Wall clock time and date at job start Fri Apr 10 2020 14:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47031 * 2 1 4 4 C 1.50698 * 109.47141 * 120.00468 * 2 1 3 5 5 H 1.07997 * 119.99968 * 120.00193 * 4 2 1 6 6 C 1.37879 * 120.00077 * 299.99543 * 4 2 1 7 7 N 1.31515 * 119.99687 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00185 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46941 * 90.00345 * 8 6 4 10 10 H 1.48499 * 109.46842 * 210.00209 * 8 6 4 11 11 H 1.48498 * 109.47230 * 330.00255 * 8 6 4 12 12 N 1.46906 * 109.47085 * 240.00305 * 2 1 3 13 13 C 1.46898 * 110.99768 * 59.99789 * 12 2 1 14 14 C 1.53241 * 109.33987 * 187.25168 * 13 12 2 15 15 N 1.47078 * 108.52501 * 306.17451 * 14 13 12 16 16 C 1.34774 * 120.88374 * 231.18739 * 15 14 13 17 17 O 1.21787 * 119.99847 * 355.10442 * 16 15 14 18 18 C 1.41474 * 119.99900 * 175.10682 * 16 15 14 19 19 C 1.35654 * 119.99550 * 200.80633 * 18 16 15 20 20 C 1.41591 * 120.00237 * 28.07325 * 19 18 16 21 21 C 1.37033 * 125.47547 * 188.62000 * 20 19 18 22 22 C 1.37441 * 113.22400 * 179.97438 * 21 20 19 23 23 C 1.33854 * 115.12315 * 359.97438 * 22 21 20 24 24 S 1.70608 * 111.01850 * 0.02562 * 23 22 21 25 25 C 1.47085 * 118.23430 * 51.44972 * 15 14 13 26 26 C 1.46896 * 110.99919 * 184.29969 * 12 2 1 27 27 H 1.08997 * 109.47517 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47150 * 299.99572 * 1 2 3 29 29 H 1.08997 * 109.47241 * 59.99705 * 1 2 3 30 30 H 0.97000 * 119.99595 * 180.02562 * 7 6 4 31 31 H 1.09007 * 109.49284 * 67.29811 * 13 12 2 32 32 H 1.08995 * 109.52034 * 307.22593 * 13 12 2 33 33 H 1.08996 * 109.62880 * 186.45803 * 14 13 12 34 34 H 1.08998 * 109.62552 * 65.88316 * 14 13 12 35 35 H 1.07992 * 120.00645 * 20.80415 * 18 16 15 36 36 H 1.08001 * 119.99819 * 208.06657 * 19 18 16 37 37 H 1.08001 * 123.39154 * 0.02562 * 21 20 19 38 38 H 1.07997 * 122.43614 * 180.02562 * 22 21 20 39 39 H 1.08001 * 124.48900 * 180.26177 * 23 22 21 40 40 H 1.09003 * 109.62432 * 68.25754 * 25 15 14 41 41 H 1.09004 * 109.62454 * 188.83224 * 25 15 14 42 42 H 1.08998 * 109.49656 * 292.70511 * 26 12 2 43 43 H 1.09002 * 109.49213 * 52.76226 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.6305 -0.5442 4.4117 10 1 1.3445 -0.9492 5.1122 11 1 2.4881 -2.5655 3.7121 12 7 2.0197 -0.6925 -1.1995 13 6 1.5486 -0.0263 -2.4211 14 6 1.9255 -0.8754 -3.6398 15 7 3.3712 -1.1417 -3.5947 16 6 4.1536 -0.8964 -4.6643 17 8 3.6537 -0.5331 -5.7138 18 6 5.5554 -1.0610 -4.5680 19 6 6.3738 -0.4373 -5.4521 20 6 5.9695 0.7783 -6.0552 21 6 6.6227 1.4143 -7.0782 22 6 6.0088 2.5793 -7.4719 23 6 4.8938 2.8894 -6.7994 24 16 4.5480 1.7136 -5.6125 25 6 3.9397 -1.6884 -2.3531 26 6 3.4845 -0.8017 -1.1832 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.7089 1.1611 3.4845 31 1 2.0155 0.9553 -2.5033 32 1 0.4655 0.0886 -2.3787 33 1 1.6813 -0.3333 -4.5533 34 1 1.3786 -1.8178 -3.6126 35 1 5.9740 -1.6830 -3.7908 36 1 7.3338 -0.8679 -5.6957 37 1 7.5283 1.0376 -7.5304 38 1 6.3973 3.1989 -8.2665 39 1 4.2907 3.7657 -6.9862 40 1 3.5826 -2.7076 -2.2047 41 1 5.0279 -1.6842 -2.4158 42 1 3.9244 0.1905 -1.2826 43 1 3.8053 -1.2493 -0.2425 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096310147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:38 Heat of formation + Delta-G solvation = 36.319816 kcal Electronic energy + Delta-G solvation = -24880.389849 eV Core-core repulsion = 21439.227461 eV Total energy + Delta-G solvation = -3441.162388 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40412 -39.39677 -38.68112 -36.43162 -34.84590 -34.36820 -32.21062 -31.32691 -29.69673 -27.54126 -27.36438 -25.70681 -24.40992 -23.55414 -22.32608 -21.22189 -20.58429 -19.68459 -18.52379 -18.34301 -17.73126 -16.94116 -16.78065 -16.42592 -15.89015 -15.76172 -15.70100 -15.15730 -14.96821 -14.70255 -14.52765 -14.23375 -13.95386 -13.56462 -13.56056 -13.43024 -13.14263 -12.92011 -12.78491 -12.62820 -12.42476 -12.40468 -12.27356 -12.02270 -11.88216 -11.61554 -11.52616 -11.02147 -10.86921 -10.75334 -10.50040 -9.88795 -9.12685 -8.89843 -8.73306 -8.09757 -6.21834 -0.83628 0.79859 0.94542 1.26357 1.44816 1.46552 1.56538 1.84975 2.14360 2.37954 2.44298 3.17829 3.29697 3.80417 3.97120 4.07277 4.13952 4.19271 4.29314 4.31687 4.47239 4.48875 4.52256 4.62463 4.70947 4.74635 4.85624 4.89947 4.96495 4.98590 5.03395 5.14414 5.17180 5.22581 5.28761 5.43089 5.50041 5.52809 5.66263 5.72859 5.79121 6.25777 6.33605 6.51352 6.69433 6.92700 7.17431 7.47684 8.96507 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.003141 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.463075 B = 8913.535695 C = 9070.402378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.218 3.782 3 H -0.043 1.043 4 C -0.517 4.517 5 H 0.067 0.933 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.533 5.533 13 C 0.043 3.957 14 C 0.127 3.873 15 N -0.606 5.606 16 C 0.535 3.465 17 O -0.564 6.564 18 C -0.277 4.277 19 C 0.042 3.958 20 C -0.236 4.236 21 C -0.090 4.090 22 C -0.164 4.164 23 C -0.275 4.275 24 S 0.215 5.785 25 C 0.119 3.881 26 C 0.050 3.950 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.260 0.740 31 H 0.010 0.990 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.168 0.832 36 H 0.182 0.818 37 H 0.176 0.824 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.010 0.990 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.469 -1.631 -17.182 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 H -0.025 1.025 4 C -0.555 4.555 5 H 0.086 0.914 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.259 5.259 13 C -0.086 4.086 14 C 0.004 3.996 15 N -0.338 5.338 16 C 0.328 3.672 17 O -0.448 6.448 18 C -0.299 4.299 19 C 0.021 3.979 20 C -0.354 4.354 21 C -0.122 4.122 22 C -0.196 4.196 23 C -0.413 4.413 24 S 0.486 5.514 25 C -0.004 4.004 26 C -0.079 4.079 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.186 0.814 36 H 0.199 0.801 37 H 0.193 0.807 38 H 0.176 0.824 39 H 0.188 0.812 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.028 0.972 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.726 -1.928 -16.490 19.766 hybrid contribution 1.031 1.165 0.089 1.558 sum 11.757 -0.762 -16.401 20.194 Atomic orbital electron populations 1.21669 0.97328 0.99416 0.99624 1.19020 0.92636 0.89993 0.87226 1.02522 1.21430 1.31122 1.12375 0.90574 0.91450 1.25740 0.95345 0.95724 1.02049 1.70036 1.37843 1.24389 1.24004 0.85507 0.77833 0.79277 0.78733 1.20229 1.21402 1.18842 1.62052 1.09952 1.52045 1.01805 1.22453 1.00976 0.94508 0.90637 1.21561 0.80672 1.00009 0.97340 1.48306 1.08657 1.63210 1.13624 1.17663 0.88923 0.77444 0.83127 1.90808 1.76902 1.48106 1.29009 1.22237 0.92061 1.11178 1.04466 1.21066 1.00388 0.88522 0.87919 1.23007 1.02372 1.02931 1.07112 1.21290 1.01353 0.94763 0.94801 1.20248 0.96307 0.99254 1.03756 1.25983 1.03360 1.06108 1.05861 1.84133 1.23614 1.09428 1.34214 1.22157 0.99797 0.97321 0.81086 1.22448 0.88292 0.97669 0.99480 0.94645 0.92244 0.95292 0.93050 0.97162 0.89679 0.89497 0.90503 0.81433 0.80067 0.80714 0.82406 0.81177 0.89820 0.86676 0.97195 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.75 71.98 0.63 -5.29 16 2 C 0.22 10.87 2.07 44.17 0.09 10.96 16 3 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 16 4 C -0.52 -27.27 7.84 25.60 0.20 -27.07 16 5 H 0.07 3.44 6.40 -2.91 -0.02 3.42 16 6 C 0.01 0.53 5.30 84.65 0.45 0.98 16 7 N -0.92 -52.55 11.32 21.45 0.24 -52.31 16 8 Si 0.96 42.31 29.54 68.60 2.03 44.33 16 9 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 12 N -0.53 -21.86 4.49 -873.48 -3.92 -25.78 16 13 C 0.04 1.57 5.39 86.38 0.47 2.04 16 14 C 0.13 3.96 6.58 86.35 0.57 4.53 16 15 N -0.61 -17.72 3.00 -827.75 -2.49 -20.21 16 16 C 0.53 15.37 5.92 85.04 0.50 15.87 16 17 O -0.56 -19.05 12.29 -4.63 -0.06 -19.10 16 18 C -0.28 -5.97 8.89 22.47 0.20 -5.77 16 19 C 0.04 0.79 9.73 22.50 0.22 1.01 16 20 C -0.24 -5.46 5.56 22.81 0.13 -5.33 16 21 C -0.09 -1.68 10.25 21.80 0.22 -1.46 16 22 C -0.16 -3.21 10.15 21.08 0.21 -2.99 16 23 C -0.28 -6.31 10.92 66.82 0.73 -5.58 16 24 S 0.21 5.93 18.25 -56.49 -1.03 4.90 16 25 C 0.12 3.17 6.52 86.50 0.56 3.73 16 26 C 0.05 1.80 5.39 86.54 0.47 2.26 16 27 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 29 H 0.03 1.23 6.25 -2.39 -0.01 1.22 16 30 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.09 3.05 5.95 -2.39 -0.01 3.04 16 33 H 0.09 2.72 7.09 -2.39 -0.02 2.70 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.17 2.60 6.13 -2.91 -0.02 2.58 16 36 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.12 2.29 5.49 -2.38 -0.01 2.27 16 42 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.09 3.37 5.98 -2.39 -0.01 3.35 16 Total: -1.00 -66.69 348.24 1.44 -65.25 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.02 Total: 15.02 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 5.65 Total: -12.10 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -6.16 Total: -98.30 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.06 Total: -19.10 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.03 Total: 4.90 kcal Total: -66.69 1.44 -65.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096310147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.571 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds