Wall clock time and date at job start Fri Apr 10 2020 14:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34642 * 116.99711 * 2 1 4 4 O 1.21386 * 119.99982 * 0.02562 * 3 2 1 5 5 C 1.48385 * 119.99989 * 179.97438 * 3 2 1 6 6 C 1.39538 * 120.50702 * 180.02562 * 5 3 2 7 7 C 1.38787 * 118.41660 * 179.97438 * 6 5 3 8 8 N 1.32137 * 119.24914 * 359.97438 * 7 6 5 9 9 C 1.32570 * 120.96471 * 0.02562 * 8 7 6 10 10 N 1.38428 * 119.13721 * 179.97438 * 9 8 7 11 11 C 1.46900 * 110.99986 * 124.29971 * 10 9 8 12 12 C 1.53241 * 109.33887 * 172.75121 * 11 10 9 13 13 N 1.47078 * 108.52382 * 53.83396 * 12 11 10 14 14 C 1.34768 * 120.88175 * 128.79189 * 13 12 11 15 15 O 1.21697 * 119.99928 * 174.71121 * 14 13 12 16 16 C 1.46370 * 120.00494 * 354.70902 * 14 13 12 17 17 H 1.08002 * 119.99780 * 351.25566 * 16 14 13 18 18 C 1.40047 * 120.00712 * 171.25129 * 16 14 13 19 19 N 1.30672 * 119.99400 * 358.53793 * 18 16 14 20 20 Si 1.86787 * 120.00598 * 178.53756 * 18 16 14 21 21 H 1.48503 * 109.47404 * 85.02904 * 20 18 16 22 22 H 1.48499 * 109.47419 * 205.03164 * 20 18 16 23 23 H 1.48498 * 109.47228 * 325.03205 * 20 18 16 24 24 C 1.47084 * 118.23426 * 308.81527 * 13 12 11 25 25 C 1.46901 * 110.99455 * 0.02562 * 10 9 8 26 26 N 1.32281 * 121.72760 * 359.97438 * 9 8 7 27 27 H 1.09001 * 109.46570 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46937 * 299.99907 * 1 2 3 29 29 H 1.08997 * 109.47159 * 59.99767 * 1 2 3 30 30 H 1.07991 * 120.79268 * 0.24826 * 6 5 3 31 31 H 1.07998 * 120.37632 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.49416 * 292.71387 * 11 10 9 33 33 H 1.09005 * 109.49019 * 52.79225 * 11 10 9 34 34 H 1.08995 * 109.62749 * 294.11637 * 12 11 10 35 35 H 1.09005 * 109.62680 * 173.53992 * 12 11 10 36 36 H 0.97002 * 119.99892 * 179.97438 * 19 18 16 37 37 H 1.09001 * 109.62751 * 291.47265 * 24 13 12 38 38 H 1.08992 * 109.62706 * 170.89692 * 24 13 12 39 39 H 1.08994 * 109.49450 * 307.20637 * 25 10 9 40 40 H 1.09005 * 109.49350 * 67.29543 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4021 2.2177 0.0005 5 6 3.5450 1.2774 0.0006 6 6 4.1895 2.5151 0.0011 7 6 5.5771 2.5372 0.0022 8 7 6.2410 1.3947 0.0032 9 6 5.6009 0.2338 0.0026 10 7 6.3342 -0.9402 0.0032 11 6 5.9568 -1.7962 1.1358 12 6 6.6540 -3.1540 1.0002 13 7 8.0989 -2.9243 0.8488 14 6 8.9874 -3.5695 1.6302 15 8 10.1807 -3.4414 1.4283 16 6 8.5174 -4.4241 2.7216 17 1 7.4718 -4.4287 2.9918 18 6 9.4235 -5.2358 3.4154 19 7 10.6836 -5.2518 3.0698 20 14 8.8309 -6.2957 4.8347 21 1 8.3043 -7.5801 4.3073 22 1 9.9629 -6.5662 5.7569 23 1 7.7541 -5.5834 5.5685 24 6 8.5481 -1.9714 -0.1775 25 6 7.7763 -0.6601 0.0049 26 7 4.2797 0.1680 0.0016 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 3.6219 3.4339 0.0051 31 1 6.1084 3.4775 0.0031 32 1 6.2627 -1.3216 2.0682 33 1 4.8763 -1.9407 1.1382 34 1 6.2722 -3.6757 0.1226 35 1 6.4698 -3.7510 1.8935 36 1 11.3113 -5.8137 3.5506 37 1 8.3485 -2.3794 -1.1684 38 1 9.6162 -1.7866 -0.0631 39 1 8.0158 0.0194 -0.8130 40 1 8.0566 -0.2016 0.9533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548519740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:11 Heat of formation + Delta-G solvation = -28.139184 kcal Electronic energy + Delta-G solvation = -26545.780896 eV Core-core repulsion = 22555.530142 eV Total energy + Delta-G solvation = -3990.250754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.68198 -40.50419 -38.80957 -36.95676 -36.60145 -34.25995 -33.78036 -32.55443 -31.19950 -30.75033 -28.47192 -27.23709 -26.07341 -25.66982 -23.64882 -22.97076 -21.82585 -20.87615 -19.22774 -18.59284 -18.09811 -17.04367 -16.89964 -16.80588 -16.20706 -15.78354 -15.46127 -15.40781 -14.56582 -14.44848 -14.30933 -14.19764 -14.00180 -13.91326 -13.70991 -13.29293 -12.55858 -12.47939 -11.91025 -11.61946 -11.46873 -11.33504 -11.26781 -11.17647 -11.15613 -11.09673 -10.98360 -10.80885 -10.71571 -10.40239 -10.23657 -10.08520 -9.52553 -8.89721 -8.49503 -7.64551 -7.31443 -6.24958 -4.69198 0.08382 0.70942 2.06348 2.09763 2.97611 3.11813 3.18728 3.21245 3.47486 3.76849 4.04619 4.21200 4.33760 4.48215 4.53153 4.62461 4.75996 4.83475 4.85214 5.13185 5.24465 5.24917 5.35439 5.55182 5.57848 5.67600 5.77189 5.83416 5.86379 6.01593 6.10759 6.35065 6.41445 6.44922 6.60829 6.71702 7.04380 7.26073 7.40928 7.50712 7.84935 8.06137 8.28967 8.97739 9.36188 10.52054 10.70315 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.003055 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.655732 B = 9164.273158 C =10264.951202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.329 6.329 3 C 0.527 3.473 4 O -0.491 6.491 5 C 0.170 3.830 6 C -0.209 4.209 7 C 0.181 3.819 8 N -0.529 5.529 9 C 0.502 3.498 10 N -0.453 5.453 11 C 0.051 3.949 12 C 0.127 3.873 13 N -0.646 5.646 14 C 0.562 3.438 15 O -0.576 6.576 16 C -0.546 4.546 17 H 0.073 0.927 18 C 0.088 3.912 19 N -0.769 5.769 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.265 1.265 24 C 0.122 3.878 25 C 0.058 3.942 26 N -0.487 5.487 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.160 0.840 31 H 0.181 0.819 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.269 0.731 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.113 12.943 -5.185 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.369 3.631 4 O -0.377 6.377 5 C 0.021 3.979 6 C -0.234 4.234 7 C 0.011 3.989 8 N -0.249 5.249 9 C 0.146 3.854 10 N -0.172 5.172 11 C -0.076 4.076 12 C 0.002 3.998 13 N -0.385 5.385 14 C 0.368 3.632 15 O -0.459 6.459 16 C -0.582 4.582 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.002 4.002 25 C -0.070 4.070 26 N -0.208 5.208 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.178 0.822 31 H 0.198 0.802 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.039 11.974 -5.664 20.802 hybrid contribution -1.004 0.762 1.101 1.673 sum -17.043 12.735 -4.563 21.760 Atomic orbital electron populations 1.23410 0.75588 1.04371 1.02666 1.86710 1.23545 1.31200 1.82823 1.20732 0.87472 0.82025 0.72874 1.90852 1.65573 1.36215 1.45087 1.20189 0.91066 0.89759 0.96881 1.22687 0.96874 0.99071 1.04726 1.23235 0.90512 0.96697 0.88441 1.68432 1.41570 0.98638 1.16241 1.21212 0.86074 0.88986 0.89106 1.58453 1.07180 1.09590 1.41957 1.22813 1.01702 0.94423 0.88616 1.21561 0.81939 0.93367 1.02906 1.48346 1.05446 1.46487 1.38262 1.18254 0.84497 0.79206 0.81272 1.90596 1.15977 1.66119 1.73182 1.20924 0.95375 1.25545 1.16370 0.90910 1.25716 0.94314 0.96033 0.97096 1.69991 1.02753 1.31308 1.35661 0.86397 0.79041 0.80405 0.81012 1.19584 1.20472 1.18911 1.21317 0.99413 0.87391 0.92109 1.22603 0.82642 0.99011 1.02696 1.67993 1.06532 1.31059 1.15251 0.87453 0.91578 0.91621 0.82248 0.80246 0.93134 0.88538 0.92527 0.87715 0.91979 0.92942 0.88750 0.89219 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.33 -3.70 10.42 -40.34 -0.42 -4.12 16 3 C 0.53 6.29 7.97 34.91 0.28 6.57 16 4 O -0.49 -6.15 16.21 -19.18 -0.31 -6.46 16 5 C 0.17 2.10 6.79 -82.67 -0.56 1.53 16 6 C -0.21 -2.02 9.71 -38.89 -0.38 -2.40 16 7 C 0.18 1.73 11.30 -17.22 -0.19 1.54 16 8 N -0.53 -7.04 8.64 -13.94 -0.12 -7.16 16 9 C 0.50 7.51 7.17 -322.95 -2.32 5.19 16 10 N -0.45 -7.28 4.69 -175.11 -0.82 -8.10 16 11 C 0.05 0.82 5.49 -3.70 -0.02 0.80 16 12 C 0.13 2.33 6.52 -3.60 -0.02 2.30 16 13 N -0.65 -14.42 3.01 -174.12 -0.52 -14.94 16 14 C 0.56 15.62 7.61 -12.99 -0.10 15.52 16 15 O -0.58 -18.29 14.57 5.19 0.08 -18.22 16 16 C -0.55 -14.86 8.84 -35.63 -0.31 -15.17 16 17 H 0.07 1.79 5.75 -52.49 -0.30 1.49 16 18 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 19 N -0.77 -22.62 11.87 55.55 0.66 -21.96 16 20 Si 0.91 19.63 29.56 -169.99 -5.02 14.60 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 24 C 0.12 2.36 6.58 -3.59 -0.02 2.34 16 25 C 0.06 0.95 4.79 -3.69 -0.02 0.94 16 26 N -0.49 -7.03 9.44 -10.50 -0.10 -7.13 16 27 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.16 1.17 7.73 -52.49 -0.41 0.76 16 31 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.42 7.51 -51.93 -0.39 1.03 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 1.95 5.39 -51.93 -0.28 1.67 16 36 H 0.27 7.20 8.29 -40.82 -0.34 6.87 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.99 7.10 -51.93 -0.37 1.62 16 39 H 0.09 1.33 7.62 -51.93 -0.40 0.94 16 40 H 0.06 1.00 8.13 -51.93 -0.42 0.57 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -35.65 342.95 -8.77 -44.43 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.66 Total: 1.13 kcal Atomic # 6 Polarization: 25.47 SS G_CDS: -2.70 Total: 22.77 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.90 Total: -59.30 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.66 Total: -28.80 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.65 -8.77 -44.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548519740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.286 kcal (2) G-P(sol) polarization free energy of solvation -35.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds