Wall clock time and date at job start Fri Apr 10 2020 14:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34642 * 116.99711 * 2 1 4 4 O 1.21386 * 119.99982 * 0.02562 * 3 2 1 5 5 C 1.48385 * 119.99989 * 179.97438 * 3 2 1 6 6 C 1.39538 * 120.50702 * 180.02562 * 5 3 2 7 7 C 1.38787 * 118.41660 * 179.97438 * 6 5 3 8 8 N 1.32137 * 119.24914 * 359.97438 * 7 6 5 9 9 C 1.32570 * 120.96471 * 0.02562 * 8 7 6 10 10 N 1.38428 * 119.13721 * 179.97438 * 9 8 7 11 11 C 1.46900 * 110.99986 * 124.29971 * 10 9 8 12 12 C 1.53241 * 109.33887 * 172.75121 * 11 10 9 13 13 N 1.47078 * 108.52382 * 53.83396 * 12 11 10 14 14 C 1.34768 * 120.88175 * 128.79189 * 13 12 11 15 15 O 1.21697 * 119.99928 * 174.71121 * 14 13 12 16 16 C 1.46370 * 120.00494 * 354.70902 * 14 13 12 17 17 H 1.08002 * 119.99780 * 351.25566 * 16 14 13 18 18 C 1.40047 * 120.00712 * 171.25129 * 16 14 13 19 19 N 1.30672 * 119.99400 * 358.53793 * 18 16 14 20 20 Si 1.86787 * 120.00598 * 178.53756 * 18 16 14 21 21 H 1.48503 * 109.47404 * 85.02904 * 20 18 16 22 22 H 1.48499 * 109.47419 * 205.03164 * 20 18 16 23 23 H 1.48498 * 109.47228 * 325.03205 * 20 18 16 24 24 C 1.47084 * 118.23426 * 308.81527 * 13 12 11 25 25 C 1.46901 * 110.99455 * 0.02562 * 10 9 8 26 26 N 1.32281 * 121.72760 * 359.97438 * 9 8 7 27 27 H 1.09001 * 109.46570 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46937 * 299.99907 * 1 2 3 29 29 H 1.08997 * 109.47159 * 59.99767 * 1 2 3 30 30 H 1.07991 * 120.79268 * 0.24826 * 6 5 3 31 31 H 1.07998 * 120.37632 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.49416 * 292.71387 * 11 10 9 33 33 H 1.09005 * 109.49019 * 52.79225 * 11 10 9 34 34 H 1.08995 * 109.62749 * 294.11637 * 12 11 10 35 35 H 1.09005 * 109.62680 * 173.53992 * 12 11 10 36 36 H 0.97002 * 119.99892 * 179.97438 * 19 18 16 37 37 H 1.09001 * 109.62751 * 291.47265 * 24 13 12 38 38 H 1.08992 * 109.62706 * 170.89692 * 24 13 12 39 39 H 1.08994 * 109.49450 * 307.20637 * 25 10 9 40 40 H 1.09005 * 109.49350 * 67.29543 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4021 2.2177 0.0005 5 6 3.5450 1.2774 0.0006 6 6 4.1895 2.5151 0.0011 7 6 5.5771 2.5372 0.0022 8 7 6.2410 1.3947 0.0032 9 6 5.6009 0.2338 0.0026 10 7 6.3342 -0.9402 0.0032 11 6 5.9568 -1.7962 1.1358 12 6 6.6540 -3.1540 1.0002 13 7 8.0989 -2.9243 0.8488 14 6 8.9874 -3.5695 1.6302 15 8 10.1807 -3.4414 1.4283 16 6 8.5174 -4.4241 2.7216 17 1 7.4718 -4.4287 2.9918 18 6 9.4235 -5.2358 3.4154 19 7 10.6836 -5.2518 3.0698 20 14 8.8309 -6.2957 4.8347 21 1 8.3043 -7.5801 4.3073 22 1 9.9629 -6.5662 5.7569 23 1 7.7541 -5.5834 5.5685 24 6 8.5481 -1.9714 -0.1775 25 6 7.7763 -0.6601 0.0049 26 7 4.2797 0.1680 0.0016 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 3.6219 3.4339 0.0051 31 1 6.1084 3.4775 0.0031 32 1 6.2627 -1.3216 2.0682 33 1 4.8763 -1.9407 1.1382 34 1 6.2722 -3.6757 0.1226 35 1 6.4698 -3.7510 1.8935 36 1 11.3113 -5.8137 3.5506 37 1 8.3485 -2.3794 -1.1684 38 1 9.6162 -1.7866 -0.0631 39 1 8.0158 0.0194 -0.8130 40 1 8.0566 -0.2016 0.9533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548519740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:10 Heat of formation + Delta-G solvation = -52.582528 kcal Electronic energy + Delta-G solvation = -26546.840839 eV Core-core repulsion = 22555.530142 eV Total energy + Delta-G solvation = -3991.310697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.64729 -41.41524 -40.30568 -38.44528 -37.70416 -35.44928 -35.17570 -34.62151 -32.44649 -32.10443 -29.18480 -28.95928 -27.60991 -26.71991 -24.77490 -24.32499 -22.99174 -22.29359 -20.72784 -19.71031 -19.17713 -18.45198 -17.93800 -17.84645 -17.64727 -17.07568 -16.60375 -16.53683 -16.21120 -15.88901 -15.77153 -15.62833 -15.12603 -14.92278 -14.65236 -14.41654 -14.30296 -13.51461 -13.42373 -13.11535 -13.08287 -12.83416 -12.71604 -12.47687 -12.27245 -12.22048 -12.10708 -12.06608 -12.01605 -11.94605 -11.88466 -11.42392 -10.91498 -10.49223 -9.80275 -9.65167 -9.14310 -8.29268 -6.83013 -0.81648 -0.18361 1.17162 1.31566 1.42013 1.43584 1.57772 1.89447 2.25099 2.46352 2.54248 2.79164 2.88868 3.25878 3.52087 3.57866 3.71867 3.91953 3.97585 4.10066 4.13985 4.24369 4.28820 4.31837 4.32956 4.48212 4.59566 4.70964 4.74025 4.77971 4.89151 5.00942 5.06056 5.09322 5.36023 5.41274 5.46607 5.72038 5.97818 6.11210 6.36170 6.40413 6.86924 6.88928 7.38854 8.45429 8.67218 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.003055 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.655732 B = 9164.273158 C =10264.951202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.344 6.344 3 C 0.530 3.470 4 O -0.502 6.502 5 C 0.148 3.852 6 C -0.185 4.185 7 C 0.187 3.813 8 N -0.546 5.546 9 C 0.485 3.515 10 N -0.461 5.461 11 C 0.065 3.935 12 C 0.127 3.873 13 N -0.649 5.649 14 C 0.545 3.455 15 O -0.630 6.630 16 C -0.569 4.569 17 H 0.096 0.904 18 C 0.030 3.970 19 N -0.824 5.824 20 Si 0.995 3.005 21 H -0.258 1.258 22 H -0.277 1.277 23 H -0.249 1.249 24 C 0.122 3.878 25 C 0.079 3.921 26 N -0.505 5.505 27 H 0.130 0.870 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.189 0.811 31 H 0.226 0.774 32 H 0.038 0.962 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.274 0.726 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.794 14.127 -4.741 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.372 3.628 4 O -0.389 6.389 5 C 0.001 3.999 6 C -0.209 4.209 7 C 0.019 3.981 8 N -0.266 5.266 9 C 0.128 3.872 10 N -0.181 5.181 11 C -0.061 4.061 12 C 0.003 3.997 13 N -0.386 5.386 14 C 0.351 3.649 15 O -0.517 6.517 16 C -0.605 4.605 17 H 0.114 0.886 18 C -0.185 4.185 19 N -0.454 5.454 20 Si 0.814 3.186 21 H -0.182 1.182 22 H -0.202 1.202 23 H -0.172 1.172 24 C -0.002 4.002 25 C -0.049 4.049 26 N -0.227 5.227 27 H 0.149 0.851 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.206 0.794 31 H 0.243 0.757 32 H 0.056 0.944 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -18.817 13.203 -5.256 23.580 hybrid contribution -0.291 0.557 0.874 1.077 sum -19.108 13.760 -4.381 23.951 Atomic orbital electron populations 1.23722 0.73531 1.06180 1.03238 1.86691 1.25682 1.31002 1.82488 1.20698 0.87393 0.82132 0.72610 1.90840 1.65729 1.36439 1.45875 1.20510 0.91331 0.90328 0.97726 1.23081 0.97103 0.99149 1.01563 1.24035 0.90730 0.97035 0.86339 1.68436 1.42284 0.99195 1.16661 1.21029 0.86282 0.89012 0.90836 1.58385 1.06588 1.10875 1.42224 1.22596 1.02100 0.92985 0.88444 1.21688 0.79641 0.95063 1.03266 1.48199 1.06645 1.46016 1.37756 1.18647 0.84433 0.79650 0.82152 1.90544 1.18345 1.68082 1.74772 1.21460 0.96756 1.25627 1.16626 0.88642 1.26968 0.94100 0.97265 1.00170 1.70169 1.04686 1.32808 1.37693 0.85071 0.78704 0.78288 0.76527 1.18231 1.20164 1.17229 1.21380 0.98543 0.88489 0.91770 1.22283 0.83054 0.96972 1.02541 1.67886 1.06363 1.32394 1.16036 0.85137 0.91037 0.91019 0.79394 0.75746 0.94382 0.86873 0.91227 0.88139 0.91586 0.91812 0.91293 0.87390 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.34 -7.26 10.42 -55.51 -0.58 -7.84 16 3 C 0.53 11.72 7.97 70.53 0.56 12.29 16 4 O -0.50 -11.53 16.21 20.20 0.33 -11.20 16 5 C 0.15 3.35 6.79 41.98 0.29 3.64 16 6 C -0.19 -2.97 9.71 22.72 0.22 -2.75 16 7 C 0.19 2.94 11.30 84.78 0.96 3.90 16 8 N -0.55 -13.38 8.64 -198.02 -1.71 -15.09 16 9 C 0.48 13.85 7.17 261.54 1.88 15.72 16 10 N -0.46 -14.50 4.69 -707.94 -3.32 -17.82 16 11 C 0.07 2.07 5.49 86.38 0.47 2.55 16 12 C 0.13 4.63 6.52 86.35 0.56 5.20 16 13 N -0.65 -29.74 3.01 -823.00 -2.48 -32.22 16 14 C 0.54 31.50 7.61 86.36 0.66 32.15 16 15 O -0.63 -42.19 14.57 -4.34 -0.06 -42.26 16 16 C -0.57 -31.51 8.84 24.83 0.22 -31.29 16 17 H 0.10 4.67 5.75 -2.91 -0.02 4.65 16 18 C 0.03 1.65 5.50 85.30 0.47 2.12 16 19 N -0.82 -50.17 11.87 21.84 0.26 -49.91 16 20 Si 0.99 40.24 29.56 68.60 2.03 42.26 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 24 C 0.12 4.87 6.58 86.35 0.57 5.44 16 25 C 0.08 2.60 4.79 86.39 0.41 3.02 16 26 N -0.51 -13.87 9.44 -187.14 -1.77 -15.63 16 27 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.19 1.94 7.73 -2.92 -0.02 1.91 16 31 H 0.23 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 3.20 7.51 -2.38 -0.02 3.19 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.10 3.71 5.39 -2.38 -0.01 3.70 16 36 H 0.27 15.15 8.29 -92.71 -0.77 14.39 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.07 3.09 7.10 -2.39 -0.02 3.07 16 39 H 0.11 3.13 7.62 -2.39 -0.02 3.12 16 40 H 0.04 1.47 8.13 -2.38 -0.02 1.45 16 Total: -1.00 -81.19 342.95 2.25 -78.93 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 1.09 Total: 17.27 kcal Atomic # 6 Polarization: 45.03 SS G_CDS: 8.46 Total: 53.50 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -9.01 Total: -130.67 kcal Atomic # 8 Polarization: -60.98 SS G_CDS: -0.31 Total: -61.30 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Total: -81.19 2.25 -78.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548519740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.351 kcal (2) G-P(sol) polarization free energy of solvation -81.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds