Wall clock time and date at job start Fri Apr 10 2020 14:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47389 * 2 1 4 4 C 1.50710 * 109.46834 * 119.99673 * 2 1 3 5 5 H 1.08007 * 119.99473 * 119.72406 * 4 2 1 6 6 C 1.37874 * 119.99989 * 299.99972 * 4 2 1 7 7 N 1.31518 * 120.00091 * 359.72071 * 6 4 2 8 8 Si 1.86803 * 119.99714 * 179.72750 * 6 4 2 9 9 H 1.48500 * 109.47256 * 89.99808 * 8 6 4 10 10 H 1.48504 * 109.46787 * 209.99706 * 8 6 4 11 11 H 1.48499 * 109.47143 * 329.99686 * 8 6 4 12 12 N 1.46896 * 109.46841 * 239.99284 * 2 1 3 13 13 C 1.46899 * 110.99779 * 184.30204 * 12 2 1 14 14 C 1.53244 * 109.34112 * 172.75042 * 13 12 2 15 15 N 1.47076 * 108.51885 * 53.82900 * 14 13 12 16 16 C 1.34775 * 120.87929 * 128.79761 * 15 14 13 17 17 O 1.21787 * 120.00122 * 175.07491 * 16 15 14 18 18 C 1.41480 * 119.99991 * 355.07203 * 16 15 14 19 19 C 1.35658 * 119.99724 * 185.39672 * 18 16 15 20 20 C 1.41580 * 119.99450 * 180.02562 * 19 18 16 21 21 C 1.37049 * 125.47102 * 179.71456 * 20 19 18 22 22 C 1.37436 * 113.21790 * 179.83772 * 21 20 19 23 23 C 1.33854 * 115.13087 * 0.45700 * 22 21 20 24 24 S 1.70610 * 111.01594 * 359.74788 * 23 22 21 25 25 C 1.47079 * 118.24189 * 308.81947 * 15 14 13 26 26 C 1.46900 * 110.99750 * 60.00609 * 12 2 1 27 27 H 1.08995 * 109.46980 * 60.00476 * 1 2 3 28 28 H 1.08996 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46956 * 299.99997 * 1 2 3 30 30 H 0.96993 * 119.99901 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.49781 * 292.70988 * 13 12 2 32 32 H 1.09000 * 109.49710 * 52.79138 * 13 12 2 33 33 H 1.09000 * 109.62796 * 294.11970 * 14 13 12 34 34 H 1.08999 * 109.62895 * 173.54299 * 14 13 12 35 35 H 1.07998 * 119.99867 * 5.39993 * 18 16 15 36 36 H 1.08000 * 119.99988 * 359.97438 * 19 18 16 37 37 H 1.07993 * 123.39118 * 0.02562 * 21 20 19 38 38 H 1.08007 * 122.43531 * 180.18200 * 22 21 20 39 39 H 1.07997 * 124.49477 * 179.72593 * 23 22 21 40 40 H 1.09011 * 109.62441 * 291.47484 * 25 15 14 41 41 H 1.08995 * 109.62926 * 170.89767 * 25 15 14 42 42 H 1.09002 * 109.49166 * 307.20829 * 26 12 2 43 43 H 1.08999 * 109.49458 * 67.26652 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6496 -1.5912 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3156 -1.1243 4.0081 9 1 3.6256 -0.5555 4.4150 10 1 1.3363 -0.9503 5.1109 11 1 2.4747 -2.5705 3.7109 12 7 2.0196 -0.6926 -1.1993 13 6 3.4844 -0.8020 -1.1829 14 6 3.9407 -1.6831 -2.3508 15 7 3.3713 -1.1422 -3.5943 16 6 4.1537 -0.8967 -4.6639 17 8 3.6539 -0.5342 -5.7136 18 6 5.5557 -1.0601 -4.5672 19 6 6.3528 -0.7090 -5.6073 20 6 7.7557 -0.8731 -5.5107 21 6 8.6621 -0.5622 -6.4905 22 6 9.9623 -0.8198 -6.1273 23 6 10.1190 -1.3319 -4.9006 24 16 8.6145 -1.5155 -4.1174 25 6 1.9256 -0.8758 -3.6396 26 6 1.5487 -0.0265 -2.4210 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7130 1.1645 3.4843 31 1 3.9245 0.1903 -1.2825 32 1 3.8053 -1.2499 -0.2425 33 1 3.5875 -2.7031 -2.1997 34 1 5.0289 -1.6748 -2.4123 35 1 5.9913 -1.4644 -3.6655 36 1 5.9170 -0.3052 -6.5092 37 1 8.3830 -0.1530 -7.4502 38 1 10.7967 -0.6275 -6.7857 39 1 11.0716 -1.5944 -4.4645 40 1 1.3786 -1.8183 -3.6123 41 1 1.6815 -0.3339 -4.5533 42 1 0.4655 0.0879 -2.3784 43 1 2.0153 0.9551 -2.5030 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053609536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:29 Heat of formation + Delta-G solvation = 18.443858 kcal Electronic energy + Delta-G solvation = -24146.073061 eV Core-core repulsion = 20704.135514 eV Total energy + Delta-G solvation = -3441.937547 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.38030 -39.36906 -38.84193 -36.44479 -35.15063 -34.38052 -32.30153 -31.36393 -29.85335 -27.58832 -27.39030 -25.91548 -24.40371 -23.45901 -22.34605 -21.23962 -20.72376 -19.58747 -18.63798 -18.36269 -17.78599 -17.07083 -16.73647 -16.40446 -16.29728 -15.79647 -15.66384 -15.22192 -14.95634 -14.80578 -14.36335 -14.25388 -14.01305 -13.62294 -13.60019 -13.42474 -13.26914 -12.92419 -12.84584 -12.63639 -12.44388 -12.41885 -12.28396 -12.04334 -11.89783 -11.69696 -11.64009 -11.47932 -10.95272 -10.81429 -10.50333 -9.78127 -9.53320 -9.08365 -8.94807 -8.09876 -6.22040 -0.85313 0.59527 0.77381 1.05223 1.44992 1.46736 1.56831 1.80536 2.03523 2.40074 2.44447 3.17133 3.27222 3.60957 3.88462 4.01769 4.07597 4.18591 4.20057 4.27477 4.36160 4.38842 4.46318 4.58702 4.61020 4.72244 4.81659 4.88489 4.92350 4.95979 5.03045 5.09444 5.12783 5.18944 5.21760 5.34651 5.48682 5.50011 5.52666 5.72437 5.78257 6.25076 6.30750 6.45078 6.67658 6.92170 7.11189 7.47475 8.96542 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.002955 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.955002 B = 9472.884007 C =10963.927720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.217 3.783 3 H -0.043 1.043 4 C -0.517 4.517 5 H 0.068 0.932 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.534 5.534 13 C 0.049 3.951 14 C 0.117 3.883 15 N -0.609 5.609 16 C 0.551 3.449 17 O -0.595 6.595 18 C -0.249 4.249 19 C 0.043 3.957 20 C -0.234 4.234 21 C -0.088 4.088 22 C -0.156 4.156 23 C -0.236 4.236 24 S 0.197 5.803 25 C 0.127 3.873 26 C 0.042 3.958 27 H 0.029 0.971 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.261 0.739 31 H 0.010 0.990 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.189 0.811 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.751 -5.687 -15.486 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.111 3.889 3 H -0.025 1.025 4 C -0.555 4.555 5 H 0.086 0.914 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.259 5.259 13 C -0.080 4.080 14 C -0.005 4.005 15 N -0.340 5.340 16 C 0.345 3.655 17 O -0.479 6.479 18 C -0.271 4.271 19 C 0.021 3.979 20 C -0.351 4.351 21 C -0.120 4.120 22 C -0.187 4.187 23 C -0.373 4.373 24 S 0.466 5.534 25 C 0.004 3.996 26 C -0.087 4.087 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.182 0.818 39 H 0.206 0.794 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 16.811 -6.426 -14.413 23.057 hybrid contribution 0.643 1.444 -0.217 1.595 sum 17.454 -4.982 -14.629 23.313 Atomic orbital electron populations 1.21670 0.97233 0.99487 0.99669 1.19035 0.92717 0.90002 0.87173 1.02505 1.21430 1.31311 1.12240 0.90546 0.91421 1.25744 0.95318 0.95731 1.02063 1.70036 1.37992 1.24229 1.24039 0.85503 0.77836 0.79285 0.78697 1.20202 1.21379 1.18820 1.62060 1.09859 1.52091 1.01884 1.22383 0.88427 0.97719 0.99469 1.22096 0.99557 0.97731 0.81110 1.48210 1.08799 1.63299 1.13702 1.17283 0.88340 0.77051 0.82801 1.90766 1.77055 1.50699 1.29429 1.21997 0.92658 1.10628 1.01841 1.20753 0.89941 0.89618 0.97579 1.22718 0.97031 1.14477 1.00853 1.21344 0.92088 0.98699 0.99920 1.20304 0.98033 1.03124 0.97201 1.25723 1.04289 1.07029 1.00259 1.83298 0.96236 1.57951 1.15901 1.21615 0.80229 1.00301 0.97467 1.22478 1.01212 0.94442 0.90589 0.95209 0.94560 0.92237 0.93028 0.97149 0.89005 0.89497 0.87149 0.84113 0.84182 0.81794 0.81757 0.79362 0.90012 0.89436 0.89321 0.97232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.75 71.98 0.63 -5.31 16 2 C 0.22 10.91 2.07 44.17 0.09 11.00 16 3 H -0.04 -2.44 8.14 -2.39 -0.02 -2.46 16 4 C -0.52 -27.36 7.83 25.60 0.20 -27.16 16 5 H 0.07 3.46 6.41 -2.91 -0.02 3.44 16 6 C 0.01 0.54 5.30 84.65 0.45 0.98 16 7 N -0.92 -52.66 11.33 21.45 0.24 -52.42 16 8 Si 0.96 42.32 29.54 68.60 2.03 44.35 16 9 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 12 N -0.53 -22.19 4.49 -874.39 -3.93 -26.12 16 13 C 0.05 1.79 5.38 86.39 0.46 2.26 16 14 C 0.12 3.29 6.50 86.35 0.56 3.85 16 15 N -0.61 -18.87 3.01 -828.64 -2.49 -21.37 16 16 C 0.55 17.20 7.46 85.04 0.63 17.83 16 17 O -0.59 -21.97 15.60 -4.63 -0.07 -22.04 16 18 C -0.25 -6.09 8.70 22.47 0.20 -5.90 16 19 C 0.04 0.93 9.36 22.50 0.21 1.14 16 20 C -0.23 -4.21 6.21 22.81 0.14 -4.07 16 21 C -0.09 -1.26 10.25 21.80 0.22 -1.04 16 22 C -0.16 -1.84 10.14 21.08 0.21 -1.62 16 23 C -0.24 -2.79 10.92 66.82 0.73 -2.06 16 24 S 0.20 3.01 21.77 -56.49 -1.23 1.78 16 25 C 0.13 4.07 6.58 86.35 0.57 4.63 16 26 C 0.04 1.54 5.40 86.38 0.47 2.01 16 27 H 0.03 1.27 6.25 -2.39 -0.01 1.26 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 3.20 6.08 -2.39 -0.01 3.19 16 30 H 0.26 14.19 8.31 -92.71 -0.77 13.41 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.09 3.52 5.99 -2.39 -0.01 3.51 16 33 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.11 2.43 5.36 -2.39 -0.01 2.42 16 35 H 0.14 2.92 4.76 -2.91 -0.01 2.91 16 36 H 0.14 3.12 7.47 -2.91 -0.02 3.10 16 37 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 38 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 41 H 0.09 2.82 7.09 -2.39 -0.02 2.80 16 42 H 0.09 3.20 5.95 -2.39 -0.01 3.18 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -66.19 354.59 1.35 -64.84 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.02 Total: 14.41 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.78 Total: -3.44 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -6.18 Total: -99.90 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.07 Total: -22.04 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.23 Total: 1.78 kcal Total: -66.19 1.35 -64.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053609536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.284 kcal (2) G-P(sol) polarization free energy of solvation -66.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds