Wall clock time and date at job start Fri Apr 10 2020 14:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42909 * 113.99889 * 2 1 4 4 C 1.52992 * 109.46944 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47284 * 65.00225 * 4 3 2 6 6 C 1.46498 * 119.99715 * 269.99610 * 5 4 3 7 7 C 1.50698 * 109.47204 * 275.67956 * 6 5 4 8 8 H 1.08003 * 120.00019 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00301 * 180.02562 * 7 6 5 10 10 N 1.31505 * 120.00299 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99568 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47116 * 90.00467 * 11 9 7 13 13 H 1.48500 * 109.47158 * 210.00253 * 11 9 7 14 14 H 1.48499 * 109.47501 * 330.00576 * 11 9 7 15 15 C 1.34778 * 119.99729 * 89.99522 * 5 4 3 16 16 O 1.21573 * 120.00113 * 4.74588 * 15 5 4 17 17 C 1.47646 * 119.99640 * 184.73686 * 15 5 4 18 18 C 1.39805 * 121.08408 * 307.04424 * 17 15 5 19 19 C 1.38168 * 119.36481 * 179.72686 * 18 17 15 20 20 N 1.31838 * 121.55628 * 359.97438 * 19 18 17 21 21 C 1.31983 * 121.98255 * 0.02594 * 20 19 18 22 22 N 1.38263 * 133.71293 * 179.97438 * 21 20 19 23 23 H 0.97002 * 126.38590 * 359.97438 * 22 21 20 24 24 C 1.36394 * 107.23208 * 180.02562 * 22 21 20 25 25 O 1.35180 * 125.05758 * 179.97438 * 24 22 21 26 26 N 1.30990 * 109.88142 * 359.96432 * 24 22 21 27 27 C 1.34632 * 109.66802 * 0.03674 * 26 24 22 28 28 H 1.08999 * 109.47737 * 60.00135 * 1 2 3 29 29 H 1.09009 * 109.47101 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47469 * 300.00002 * 1 2 3 31 31 H 1.09006 * 109.46716 * 59.99881 * 3 2 1 32 32 H 1.08994 * 109.47044 * 300.00114 * 3 2 1 33 33 H 1.09002 * 109.47308 * 304.99930 * 4 3 2 34 34 H 1.09003 * 109.46780 * 184.99778 * 4 3 2 35 35 H 1.08998 * 109.47234 * 35.68190 * 6 5 4 36 36 H 1.08998 * 109.46967 * 155.68149 * 6 5 4 37 37 H 0.97008 * 120.00384 * 179.97438 * 10 9 7 38 38 H 1.08002 * 120.31407 * 359.70500 * 18 17 15 39 39 H 1.08001 * 119.21816 * 180.02562 * 19 18 17 40 40 H 0.96704 * 113.99768 * 269.93245 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1062 -0.8924 -1.3403 7 6 5.4533 -1.3103 -0.8095 8 1 6.1437 -0.5655 -0.4420 9 6 5.8046 -2.6435 -0.7931 10 7 6.9799 -3.0083 -0.3295 11 14 4.6102 -3.9318 -1.4282 12 1 4.8385 -4.1456 -2.8799 13 1 4.8255 -5.2081 -0.7001 14 1 3.2172 -3.4660 -1.2095 15 6 4.2632 1.3331 -2.3200 16 8 4.2392 2.5446 -2.2213 17 6 4.6065 0.7042 -3.6109 18 6 5.6174 -0.2575 -3.6991 19 6 5.9055 -0.8273 -4.9244 20 7 5.2488 -0.4861 -6.0155 21 6 4.2844 0.4148 -5.9980 22 7 3.4557 0.9462 -6.9688 23 1 3.4528 0.7171 -7.9114 24 6 2.6436 1.8535 -6.3543 25 8 1.6915 2.5874 -6.9726 26 7 2.9234 1.9077 -5.0757 27 6 3.9214 1.0493 -4.7935 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6884 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8506 0.5686 0.8427 34 1 3.9783 2.1767 0.0902 35 1 3.3208 -1.3640 -0.7497 36 1 4.0138 -1.2022 -2.3812 37 1 7.2269 -3.9463 -0.3176 38 1 6.1681 -0.5519 -2.8179 39 1 6.6867 -1.5703 -4.9897 40 1 2.0066 3.4378 -7.3084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411749475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:53 Heat of formation + Delta-G solvation = -12.425900 kcal Electronic energy + Delta-G solvation = -27711.160874 eV Core-core repulsion = 23721.591499 eV Total energy + Delta-G solvation = -3989.569375 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.31535 -39.53685 -38.45028 -37.40042 -36.89690 -35.03329 -33.61300 -32.62443 -31.45253 -29.69511 -29.11295 -27.64849 -26.07980 -24.42537 -23.01841 -22.66599 -22.51637 -21.54470 -19.65916 -18.89299 -17.80837 -17.20131 -17.00658 -16.78609 -16.10442 -15.93177 -15.71274 -15.32355 -14.96890 -14.76522 -14.41678 -14.20381 -13.99341 -13.60633 -13.17872 -12.72001 -12.54752 -12.31535 -12.19172 -11.92409 -11.78778 -11.60724 -11.50377 -11.05707 -10.98231 -10.82340 -10.75940 -10.53277 -10.22789 -9.69603 -9.58352 -9.39115 -8.90416 -8.74891 -8.51877 -8.28052 -7.75417 -6.23755 -4.24723 0.64645 1.44137 2.09418 2.61159 3.19979 3.26615 3.29938 3.35805 3.58219 3.67928 4.05223 4.14969 4.28807 4.41532 4.79022 4.94050 5.07780 5.12311 5.35473 5.37324 5.46944 5.61742 5.63943 5.68565 5.77258 5.81072 5.98458 6.07653 6.14620 6.35609 6.40629 6.49147 6.51867 6.88088 6.93145 7.30595 7.39532 7.43657 7.48885 7.68247 7.99647 8.07950 8.39724 8.76683 8.85351 9.36469 10.87506 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.006127 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.443870 B = 4569.056281 C = 6103.315696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.046 3.954 4 C 0.123 3.877 5 N -0.574 5.574 6 C 0.203 3.797 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.084 3.916 10 N -0.886 5.886 11 Si 0.860 3.140 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.260 1.260 15 C 0.565 3.435 16 O -0.548 6.548 17 C -0.022 4.022 18 C -0.126 4.126 19 C 0.136 3.864 20 N -0.478 5.478 21 C 0.239 3.761 22 N -0.590 5.590 23 H 0.425 0.575 24 C 0.453 3.547 25 O -0.438 6.438 26 N -0.462 5.462 27 C 0.051 3.949 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.028 0.972 37 H 0.267 0.733 38 H 0.188 0.812 39 H 0.175 0.825 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 6.591 -9.348 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.032 4.032 4 C 0.000 4.000 5 N -0.303 5.303 6 C 0.082 3.918 7 C -0.580 4.580 8 H 0.100 0.900 9 C -0.121 4.121 10 N -0.523 5.523 11 Si 0.686 3.314 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.185 1.185 15 C 0.352 3.648 16 O -0.427 6.427 17 C -0.036 4.036 18 C -0.148 4.148 19 C -0.029 4.029 20 N -0.192 5.192 21 C 0.003 3.997 22 N -0.218 5.218 23 H 0.265 0.735 24 C 0.149 3.851 25 O -0.240 6.240 26 N -0.193 5.193 27 C -0.071 4.071 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.205 0.795 39 H 0.192 0.808 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -8.739 6.658 -9.304 14.397 hybrid contribution -0.515 -0.511 -0.913 1.166 sum -9.253 6.148 -10.217 15.094 Atomic orbital electron populations 1.22680 0.82115 1.02276 0.99381 1.88011 1.18753 1.27738 1.95262 1.23065 0.95157 0.84835 1.00094 1.21397 0.90990 1.00041 0.87593 1.47727 1.63480 1.08989 1.10086 1.20015 0.98579 0.75388 0.97804 1.21368 0.99756 0.93759 1.43160 0.89997 1.24786 0.94823 0.98083 0.94376 1.69883 1.20087 1.17361 1.44999 0.87063 0.82850 0.81774 0.79682 1.19642 1.20884 1.18462 1.17861 0.77233 0.86296 0.83388 1.90718 1.53791 1.13577 1.84612 1.19536 0.95924 0.96204 0.91893 1.23161 0.96989 0.92999 1.01666 1.22632 0.96820 0.97408 0.86006 1.66165 1.06393 1.13303 1.33351 1.18480 0.95239 0.98137 0.87838 1.42918 1.30691 1.37100 1.11084 0.73489 1.20205 0.88146 0.90725 0.86062 1.84813 1.29824 1.34447 1.74874 1.70362 1.15818 1.22819 1.10309 1.18972 0.96881 0.97863 0.93404 0.94546 0.90046 0.94526 0.92862 0.93150 0.88765 0.88884 0.93365 0.95383 0.92267 0.79523 0.80829 0.73173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.73 9.45 -35.23 -0.33 -7.07 16 3 C 0.05 0.76 6.28 37.15 0.23 1.00 16 4 C 0.12 2.27 5.87 -4.04 -0.02 2.25 16 5 N -0.57 -12.20 2.42 -176.25 -0.43 -12.63 16 6 C 0.20 4.60 3.61 -5.20 -0.02 4.58 16 7 C -0.54 -13.54 7.61 -34.44 -0.26 -13.80 16 8 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 9 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 10 N -0.89 -24.36 13.96 55.43 0.77 -23.59 16 11 Si 0.86 19.63 27.47 -169.99 -4.67 14.96 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 14 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 15 C 0.57 12.43 7.25 -12.42 -0.09 12.34 16 16 O -0.55 -12.92 16.64 5.30 0.09 -12.83 16 17 C -0.02 -0.46 4.80 -104.44 -0.50 -0.96 16 18 C -0.13 -2.40 7.75 -39.02 -0.30 -2.70 16 19 C 0.14 2.25 11.14 -17.57 -0.20 2.06 16 20 N -0.48 -8.03 10.35 -12.25 -0.13 -8.16 16 21 C 0.24 4.04 8.46 -155.42 -1.32 2.73 16 22 N -0.59 -7.61 6.26 -13.33 -0.08 -7.69 16 23 H 0.43 3.84 8.96 -40.82 -0.37 3.48 16 24 C 0.45 6.32 9.39 -88.72 -0.83 5.49 16 25 O -0.44 -4.32 13.62 -17.24 -0.23 -4.55 16 26 N -0.46 -8.58 11.26 -12.06 -0.14 -8.71 16 27 C 0.05 1.00 6.99 -84.60 -0.59 0.40 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.73 8.07 -51.93 -0.42 1.32 16 34 H 0.09 1.65 7.36 -51.93 -0.38 1.26 16 35 H 0.05 1.14 6.09 -51.93 -0.32 0.82 16 36 H 0.03 0.64 5.05 -51.93 -0.26 0.38 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.19 3.85 5.40 -52.49 -0.28 3.56 16 39 H 0.17 2.35 8.06 -52.49 -0.42 1.93 16 40 H 0.41 1.67 9.06 45.56 0.41 2.09 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -34.09 342.94 -6.61 -40.70 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -3.74 Total: 7.41 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: -2.89 Total: 16.99 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.00 Total: -60.78 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.48 Total: -24.45 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.09 -6.61 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411749475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.270 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds