Wall clock time and date at job start Fri Apr 10 2020 14:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99771 * 2 1 4 4 C 1.52997 * 109.46648 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47016 * 65.00358 * 4 3 2 6 6 C 1.46495 * 120.00046 * 264.88173 * 5 4 3 7 7 C 1.50694 * 109.47466 * 262.73865 * 6 5 4 8 8 H 1.08005 * 120.00088 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99978 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00059 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99991 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46837 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47046 * 120.00328 * 11 9 7 14 14 H 1.48505 * 109.47089 * 240.00473 * 11 9 7 15 15 C 1.34775 * 119.99984 * 84.88803 * 5 4 3 16 16 O 1.21566 * 120.00407 * 2.96958 * 15 5 4 17 17 C 1.47851 * 120.00267 * 182.97082 * 15 5 4 18 18 C 1.39720 * 119.44438 * 173.11855 * 17 15 5 19 19 C 1.36993 * 119.59392 * 180.27896 * 18 17 15 20 20 C 1.39897 * 118.37111 * 359.45959 * 19 18 17 21 21 N 1.35419 * 133.68880 * 180.25141 * 20 19 18 22 22 C 1.30927 * 109.57387 * 180.02562 * 21 20 19 23 23 O 1.35171 * 125.00092 * 180.02562 * 22 21 20 24 24 N 1.36390 * 110.00291 * 359.97438 * 22 21 20 25 25 H 0.97006 * 126.32055 * 179.97438 * 24 22 21 26 26 C 1.38258 * 107.36375 * 359.97438 * 24 22 21 27 27 N 1.31762 * 133.72042 * 179.97438 * 26 24 22 28 28 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47586 * 300.00020 * 1 2 3 30 30 H 1.09004 * 109.47252 * 60.00185 * 1 2 3 31 31 H 1.09004 * 109.46851 * 59.99777 * 3 2 1 32 32 H 1.09000 * 109.46950 * 299.99948 * 3 2 1 33 33 H 1.08998 * 109.47458 * 305.00088 * 4 3 2 34 34 H 1.09008 * 109.46827 * 185.00227 * 4 3 2 35 35 H 1.09001 * 109.46890 * 22.73969 * 6 5 4 36 36 H 1.09006 * 109.47142 * 142.73285 * 6 5 4 37 37 H 0.97003 * 119.99879 * 179.97438 * 10 9 7 38 38 H 1.07999 * 120.20006 * 0.04045 * 18 17 15 39 39 H 1.08001 * 120.81543 * 179.73563 * 19 18 17 40 40 H 0.96699 * 113.99875 * 269.99758 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2141 -0.8804 -1.3083 7 6 5.6850 -1.1552 -1.1296 8 1 6.3741 -0.3358 -0.9879 9 6 6.1510 -2.4527 -1.1471 10 7 5.3119 -3.4505 -1.3201 11 14 7.9744 -2.7933 -0.9263 12 1 8.7000 -1.5095 -0.7512 13 1 8.1773 -3.6438 0.2740 14 1 8.4953 -3.4973 -2.1257 15 6 4.1641 1.3219 -2.3495 16 8 4.0195 2.5274 -2.2882 17 6 4.5456 0.6873 -3.6292 18 6 4.5960 1.4612 -4.7914 19 6 4.9436 0.8752 -5.9799 20 6 5.2496 -0.4899 -5.9835 21 7 5.6251 -1.3618 -6.9493 22 6 5.7927 -2.5503 -6.4262 23 8 6.1678 -3.6532 -7.1117 24 7 5.5342 -2.5116 -5.0876 25 1 5.5854 -3.2585 -4.4707 26 6 5.1858 -1.2114 -4.7721 27 7 4.8418 -0.6067 -3.6530 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8507 0.5685 0.8427 34 1 3.9784 2.1766 0.0903 35 1 3.6534 -1.3727 -0.5137 36 1 3.8875 -1.2642 -2.2749 37 1 5.6398 -4.3633 -1.3328 38 1 4.3587 2.5141 -4.7537 39 1 4.9847 1.4537 -6.8909 40 1 5.4289 -4.1638 -7.4702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411747657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:41 Heat of formation + Delta-G solvation = -25.457425 kcal Electronic energy + Delta-G solvation = -27753.149968 eV Core-core repulsion = 23763.015504 eV Total energy + Delta-G solvation = -3990.134464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.37608 -41.12578 -39.49186 -38.65113 -37.73423 -36.69970 -34.72167 -34.45104 -32.39733 -31.54795 -30.19614 -28.73609 -27.15852 -25.68856 -24.63462 -24.49856 -23.47380 -22.70130 -20.86564 -20.22681 -18.93420 -18.60359 -18.42217 -18.02109 -17.42936 -17.13728 -17.04794 -16.53365 -16.29065 -16.11037 -15.82433 -15.59743 -15.23662 -14.79529 -14.47262 -14.17078 -14.07508 -13.52758 -13.32757 -13.23321 -13.15353 -12.94971 -12.78873 -12.75519 -12.63826 -12.27937 -12.16717 -12.02085 -11.71046 -11.58197 -11.11818 -10.57214 -10.53013 -9.94353 -9.69771 -9.47252 -9.27429 -8.05112 -6.08831 -0.55018 0.23539 1.13944 1.30652 1.37073 1.37151 1.44761 1.93087 2.25009 2.43747 2.55689 2.91266 2.97896 3.25398 3.26633 3.50497 3.88799 3.90751 4.11111 4.17446 4.25488 4.41996 4.54383 4.56947 4.59011 4.64125 4.73363 4.85270 4.91121 5.03982 5.07555 5.16011 5.47490 5.59065 5.70611 5.93805 5.97177 6.29629 6.30561 6.47526 6.53063 6.58563 6.82079 6.99806 7.30585 7.52830 9.01343 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.005867 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.450219 B = 4771.207615 C = 6144.080993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.056 3.944 4 C 0.112 3.888 5 N -0.573 5.573 6 C 0.258 3.742 7 C -0.493 4.493 8 H 0.032 0.968 9 C 0.037 3.963 10 N -0.910 5.910 11 Si 0.924 3.076 12 H -0.284 1.284 13 H -0.279 1.279 14 H -0.282 1.282 15 C 0.563 3.437 16 O -0.579 6.579 17 C 0.083 3.917 18 C -0.115 4.115 19 C -0.033 4.033 20 C 0.023 3.977 21 N -0.501 5.501 22 C 0.482 3.518 23 O -0.434 6.434 24 N -0.580 5.580 25 H 0.433 0.567 26 C 0.218 3.782 27 N -0.398 5.398 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.007 0.993 36 H 0.068 0.932 37 H 0.260 0.740 38 H 0.171 0.829 39 H 0.182 0.818 40 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 3.234 -6.818 9.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.022 4.022 4 C -0.011 4.011 5 N -0.301 5.301 6 C 0.137 3.863 7 C -0.533 4.533 8 H 0.050 0.950 9 C -0.162 4.162 10 N -0.551 5.551 11 Si 0.752 3.248 12 H -0.210 1.210 13 H -0.205 1.205 14 H -0.208 1.208 15 C 0.351 3.649 16 O -0.461 6.461 17 C -0.065 4.065 18 C -0.138 4.138 19 C -0.060 4.060 20 C -0.099 4.099 21 N -0.234 5.234 22 C 0.177 3.823 23 O -0.240 6.240 24 N -0.206 5.206 25 H 0.274 0.726 26 C -0.020 4.020 27 N -0.112 5.112 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.025 0.975 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.189 0.811 39 H 0.200 0.800 40 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -5.820 3.215 -6.804 9.514 hybrid contribution 0.589 -1.018 0.735 1.387 sum -5.231 2.197 -6.070 8.308 Atomic orbital electron populations 1.22868 0.79955 1.03289 1.00679 1.87998 1.21201 1.28452 1.95508 1.22935 0.93301 0.84710 1.01207 1.21635 0.93168 0.99711 0.86595 1.48181 1.61802 1.10887 1.09200 1.19587 0.94500 0.73689 0.98489 1.21395 0.93509 0.91600 1.46760 0.94985 1.25148 0.99200 0.96025 0.95795 1.70034 1.34451 0.98914 1.51743 0.86052 0.83350 0.77603 0.77809 1.20978 1.20531 1.20786 1.17968 0.77505 0.85699 0.83700 1.90655 1.56053 1.13771 1.85626 1.21049 1.01718 0.88593 0.95101 1.21666 0.99402 1.02250 0.90468 1.20626 0.95995 0.89760 0.99605 1.20059 1.04044 0.96247 0.89569 1.70590 1.23918 0.98742 1.30196 1.20325 0.94346 0.88830 0.78833 1.84781 1.36780 1.33805 1.68657 1.43220 1.57113 1.09770 1.10462 0.72576 1.19070 1.03895 0.86772 0.92263 1.67405 1.08559 1.09888 1.25389 0.89385 0.92260 0.93992 0.89670 0.93812 0.89895 0.88483 0.97473 0.91501 0.93013 0.81133 0.80032 0.69818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.41 10.31 -148.98 -1.54 -15.95 16 3 C 0.06 1.75 6.25 71.98 0.45 2.20 16 4 C 0.11 4.09 5.73 86.38 0.50 4.59 16 5 N -0.57 -25.17 2.44 -829.56 -2.02 -27.19 16 6 C 0.26 12.90 4.64 85.63 0.40 13.30 16 7 C -0.49 -26.35 7.90 25.60 0.20 -26.14 16 8 H 0.03 1.80 7.81 -2.91 -0.02 1.78 16 9 C 0.04 1.96 5.46 84.65 0.46 2.42 16 10 N -0.91 -48.46 13.29 21.45 0.28 -48.18 16 11 Si 0.92 42.97 29.54 68.60 2.03 45.00 16 12 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 C 0.56 24.32 7.54 86.79 0.65 24.97 16 16 O -0.58 -24.83 15.95 -3.92 -0.06 -24.89 16 17 C 0.08 3.41 6.62 41.91 0.28 3.69 16 18 C -0.11 -3.69 9.55 22.34 0.21 -3.48 16 19 C -0.03 -0.95 10.16 22.38 0.23 -0.72 16 20 C 0.02 0.80 7.24 39.70 0.29 1.09 16 21 N -0.50 -16.33 11.30 -306.04 -3.46 -19.78 16 22 C 0.48 14.34 9.39 179.70 1.69 16.03 16 23 O -0.43 -9.14 13.62 -84.50 -1.15 -10.29 16 24 N -0.58 -20.29 6.25 -307.04 -1.92 -22.21 16 25 H 0.43 15.33 8.96 -92.70 -0.83 14.50 16 26 C 0.22 8.65 8.46 134.00 1.13 9.78 16 27 N -0.40 -17.51 4.93 -181.67 -0.90 -18.41 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 3.09 8.03 -2.39 -0.02 3.07 16 34 H 0.10 3.32 7.54 -2.38 -0.02 3.30 16 35 H 0.01 0.40 7.78 -2.39 -0.02 0.38 16 36 H 0.07 3.56 5.27 -3.00 -0.02 3.54 16 37 H 0.26 13.14 8.31 -92.71 -0.77 12.37 16 38 H 0.17 4.70 7.62 -2.91 -0.02 4.68 16 39 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.44 3.74 9.06 -74.06 -0.67 3.06 16 Total: -1.00 -69.84 348.06 -1.39 -71.23 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -0.39 Total: 20.99 kcal Atomic # 6 Polarization: 41.95 SS G_CDS: 7.74 Total: 49.68 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -8.01 Total: -135.77 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -2.75 Total: -51.13 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -69.84 -1.39 -71.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411747657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.768 kcal (2) G-P(sol) polarization free energy of solvation -69.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds