 1.20533 1.20272 1.18142 0.78026 0.85520 0.84296 1.90787 1.53119 1.77471 1.24961 1.20550 0.96461 0.93722 1.03508 1.22917 0.98443 0.93162 0.94522 1.20660 0.93436 0.93571 1.00695 1.22694 0.92973 0.89244 0.99337 1.74853 1.04484 1.14086 1.20767 1.74461 1.07458 1.16873 1.12893 1.21953 0.86455 0.84447 1.04695 1.84979 1.22172 1.88786 1.27378 1.44004 1.16615 1.08934 1.40073 1.21537 0.99501 0.80915 0.98199 0.91639 0.93511 0.90461 0.87729 0.91857 0.90163 0.85867 0.93747 0.98577 0.92518 0.79822 0.77332 0.70842 0.80393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -12.44 8.91 -148.98 -1.33 -13.77 16 3 C 0.04 0.77 5.17 71.98 0.37 1.15 16 4 C 0.09 2.49 5.35 86.38 0.46 2.95 16 5 N -0.58 -22.59 2.46 -829.90 -2.04 -24.64 16 6 C 0.27 13.81 5.08 85.63 0.43 14.25 16 7 C -0.55 -30.50 9.39 25.60 0.24 -30.26 16 8 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 9 C 0.01 0.68 5.46 84.66 0.46 1.14 16 10 N -0.92 -55.15 13.29 21.45 0.28 -54.86 16 11 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 12 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 15 C 0.55 21.08 7.29 86.70 0.63 21.71 16 16 O -0.58 -28.05 16.52 -4.01 -0.07 -28.11 16 17 C -0.14 -3.59 5.18 -19.11 -0.10 -3.69 16 18 C -0.07 -1.14 7.61 23.78 0.18 -0.96 16 19 C -0.06 -0.95 10.09 22.38 0.23 -0.72 16 20 C 0.21 4.78 7.91 134.08 1.06 5.84 16 21 N -0.30 -8.04 12.28 -55.01 -0.68 -8.72 16 22 N -0.27 -7.59 12.19 -173.28 -2.11 -9.71 16 23 C 0.33 8.10 9.38 179.61 1.69 9.79 16 24 O -0.43 -8.33 13.65 -90.09 -1.23 -9.56 16 25 N -0.40 -9.88 2.95 -465.98 -1.38 -11.26 16 26 C 0.12 3.12 10.58 83.63 0.89 4.00 16 27 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.06 1.16 6.40 -2.39 -0.02 1.14 16 32 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 33 H 0.12 2.43 4.92 -2.38 -0.01 2.42 16 34 H 0.04 2.40 6.43 -2.38 -0.02 2.39 16 35 H 0.00 -0.24 7.34 -2.39 -0.02 -0.25 16 36 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.18 2.30 3.80 -2.91 -0.01 2.28 16 38 H 0.21 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.43 3.52 9.06 -74.06 -0.67 2.85 16 40 H 0.18 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -82.65 343.52 1.71 -80.94 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.44 Total: 6.52 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 7.79 Total: 27.01 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -5.92 Total: -109.18 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -2.62 Total: -51.44 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -82.65 1.71 -80.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611194321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.504 kcal (2) G-P(sol) polarization free energy of solvation -82.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds