Wall clock time and date at job start Fri Apr 10 2020 14:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35814 * 116.99718 * 2 1 4 4 C 1.40725 * 119.74741 * 179.97438 * 3 2 1 5 5 C 1.36005 * 119.74077 * 180.02562 * 4 3 2 6 6 C 1.40978 * 119.28593 * 0.02562 * 5 4 3 7 7 O 1.22092 * 120.24292 * 179.97438 * 6 5 4 8 8 N 1.34826 * 119.51543 * 359.97438 * 6 5 4 9 9 C 1.46491 * 119.89761 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.46957 * 90.00150 * 9 8 6 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50697 * 109.46949 * 90.00203 * 13 12 10 15 15 H 1.08004 * 120.00186 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00081 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00096 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47135 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47061 * 119.99902 * 18 16 14 21 21 H 1.48503 * 109.47075 * 240.00004 * 18 16 14 22 22 C 1.46506 * 120.00264 * 0.28128 * 12 10 9 23 23 C 1.52998 * 109.47320 * 89.99349 * 22 12 10 24 24 C 1.47196 * 109.47171 * 180.02562 * 23 22 12 25 25 N 9.90333 * 79.42818 * 10.74251 * 2 1 3 26 26 N 1.30944 * 119.75289 * 0.27704 * 3 2 1 27 27 H 1.09007 * 109.47106 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47462 * 299.99642 * 1 2 3 29 29 H 1.08997 * 109.47440 * 60.00073 * 1 2 3 30 30 H 1.07999 * 120.12983 * 0.02846 * 4 3 2 31 31 H 1.08000 * 120.36297 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.47166 * 330.00416 * 9 8 6 33 33 H 1.08994 * 109.47507 * 210.00123 * 9 8 6 34 34 H 1.09001 * 109.47567 * 210.00057 * 13 12 10 35 35 H 1.09005 * 109.47076 * 330.00563 * 13 12 10 36 36 H 0.96991 * 119.99957 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.46996 * 209.99677 * 22 12 10 38 38 H 1.09001 * 109.46578 * 329.99540 * 22 12 10 39 39 H 1.08997 * 109.47106 * 300.00561 * 23 22 12 40 40 H 1.09004 * 109.46895 * 60.00075 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 3.4512 1.2777 0.0005 5 6 4.0684 2.4896 0.0011 6 6 3.2857 3.6621 0.0016 7 8 3.8216 4.7592 0.0026 8 7 1.9411 3.5632 0.0011 9 6 1.1197 4.7762 0.0022 10 6 0.8385 5.1937 -1.4183 11 8 1.2803 4.5419 -2.3407 12 7 0.0909 6.2879 -1.6636 13 6 -0.1876 6.6904 -3.0444 14 6 -1.4565 6.0275 -3.5146 15 1 -2.0014 5.3722 -2.8511 16 6 -1.9221 6.2574 -4.7919 17 7 -1.2584 7.0549 -5.6001 18 14 -3.4955 5.4362 -5.3746 19 1 -4.0471 4.5931 -4.2837 20 1 -4.4879 6.4760 -5.7473 21 1 -3.2018 4.5860 -6.5563 22 6 -0.4432 7.0751 -0.5493 23 6 0.5623 8.1622 -0.1647 24 6 0.0259 8.9527 0.9552 25 7 -0.3879 9.5646 1.8146 26 7 1.3276 2.3052 0.0055 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 4.0375 0.3707 0.0005 31 1 5.1465 2.5531 0.0019 32 1 1.6528 5.5755 0.5171 33 1 0.1789 4.5775 0.5155 34 1 -0.3046 7.7731 -3.0908 35 1 0.6401 6.3866 -3.6853 36 1 -1.5860 7.2170 -6.4985 37 1 -1.3827 7.5389 -0.8497 38 1 -0.6174 6.4223 0.3060 39 1 1.5018 7.6983 0.1356 40 1 0.7365 8.8150 -1.0201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459041973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:48 Heat of formation + Delta-G solvation = -25.607152 kcal Electronic energy + Delta-G solvation = -26819.351483 eV Core-core repulsion = 22829.210526 eV Total energy + Delta-G solvation = -3990.140957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.25424 -40.75949 -40.01980 -38.06837 -37.61340 -36.76925 -35.32338 -34.79738 -32.29390 -32.14411 -30.38995 -29.00029 -27.98277 -25.52770 -25.34418 -24.49257 -23.88238 -20.50266 -19.79817 -19.23265 -18.88425 -18.38567 -18.24160 -17.74125 -17.39722 -17.11849 -16.64226 -16.26710 -16.12989 -15.85173 -15.70323 -15.53580 -14.85491 -14.80728 -14.42621 -14.36437 -14.31780 -13.69561 -13.60687 -13.57387 -13.37067 -13.18780 -12.95011 -12.79378 -12.73190 -12.56559 -12.39332 -12.19646 -12.16380 -11.89388 -11.66773 -11.21471 -10.89032 -10.69475 -10.60998 -9.56343 -9.51131 -8.19657 -6.32069 -0.61447 0.76633 0.84063 1.38472 1.40541 1.51317 1.62024 1.79733 1.84447 1.98957 2.15821 2.37034 2.45752 3.06436 3.08151 3.13275 3.63115 3.66939 3.82225 3.98238 4.06396 4.15854 4.18416 4.39394 4.42253 4.43858 4.54166 4.63418 4.78059 4.80175 4.87244 4.97550 5.02618 5.09716 5.30109 5.56817 5.83098 5.94043 6.09892 6.48509 6.57941 6.63190 6.77867 6.80367 7.26799 7.41944 8.87803 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.004703 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.855145 B = 5951.923002 C = 7930.191653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.294 6.294 3 C 0.286 3.714 4 C -0.061 4.061 5 C -0.145 4.145 6 C 0.483 3.517 7 O -0.573 6.573 8 N -0.381 5.381 9 C 0.112 3.888 10 C 0.493 3.507 11 O -0.582 6.582 12 N -0.592 5.592 13 C 0.261 3.739 14 C -0.537 4.537 15 H 0.056 0.944 16 C 0.010 3.990 17 N -0.927 5.927 18 Si 0.960 3.040 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.286 1.286 22 C 0.110 3.890 23 C -0.042 4.042 24 C 0.248 3.752 25 N -0.485 5.485 26 N -0.309 5.309 27 H 0.134 0.866 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.203 0.797 31 H 0.200 0.800 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.038 0.962 35 H -0.001 1.001 36 H 0.265 0.735 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.225 -12.631 15.542 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.195 6.195 3 C 0.071 3.929 4 C -0.084 4.084 5 C -0.173 4.173 6 C 0.280 3.720 7 O -0.453 6.453 8 N -0.202 5.202 9 C -0.013 4.013 10 C 0.280 3.720 11 O -0.461 6.461 12 N -0.323 5.323 13 C 0.140 3.860 14 C -0.576 4.576 15 H 0.074 0.926 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.785 3.215 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.212 1.212 22 C -0.015 4.015 23 C -0.083 4.083 24 C -0.070 4.070 25 N -0.163 5.163 26 N -0.144 5.144 27 H 0.152 0.848 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.220 0.780 31 H 0.217 0.783 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.147 0.853 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.296 -11.341 16.176 20.453 hybrid contribution -0.205 -0.306 -1.441 1.488 sum 5.091 -11.647 14.734 19.459 Atomic orbital electron populations 1.23225 0.75518 1.05628 1.02385 1.86354 1.24373 1.20881 1.87906 1.20894 0.91680 0.85483 0.94871 1.21782 0.90756 1.01530 0.94300 1.22852 1.03705 0.89635 1.01117 1.18285 0.82153 0.92426 0.79165 1.90959 1.70919 1.29742 1.53702 1.48566 1.05559 1.02851 1.63234 1.21764 0.99218 0.86010 0.94313 1.21283 0.78189 0.80708 0.91810 1.90676 1.53309 1.54228 1.47900 1.48044 1.49956 1.25928 1.08329 1.18837 0.94563 0.95199 0.77435 1.21746 1.08770 1.28252 0.98817 0.92573 1.25760 1.00667 0.95807 0.96694 1.70042 1.40782 1.37945 1.07964 0.85476 0.79381 0.78475 0.78137 1.18957 1.19775 1.21241 1.21642 0.96894 0.93322 0.89613 1.19824 1.00259 0.96261 0.91925 1.28900 0.92146 0.92649 0.93283 1.81133 1.10477 1.11373 1.13285 1.74936 1.26753 0.90284 1.22422 0.84826 0.91377 0.93551 0.78031 0.78252 0.83404 0.83201 0.94409 0.98325 0.92578 0.88800 0.87078 0.85285 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.39 113.37 1.18 1.60 16 2 O -0.29 -5.50 10.49 -91.46 -0.96 -6.46 16 3 C 0.29 6.29 7.61 85.43 0.65 6.94 16 4 C -0.06 -0.98 10.00 22.36 0.22 -0.76 16 5 C -0.15 -2.91 10.01 22.42 0.22 -2.69 16 6 C 0.48 14.46 7.50 84.90 0.64 15.10 16 7 O -0.57 -20.34 16.71 -5.62 -0.09 -20.43 16 8 N -0.38 -11.36 3.00 -476.09 -1.43 -12.79 16 9 C 0.11 3.06 4.74 85.64 0.41 3.47 16 10 C 0.49 19.08 7.74 87.66 0.68 19.76 16 11 O -0.58 -29.36 16.01 -3.04 -0.05 -29.41 16 12 N -0.59 -21.90 2.46 -826.15 -2.03 -23.93 16 13 C 0.26 12.84 5.16 85.63 0.44 13.29 16 14 C -0.54 -29.07 9.39 25.60 0.24 -28.83 16 15 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 16 C 0.01 0.54 5.46 84.66 0.46 1.00 16 17 N -0.93 -54.28 13.29 21.45 0.28 -54.00 16 18 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 C 0.11 2.69 5.17 86.38 0.45 3.14 16 23 C -0.04 -0.82 6.03 28.79 0.17 -0.65 16 24 C 0.25 5.60 15.42 89.47 1.38 6.98 16 25 N -0.48 -13.67 18.52 19.97 0.37 -13.30 16 26 N -0.31 -8.48 10.42 -170.57 -1.78 -10.26 16 27 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 29 H 0.05 0.93 8.11 -2.39 -0.02 0.91 16 30 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.20 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.15 3.30 6.49 -2.38 -0.02 3.28 16 33 H 0.15 3.09 7.40 -2.39 -0.02 3.07 16 34 H 0.04 1.84 8.07 -2.39 -0.02 1.82 16 35 H 0.00 -0.08 7.42 -2.38 -0.02 -0.10 16 36 H 0.27 14.66 8.31 -92.72 -0.77 13.89 16 37 H 0.09 2.45 8.07 -2.39 -0.02 2.43 16 38 H 0.11 1.95 6.43 -2.39 -0.02 1.93 16 39 H 0.13 2.14 7.24 -2.39 -0.02 2.13 16 40 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -84.64 362.21 4.57 -80.07 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.08 Total: 6.59 kcal Atomic # 6 Polarization: 31.19 SS G_CDS: 7.14 Total: 38.34 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -4.58 Total: -114.27 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -1.10 Total: -56.30 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -84.64 4.57 -80.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459041973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.462 kcal (2) G-P(sol) polarization free energy of solvation -84.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds