Wall clock time and date at job start Fri Apr 10 2020 14:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35814 * 116.99718 * 2 1 4 4 C 1.40725 * 119.74741 * 179.97438 * 3 2 1 5 5 C 1.36005 * 119.74077 * 180.02562 * 4 3 2 6 6 C 1.40978 * 119.28593 * 0.02562 * 5 4 3 7 7 O 1.22092 * 120.24292 * 179.97438 * 6 5 4 8 8 N 1.34826 * 119.51543 * 359.97438 * 6 5 4 9 9 C 1.46491 * 119.89761 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.46957 * 90.00150 * 9 8 6 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50697 * 109.46949 * 90.00203 * 13 12 10 15 15 H 1.08004 * 120.00186 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00081 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00096 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47135 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47061 * 119.99902 * 18 16 14 21 21 H 1.48503 * 109.47075 * 240.00004 * 18 16 14 22 22 C 1.46506 * 120.00264 * 0.28128 * 12 10 9 23 23 C 1.52998 * 109.47320 * 89.99349 * 22 12 10 24 24 C 1.47196 * 109.47171 * 180.02562 * 23 22 12 25 25 N 9.90333 * 79.42818 * 10.74251 * 2 1 3 26 26 N 1.30944 * 119.75289 * 0.27704 * 3 2 1 27 27 H 1.09007 * 109.47106 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47462 * 299.99642 * 1 2 3 29 29 H 1.08997 * 109.47440 * 60.00073 * 1 2 3 30 30 H 1.07999 * 120.12983 * 0.02846 * 4 3 2 31 31 H 1.08000 * 120.36297 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.47166 * 330.00416 * 9 8 6 33 33 H 1.08994 * 109.47507 * 210.00123 * 9 8 6 34 34 H 1.09001 * 109.47567 * 210.00057 * 13 12 10 35 35 H 1.09005 * 109.47076 * 330.00563 * 13 12 10 36 36 H 0.96991 * 119.99957 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.46996 * 209.99677 * 22 12 10 38 38 H 1.09001 * 109.46578 * 329.99540 * 22 12 10 39 39 H 1.08997 * 109.47106 * 300.00561 * 23 22 12 40 40 H 1.09004 * 109.46895 * 60.00075 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 3.4512 1.2777 0.0005 5 6 4.0684 2.4896 0.0011 6 6 3.2857 3.6621 0.0016 7 8 3.8216 4.7592 0.0026 8 7 1.9411 3.5632 0.0011 9 6 1.1197 4.7762 0.0022 10 6 0.8385 5.1937 -1.4183 11 8 1.2803 4.5419 -2.3407 12 7 0.0909 6.2879 -1.6636 13 6 -0.1876 6.6904 -3.0444 14 6 -1.4565 6.0275 -3.5146 15 1 -2.0014 5.3722 -2.8511 16 6 -1.9221 6.2574 -4.7919 17 7 -1.2584 7.0549 -5.6001 18 14 -3.4955 5.4362 -5.3746 19 1 -4.0471 4.5931 -4.2837 20 1 -4.4879 6.4760 -5.7473 21 1 -3.2018 4.5860 -6.5563 22 6 -0.4432 7.0751 -0.5493 23 6 0.5623 8.1622 -0.1647 24 6 0.0259 8.9527 0.9552 25 7 -0.3879 9.5646 1.8146 26 7 1.3276 2.3052 0.0055 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 4.0375 0.3707 0.0005 31 1 5.1465 2.5531 0.0019 32 1 1.6528 5.5755 0.5171 33 1 0.1789 4.5775 0.5155 34 1 -0.3046 7.7731 -3.0908 35 1 0.6401 6.3866 -3.6853 36 1 -1.5860 7.2170 -6.4985 37 1 -1.3827 7.5389 -0.8497 38 1 -0.6174 6.4223 0.3060 39 1 1.5018 7.6983 0.1356 40 1 0.7365 8.8150 -1.0201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459041973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:48 Heat of formation + Delta-G solvation = 2.535643 kcal Electronic energy + Delta-G solvation = -26818.131120 eV Core-core repulsion = 22829.210526 eV Total energy + Delta-G solvation = -3988.920594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.22022 -39.50909 -38.89303 -36.90989 -36.56689 -35.32681 -34.25601 -32.90051 -31.20419 -30.87272 -29.13850 -27.81537 -26.64150 -24.42271 -24.04434 -23.26314 -22.50910 -19.20458 -18.81334 -18.18838 -17.65558 -17.00252 -16.68195 -16.50345 -16.27715 -16.06033 -15.25680 -15.09136 -14.86913 -14.71007 -14.52556 -14.12848 -13.94996 -13.65401 -13.40050 -13.07729 -12.70434 -12.60692 -12.46409 -12.33042 -12.16144 -11.92745 -11.68626 -11.37887 -11.30330 -11.17634 -10.99463 -10.87062 -10.67011 -10.36060 -10.22611 -9.83360 -9.72870 -9.23908 -8.50286 -8.39140 -7.91557 -6.11325 -4.16054 0.26170 1.75367 1.84100 2.74613 2.82504 2.84389 3.16940 3.25558 3.25767 3.33948 3.37064 3.63972 3.99132 4.18123 4.38908 4.48902 4.57360 4.85343 5.00813 5.02214 5.07956 5.13198 5.17393 5.21860 5.23734 5.24427 5.45951 5.50002 5.50661 5.65334 5.80542 5.93359 6.06003 6.80487 6.87253 7.31570 7.37863 7.52029 7.58707 7.83704 7.86121 8.13316 8.16427 8.75517 8.91265 9.49327 10.96962 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.004703 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.855145 B = 5951.923002 C = 7930.191653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.297 6.297 3 C 0.285 3.715 4 C -0.078 4.078 5 C -0.137 4.137 6 C 0.499 3.501 7 O -0.534 6.534 8 N -0.370 5.370 9 C 0.104 3.896 10 C 0.499 3.501 11 O -0.520 6.520 12 N -0.593 5.593 13 C 0.246 3.754 14 C -0.528 4.528 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.115 3.885 23 C -0.054 4.054 24 C 0.219 3.781 25 N -0.445 5.445 26 N -0.279 5.279 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.157 0.843 31 H 0.171 0.829 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.475 -10.843 13.805 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.199 6.199 3 C 0.070 3.930 4 C -0.102 4.102 5 C -0.166 4.166 6 C 0.294 3.706 7 O -0.412 6.412 8 N -0.192 5.192 9 C -0.021 4.021 10 C 0.283 3.717 11 O -0.395 6.395 12 N -0.325 5.325 13 C 0.127 3.873 14 C -0.567 4.567 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.011 4.011 23 C -0.096 4.096 24 C -0.099 4.099 25 N -0.122 5.122 26 N -0.113 5.113 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.175 0.825 31 H 0.188 0.812 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.573 -9.547 14.379 18.137 hybrid contribution -0.274 -0.763 -0.893 1.206 sum 5.300 -10.310 13.486 17.783 Atomic orbital electron populations 1.23039 0.76451 1.03741 1.03184 1.86323 1.23442 1.21770 1.88387 1.20375 0.90395 0.85541 0.96685 1.21382 0.91701 1.00363 0.96732 1.22628 1.02581 0.90761 1.00592 1.17564 0.81855 0.91490 0.79711 1.90997 1.70288 1.28257 1.51645 1.48484 1.05329 1.02311 1.63088 1.21705 0.97288 0.85124 0.97947 1.20387 0.79498 0.81634 0.90165 1.90715 1.50962 1.52307 1.45538 1.48176 1.49989 1.25359 1.08980 1.19386 0.97348 0.95667 0.74905 1.21436 1.08098 1.28544 0.98613 0.92291 1.24922 0.97486 0.95181 0.96405 1.69930 1.39102 1.36531 1.07589 0.86461 0.82973 0.79281 0.78809 1.19801 1.20929 1.20922 1.21367 0.96840 0.92564 0.90372 1.19928 1.00287 0.97027 0.92318 1.28951 0.93363 0.93600 0.94034 1.81091 1.09189 1.10080 1.11864 1.74955 1.26054 0.90089 1.20190 0.88009 0.91922 0.91439 0.82506 0.81159 0.85738 0.86259 0.94454 0.93568 0.92689 0.88320 0.90705 0.87318 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.39 101.05 1.05 1.32 16 2 O -0.30 -3.13 10.49 -19.16 -0.20 -3.33 16 3 C 0.29 3.41 7.61 -16.99 -0.13 3.28 16 4 C -0.08 -0.74 10.00 -39.44 -0.39 -1.14 16 5 C -0.14 -1.51 10.01 -39.35 -0.39 -1.90 16 6 C 0.50 7.63 7.50 -15.20 -0.11 7.51 16 7 O -0.53 -9.51 16.71 4.83 0.08 -9.43 16 8 N -0.37 -5.66 3.00 -64.53 -0.19 -5.85 16 9 C 0.10 1.49 4.74 -5.20 -0.02 1.47 16 10 C 0.50 9.57 7.74 -10.98 -0.09 9.48 16 11 O -0.52 -12.63 16.01 5.55 0.09 -12.54 16 12 N -0.59 -10.93 2.46 -175.06 -0.43 -11.36 16 13 C 0.25 5.84 5.16 -5.20 -0.03 5.82 16 14 C -0.53 -14.03 9.39 -34.44 -0.32 -14.36 16 15 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 18 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 C 0.11 1.50 5.17 -4.04 -0.02 1.48 16 23 C -0.05 -0.58 6.03 -29.52 -0.18 -0.76 16 24 C 0.22 2.67 15.42 -20.85 -0.32 2.35 16 25 N -0.44 -6.57 18.52 42.05 0.78 -5.79 16 26 N -0.28 -3.97 10.42 30.59 0.32 -3.65 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 29 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 30 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.51 6.49 -51.93 -0.34 1.17 16 33 H 0.12 1.37 7.40 -51.93 -0.38 0.99 16 34 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 38 H 0.07 0.77 6.43 -51.93 -0.33 0.43 16 39 H 0.11 1.03 7.24 -51.93 -0.38 0.66 16 40 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -36.93 362.21 -4.18 -41.10 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.73 Total: -2.09 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: -1.06 Total: 16.17 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 1.21 Total: -51.44 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.03 Total: -25.30 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.93 -4.18 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459041973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.638 kcal (2) G-P(sol) polarization free energy of solvation -36.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds