Wall clock time and date at job start Fri Apr 10 2020 14:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40590 * 127.37790 * 2 1 4 4 N 1.28914 * 106.79115 * 180.26751 * 3 2 1 5 5 N 1.28419 * 110.30325 * 359.74586 * 4 3 2 6 6 C 1.31384 * 110.52132 * 359.97438 * 5 4 3 7 7 N 1.38861 * 126.43058 * 179.97438 * 6 5 4 8 8 C 1.34773 * 119.99755 * 0.03414 * 7 6 5 9 9 O 1.21280 * 120.00164 * 5.09636 * 8 7 6 10 10 C 1.50700 * 120.00016 * 185.09673 * 8 7 6 11 11 C 1.53210 * 119.58062 * 165.47619 * 10 8 7 12 12 C 1.53120 * 60.25981 * 249.43702 * 11 10 8 13 13 H 1.09000 * 120.25016 * 111.92462 * 12 11 10 14 14 C 1.54710 * 117.55389 * 267.94426 * 12 11 10 15 15 C 1.54959 * 102.69595 * 40.88253 * 14 12 11 16 16 N 1.47373 * 117.18083 * 321.11630 * 10 8 7 17 17 C 1.34776 * 126.94618 * 344.28718 * 16 10 8 18 18 O 1.21273 * 120.00079 * 355.04529 * 17 16 10 19 19 C 1.50701 * 120.00059 * 175.03635 * 17 16 10 20 20 C 1.50703 * 109.47296 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99851 * 0.02562 * 20 19 17 22 22 C 1.37876 * 120.00030 * 180.02562 * 20 19 17 23 23 N 1.31513 * 119.99865 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99954 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47328 * 269.99615 * 24 22 20 26 26 H 1.48498 * 109.47182 * 30.00048 * 24 22 20 27 27 H 1.48504 * 109.46697 * 149.99963 * 24 22 20 28 28 H 1.08997 * 109.46973 * 270.16453 * 1 2 3 29 29 H 1.08999 * 109.47033 * 30.16060 * 1 2 3 30 30 H 1.08996 * 109.46645 * 150.16489 * 1 2 3 31 31 H 0.96994 * 120.00004 * 180.02562 * 7 6 5 32 32 H 1.08993 * 117.56072 * 141.93065 * 11 10 8 33 33 H 1.09001 * 117.45300 * 356.98951 * 11 10 8 34 34 H 1.08992 * 110.76870 * 282.58044 * 14 12 11 35 35 H 1.09001 * 110.76492 * 159.18185 * 14 12 11 36 36 H 1.09008 * 110.65932 * 279.10729 * 15 14 12 37 37 H 1.09006 * 110.80353 * 156.06440 * 15 14 12 38 38 H 1.09005 * 109.47321 * 60.00364 * 19 17 16 39 39 H 1.08997 * 109.47333 * 300.00724 * 19 17 16 40 40 H 0.97000 * 120.00119 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3185 1.1172 0.0000 4 7 3.5253 0.6639 -0.0058 5 7 3.5190 -0.6203 -0.0040 6 6 2.2863 -1.0748 0.0036 7 7 1.8991 -2.4083 0.0071 8 6 2.8320 -3.3808 0.0032 9 8 4.0073 -3.0942 0.0899 10 6 2.4150 -4.8246 -0.1090 11 6 3.4625 -5.8904 -0.4472 12 6 2.3848 -5.5318 -1.4741 13 1 2.6551 -5.0202 -2.3979 14 6 1.0820 -6.3661 -1.4654 15 6 0.7982 -6.5385 0.0482 16 7 1.2015 -5.2335 0.6204 17 6 0.5808 -4.5542 1.6052 18 8 1.0686 -3.5312 2.0369 19 6 -0.7194 -5.0658 2.1699 20 6 -1.2009 -4.1306 3.2492 21 1 -0.6234 -3.2534 3.5007 22 6 -2.3787 -4.3950 3.9154 23 7 -2.7991 -3.5787 4.8569 24 14 -3.3772 -5.9128 3.4808 25 1 -4.3487 -5.5761 2.4093 26 1 -2.4666 -6.9847 3.0044 27 1 -4.1102 -6.3841 4.6833 28 1 -0.3633 0.0030 1.0276 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3632 -0.8914 -0.5113 31 1 0.9572 -2.6398 0.0124 32 1 3.3793 -6.8555 0.0523 33 1 4.4789 -5.5507 -0.6459 34 1 1.2395 -7.3337 -1.9417 35 1 0.2716 -5.8224 -1.9510 36 1 1.4036 -7.3442 0.4637 37 1 -0.2612 -6.7250 0.2247 38 1 -0.5666 -6.0594 2.5912 39 1 -1.4645 -5.1184 1.3762 40 1 -3.6279 -3.7645 5.3254 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:47 Heat of formation + Delta-G solvation = 118.139568 kcal Electronic energy + Delta-G solvation = -27872.737469 eV Core-core repulsion = 23921.122588 eV Total energy + Delta-G solvation = -3951.614880 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.87075 -41.27655 -39.01108 -38.08072 -35.79247 -34.40725 -33.27889 -32.84014 -31.25272 -30.34651 -29.76586 -28.15002 -25.28473 -24.55198 -23.64850 -23.17489 -21.92266 -20.98509 -20.13896 -19.22652 -18.14565 -17.52946 -16.84432 -16.79610 -16.54907 -16.04532 -15.60029 -15.02386 -14.94996 -14.63947 -14.37437 -13.97802 -13.84435 -13.67806 -13.45962 -13.12618 -12.91620 -12.73580 -12.35504 -12.23525 -12.04971 -11.88742 -11.54829 -11.40686 -11.10423 -10.95668 -10.85557 -10.76700 -10.66347 -10.34463 -10.20137 -10.03394 -9.50041 -9.30521 -8.96058 -8.79358 -8.55162 -6.23842 -4.26298 1.03992 1.51903 2.06582 2.58961 2.80126 2.93507 3.01511 3.09798 3.14876 3.20522 3.52637 3.99880 4.10335 4.20706 4.25653 4.38712 4.57254 4.72397 4.88429 4.96555 5.05737 5.08395 5.26822 5.31092 5.32801 5.34377 5.44450 5.48327 5.55326 5.59912 5.74953 5.78216 5.79143 6.17170 6.34678 6.41998 6.61032 6.90924 7.26166 7.63691 7.82999 8.28892 8.58423 8.68302 8.93388 9.32569 10.88516 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.005438 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.441598 B = 5147.420400 C = 7074.696768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.399 5.399 3 N -0.089 5.089 4 N -0.030 5.030 5 N -0.319 5.319 6 C 0.482 3.518 7 N -0.608 5.608 8 C 0.579 3.421 9 O -0.464 6.464 10 C 0.053 3.947 11 C -0.117 4.117 12 C -0.150 4.150 13 H 0.127 0.873 14 C -0.107 4.107 15 C 0.096 3.904 16 N -0.604 5.604 17 C 0.533 3.467 18 O -0.517 6.517 19 C -0.019 4.019 20 C -0.521 4.521 21 H 0.092 0.908 22 C 0.073 3.927 23 N -0.891 5.891 24 Si 0.873 3.127 25 H -0.274 1.274 26 H -0.266 1.266 27 H -0.284 1.284 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.425 0.575 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 -6.484 -16.567 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.201 5.201 3 N -0.077 5.077 4 N -0.027 5.027 5 N -0.180 5.180 6 C 0.116 3.884 7 N -0.263 5.263 8 C 0.363 3.637 9 O -0.330 6.330 10 C -0.038 4.038 11 C -0.156 4.156 12 C -0.170 4.170 13 H 0.145 0.855 14 C -0.145 4.145 15 C -0.027 4.027 16 N -0.342 5.342 17 C 0.326 3.674 18 O -0.391 6.391 19 C -0.058 4.058 20 C -0.559 4.559 21 H 0.110 0.890 22 C -0.130 4.130 23 N -0.528 5.528 24 Si 0.700 3.300 25 H -0.200 1.200 26 H -0.191 1.191 27 H -0.209 1.209 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.265 0.735 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.746 -4.677 -15.992 17.325 hybrid contribution -2.251 -1.536 0.157 2.730 sum 2.495 -6.213 -15.835 17.192 Atomic orbital electron populations 1.22213 0.72022 1.05265 1.05882 1.51421 1.09632 1.03598 1.55446 1.82522 0.95160 1.05441 1.24551 1.77968 1.12872 1.02737 1.09103 1.75165 1.14116 1.02333 1.26358 1.21660 0.87186 0.84082 0.95422 1.42692 1.12398 0.99187 1.72013 1.19047 0.84995 0.84538 0.75121 1.90853 1.16557 1.82025 1.43556 1.21247 0.93892 0.90017 0.98640 1.23454 0.95412 0.98174 0.98572 1.23888 0.98131 1.01956 0.92998 0.85492 1.22375 0.95257 1.00636 0.96218 1.22625 1.02264 0.85373 0.92400 1.48930 1.24268 1.22979 1.37992 1.21649 0.86722 0.83282 0.75757 1.90679 1.66340 1.24910 1.57135 1.19682 0.88963 0.99323 0.97834 1.20916 1.07583 1.10218 1.17186 0.88995 1.24955 0.97105 0.96282 0.94638 1.69878 1.22433 1.36944 1.23570 0.86915 0.80743 0.83834 0.78535 1.20014 1.19094 1.20932 0.88225 0.87681 0.89012 0.73480 0.87131 0.86007 0.89084 0.89619 0.90482 0.88549 0.93281 0.93738 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 11.41 59.85 0.68 1.62 16 2 N -0.40 -6.16 4.09 -68.56 -0.28 -6.44 16 3 N -0.09 -1.54 13.93 60.35 0.84 -0.70 16 4 N -0.03 -0.58 13.38 60.35 0.81 0.22 16 5 N -0.32 -6.39 10.42 30.17 0.31 -6.08 16 6 C 0.48 8.51 8.61 -319.89 -2.76 5.76 16 7 N -0.61 -9.82 3.94 -12.67 -0.05 -9.87 16 8 C 0.58 9.69 6.47 -10.99 -0.07 9.61 16 9 O -0.46 -9.11 15.33 5.56 0.09 -9.02 16 10 C 0.05 0.69 3.29 -131.99 -0.43 0.26 16 11 C -0.12 -1.17 9.46 -26.56 -0.25 -1.42 16 12 C -0.15 -1.30 7.04 -89.26 -0.63 -1.93 16 13 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.11 -0.74 7.01 -24.80 -0.17 -0.91 16 15 C 0.10 0.92 6.51 -2.13 -0.01 0.90 16 16 N -0.60 -8.45 3.25 -156.45 -0.51 -8.96 16 17 C 0.53 9.98 7.02 -10.99 -0.08 9.90 16 18 O -0.52 -11.55 12.46 5.56 0.07 -11.48 16 19 C -0.02 -0.37 3.38 -29.03 -0.10 -0.47 16 20 C -0.52 -13.64 9.48 -34.44 -0.33 -13.96 16 21 H 0.09 2.78 7.00 -52.49 -0.37 2.41 16 22 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 23 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 24 Si 0.87 18.87 27.47 -169.99 -4.67 14.20 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.27 -5.27 6.54 56.52 0.37 -4.90 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 0.77 7.65 -51.93 -0.40 0.37 16 31 H 0.42 6.21 6.37 -40.82 -0.26 5.95 16 32 H 0.11 0.94 7.14 -51.93 -0.37 0.56 16 33 H 0.12 1.23 7.93 -51.93 -0.41 0.82 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.64 7.28 -51.92 -0.38 0.26 16 37 H 0.10 0.88 7.26 -51.93 -0.38 0.50 16 38 H 0.05 0.97 7.20 -51.93 -0.37 0.59 16 39 H 0.04 0.81 7.46 -51.93 -0.39 0.42 16 40 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -36.04 338.42 -6.36 -42.40 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.60 Total: 4.42 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: -4.24 Total: 11.20 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 1.90 Total: -56.81 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.15 Total: -20.50 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.67 Total: 14.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.04 -6.36 -42.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.543 kcal (2) G-P(sol) polarization free energy of solvation -36.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds