Wall clock time and date at job start Fri Apr 10 2020 14:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47389 * 2 1 4 4 C 1.50710 * 109.46834 * 119.99673 * 2 1 3 5 5 H 1.08007 * 119.99473 * 119.72406 * 4 2 1 6 6 C 1.37874 * 119.99989 * 299.99972 * 4 2 1 7 7 N 1.31518 * 120.00091 * 359.72071 * 6 4 2 8 8 Si 1.86803 * 119.99714 * 179.72750 * 6 4 2 9 9 H 1.48500 * 109.47256 * 89.99808 * 8 6 4 10 10 H 1.48504 * 109.46787 * 209.99706 * 8 6 4 11 11 H 1.48499 * 109.47143 * 329.99686 * 8 6 4 12 12 N 1.46896 * 109.46841 * 239.99284 * 2 1 3 13 13 C 1.46899 * 110.99779 * 184.30204 * 12 2 1 14 14 C 1.53244 * 109.34112 * 172.75042 * 13 12 2 15 15 N 1.47076 * 108.51885 * 53.82900 * 14 13 12 16 16 C 1.34775 * 120.87929 * 128.79761 * 15 14 13 17 17 O 1.21787 * 120.00122 * 175.07491 * 16 15 14 18 18 C 1.41480 * 119.99991 * 355.07203 * 16 15 14 19 19 C 1.35658 * 119.99724 * 185.39672 * 18 16 15 20 20 C 1.41580 * 119.99450 * 180.02562 * 19 18 16 21 21 C 1.37049 * 125.47102 * 179.71456 * 20 19 18 22 22 C 1.37436 * 113.21790 * 179.83772 * 21 20 19 23 23 C 1.33854 * 115.13087 * 0.45700 * 22 21 20 24 24 S 1.70610 * 111.01594 * 359.74788 * 23 22 21 25 25 C 1.47079 * 118.24189 * 308.81947 * 15 14 13 26 26 C 1.46900 * 110.99750 * 60.00609 * 12 2 1 27 27 H 1.08995 * 109.46980 * 60.00476 * 1 2 3 28 28 H 1.08996 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46956 * 299.99997 * 1 2 3 30 30 H 0.96993 * 119.99901 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.49781 * 292.70988 * 13 12 2 32 32 H 1.09000 * 109.49710 * 52.79138 * 13 12 2 33 33 H 1.09000 * 109.62796 * 294.11970 * 14 13 12 34 34 H 1.08999 * 109.62895 * 173.54299 * 14 13 12 35 35 H 1.07998 * 119.99867 * 5.39993 * 18 16 15 36 36 H 1.08000 * 119.99988 * 359.97438 * 19 18 16 37 37 H 1.07993 * 123.39118 * 0.02562 * 21 20 19 38 38 H 1.08007 * 122.43531 * 180.18200 * 22 21 20 39 39 H 1.07997 * 124.49477 * 179.72593 * 23 22 21 40 40 H 1.09011 * 109.62441 * 291.47484 * 25 15 14 41 41 H 1.08995 * 109.62926 * 170.89767 * 25 15 14 42 42 H 1.09002 * 109.49166 * 307.20829 * 26 12 2 43 43 H 1.08999 * 109.49458 * 67.26652 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6496 -1.5912 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3156 -1.1243 4.0081 9 1 3.6256 -0.5555 4.4150 10 1 1.3363 -0.9503 5.1109 11 1 2.4747 -2.5705 3.7109 12 7 2.0196 -0.6926 -1.1993 13 6 3.4844 -0.8020 -1.1829 14 6 3.9407 -1.6831 -2.3508 15 7 3.3713 -1.1422 -3.5943 16 6 4.1537 -0.8967 -4.6639 17 8 3.6539 -0.5342 -5.7136 18 6 5.5557 -1.0601 -4.5672 19 6 6.3528 -0.7090 -5.6073 20 6 7.7557 -0.8731 -5.5107 21 6 8.6621 -0.5622 -6.4905 22 6 9.9623 -0.8198 -6.1273 23 6 10.1190 -1.3319 -4.9006 24 16 8.6145 -1.5155 -4.1174 25 6 1.9256 -0.8758 -3.6396 26 6 1.5487 -0.0265 -2.4210 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7130 1.1645 3.4843 31 1 3.9245 0.1903 -1.2825 32 1 3.8053 -1.2499 -0.2425 33 1 3.5875 -2.7031 -2.1997 34 1 5.0289 -1.6748 -2.4123 35 1 5.9913 -1.4644 -3.6655 36 1 5.9170 -0.3052 -6.5092 37 1 8.3830 -0.1530 -7.4502 38 1 10.7967 -0.6275 -6.7857 39 1 11.0716 -1.5944 -4.4645 40 1 1.3786 -1.8183 -3.6123 41 1 1.6815 -0.3339 -4.5533 42 1 0.4655 0.0879 -2.3784 43 1 2.0153 0.9551 -2.5030 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053609536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:30 Heat of formation + Delta-G solvation = 36.088692 kcal Electronic energy + Delta-G solvation = -24145.307924 eV Core-core repulsion = 20704.135514 eV Total energy + Delta-G solvation = -3441.172410 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.13289 -38.34378 -37.70290 -34.86868 -34.24705 -32.55683 -30.94616 -29.73808 -28.85020 -26.21196 -25.58613 -24.87635 -23.11851 -22.29016 -20.87898 -20.02043 -19.67119 -18.37964 -17.67454 -16.86796 -16.35415 -15.91797 -15.53785 -15.17828 -14.92626 -14.24335 -14.02873 -13.86197 -13.69525 -13.59707 -13.43903 -13.07839 -12.97646 -12.65875 -12.39815 -12.20229 -11.78104 -11.75663 -11.10574 -11.07207 -10.97613 -10.82679 -10.72167 -10.67033 -10.63650 -10.19823 -10.08321 -9.90374 -9.64550 -8.92103 -8.89653 -8.53465 -8.46905 -8.19553 -7.26082 -6.06211 -4.11552 -0.07195 1.25144 1.57206 1.67911 2.52158 3.23654 3.26588 3.34020 3.37026 3.48161 4.35637 4.54565 4.69578 4.72091 4.92999 4.99542 5.09256 5.21801 5.25447 5.38932 5.45627 5.54580 5.56891 5.70533 5.80577 5.84257 5.91163 5.94358 6.08124 6.12946 6.19513 6.33070 6.48708 6.52437 6.72891 6.82764 7.01116 7.08988 7.44654 7.62050 7.65487 7.76679 8.12468 8.25750 8.31440 8.51686 8.94280 9.53863 11.00605 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.002955 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.955002 B = 9472.884007 C =10963.927720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.213 3.787 3 H -0.002 1.002 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.532 5.532 13 C 0.048 3.952 14 C 0.106 3.894 15 N -0.602 5.602 16 C 0.550 3.450 17 O -0.560 6.560 18 C -0.217 4.217 19 C 0.013 3.987 20 C -0.195 4.195 21 C -0.103 4.103 22 C -0.145 4.145 23 C -0.248 4.248 24 S 0.202 5.798 25 C 0.119 3.881 26 C 0.037 3.963 27 H 0.009 0.991 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.261 0.739 31 H 0.025 0.975 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.157 -4.261 -14.694 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.258 5.258 13 C -0.081 4.081 14 C -0.017 4.017 15 N -0.334 5.334 16 C 0.342 3.658 17 O -0.442 6.442 18 C -0.240 4.240 19 C -0.008 4.008 20 C -0.312 4.312 21 C -0.135 4.135 22 C -0.176 4.176 23 C -0.385 4.385 24 S 0.470 5.530 25 C -0.004 4.004 26 C -0.092 4.092 27 H 0.028 0.972 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.158 0.842 39 H 0.183 0.817 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 14.208 -4.981 -13.618 20.301 hybrid contribution 1.258 0.945 -0.338 1.609 sum 15.466 -4.036 -13.956 21.219 Atomic orbital electron populations 1.21845 0.97588 0.99726 0.99951 1.19236 0.92407 0.91987 0.85632 0.98419 1.21127 1.31443 1.12196 0.89733 0.91797 1.24937 0.95120 0.95050 0.99061 1.69891 1.36840 1.22837 1.23511 0.86528 0.78450 0.80086 0.82530 1.20776 1.21263 1.19787 1.62091 1.08316 1.52869 1.02482 1.22357 0.89945 0.97709 0.98050 1.22120 0.97779 0.98534 0.83230 1.48150 1.09024 1.63008 1.13226 1.16874 0.87281 0.78118 0.83513 1.90794 1.76283 1.48882 1.28263 1.22188 0.94387 1.07126 1.00312 1.20697 0.89133 0.92431 0.98558 1.22718 0.97505 1.11644 0.99377 1.20966 0.91854 1.00897 0.99774 1.19995 0.97713 1.03133 0.96710 1.25311 1.03907 1.08822 1.00490 1.83271 0.95518 1.58112 1.16082 1.21754 0.79404 1.00352 0.98866 1.22479 1.01286 0.94821 0.90628 0.97227 0.94568 0.89645 0.92917 0.95708 0.88079 0.90522 0.90206 0.85487 0.83679 0.83429 0.84218 0.81737 0.91004 0.89495 0.89505 0.95701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.75 37.16 0.33 -2.84 16 2 C 0.21 5.20 2.07 -68.86 -0.14 5.06 16 3 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 4 C -0.51 -13.24 7.83 -34.44 -0.27 -13.51 16 5 H 0.06 1.64 6.41 -52.48 -0.34 1.30 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.87 11.33 55.43 0.63 -24.24 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.53 -10.94 4.49 -227.73 -1.02 -11.96 16 13 C 0.05 0.89 5.38 -3.70 -0.02 0.87 16 14 C 0.11 1.55 6.50 -3.60 -0.02 1.53 16 15 N -0.60 -9.51 3.01 -175.91 -0.53 -10.04 16 16 C 0.55 8.69 7.46 -15.03 -0.11 8.57 16 17 O -0.56 -10.30 15.60 5.11 0.08 -10.22 16 18 C -0.22 -2.75 8.70 -39.27 -0.34 -3.10 16 19 C 0.01 0.15 9.36 -39.23 -0.37 -0.21 16 20 C -0.19 -1.94 6.21 -38.74 -0.24 -2.18 16 21 C -0.10 -0.88 10.25 -40.31 -0.41 -1.29 16 22 C -0.14 -1.10 10.14 -41.41 -0.42 -1.52 16 23 C -0.25 -1.88 10.92 29.19 0.32 -1.56 16 24 S 0.20 1.76 21.77 -107.50 -2.34 -0.58 16 25 C 0.12 1.92 6.58 -3.60 -0.02 1.90 16 26 C 0.04 0.68 5.40 -3.70 -0.02 0.66 16 27 H 0.01 0.19 6.25 -51.93 -0.32 -0.13 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 2.24 6.08 -51.93 -0.32 1.92 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 1.94 5.99 -51.93 -0.31 1.63 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 0.95 5.36 -51.93 -0.28 0.67 16 35 H 0.13 1.41 4.76 -52.49 -0.25 1.16 16 36 H 0.15 1.66 7.47 -52.49 -0.39 1.26 16 37 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 41 H 0.09 1.40 7.09 -51.93 -0.37 1.03 16 42 H 0.09 1.56 5.95 -51.93 -0.31 1.25 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -30.25 354.59 -10.53 -40.78 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.83 Total: 1.48 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.84 Total: -6.13 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.92 Total: -46.25 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.34 Total: -0.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.25 -10.53 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053609536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.869 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds