Wall clock time and date at job start Fri Apr 10 2020 14:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40590 * 127.37790 * 2 1 4 4 N 1.28914 * 106.79115 * 180.26751 * 3 2 1 5 5 N 1.28419 * 110.30325 * 359.74586 * 4 3 2 6 6 C 1.31384 * 110.52132 * 359.97438 * 5 4 3 7 7 N 1.38861 * 126.43058 * 179.97438 * 6 5 4 8 8 C 1.34773 * 119.99755 * 0.03414 * 7 6 5 9 9 O 1.21280 * 120.00164 * 5.09636 * 8 7 6 10 10 C 1.50700 * 120.00016 * 185.09673 * 8 7 6 11 11 C 1.53210 * 119.58062 * 165.47619 * 10 8 7 12 12 C 1.53120 * 60.25981 * 249.43702 * 11 10 8 13 13 H 1.09000 * 120.25016 * 111.92462 * 12 11 10 14 14 C 1.54710 * 117.55389 * 267.94426 * 12 11 10 15 15 C 1.54959 * 102.69595 * 40.88253 * 14 12 11 16 16 N 1.47373 * 117.18083 * 321.11630 * 10 8 7 17 17 C 1.34776 * 126.94618 * 344.28718 * 16 10 8 18 18 O 1.21273 * 120.00079 * 355.04529 * 17 16 10 19 19 C 1.50701 * 120.00059 * 175.03635 * 17 16 10 20 20 C 1.50703 * 109.47296 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99851 * 0.02562 * 20 19 17 22 22 C 1.37876 * 120.00030 * 180.02562 * 20 19 17 23 23 N 1.31513 * 119.99865 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99954 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47328 * 269.99615 * 24 22 20 26 26 H 1.48498 * 109.47182 * 30.00048 * 24 22 20 27 27 H 1.48504 * 109.46697 * 149.99963 * 24 22 20 28 28 H 1.08997 * 109.46973 * 270.16453 * 1 2 3 29 29 H 1.08999 * 109.47033 * 30.16060 * 1 2 3 30 30 H 1.08996 * 109.46645 * 150.16489 * 1 2 3 31 31 H 0.96994 * 120.00004 * 180.02562 * 7 6 5 32 32 H 1.08993 * 117.56072 * 141.93065 * 11 10 8 33 33 H 1.09001 * 117.45300 * 356.98951 * 11 10 8 34 34 H 1.08992 * 110.76870 * 282.58044 * 14 12 11 35 35 H 1.09001 * 110.76492 * 159.18185 * 14 12 11 36 36 H 1.09008 * 110.65932 * 279.10729 * 15 14 12 37 37 H 1.09006 * 110.80353 * 156.06440 * 15 14 12 38 38 H 1.09005 * 109.47321 * 60.00364 * 19 17 16 39 39 H 1.08997 * 109.47333 * 300.00724 * 19 17 16 40 40 H 0.97000 * 120.00119 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3185 1.1172 0.0000 4 7 3.5253 0.6639 -0.0058 5 7 3.5190 -0.6203 -0.0040 6 6 2.2863 -1.0748 0.0036 7 7 1.8991 -2.4083 0.0071 8 6 2.8320 -3.3808 0.0032 9 8 4.0073 -3.0942 0.0899 10 6 2.4150 -4.8246 -0.1090 11 6 3.4625 -5.8904 -0.4472 12 6 2.3848 -5.5318 -1.4741 13 1 2.6551 -5.0202 -2.3979 14 6 1.0820 -6.3661 -1.4654 15 6 0.7982 -6.5385 0.0482 16 7 1.2015 -5.2335 0.6204 17 6 0.5808 -4.5542 1.6052 18 8 1.0686 -3.5312 2.0369 19 6 -0.7194 -5.0658 2.1699 20 6 -1.2009 -4.1306 3.2492 21 1 -0.6234 -3.2534 3.5007 22 6 -2.3787 -4.3950 3.9154 23 7 -2.7991 -3.5787 4.8569 24 14 -3.3772 -5.9128 3.4808 25 1 -4.3487 -5.5761 2.4093 26 1 -2.4666 -6.9847 3.0044 27 1 -4.1102 -6.3841 4.6833 28 1 -0.3633 0.0030 1.0276 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3632 -0.8914 -0.5113 31 1 0.9572 -2.6398 0.0124 32 1 3.3793 -6.8555 0.0523 33 1 4.4789 -5.5507 -0.6459 34 1 1.2395 -7.3337 -1.9417 35 1 0.2716 -5.8224 -1.9510 36 1 1.4036 -7.3442 0.4637 37 1 -0.2612 -6.7250 0.2247 38 1 -0.5666 -6.0594 2.5912 39 1 -1.4645 -5.1184 1.3762 40 1 -3.6279 -3.7645 5.3254 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:46 Heat of formation + Delta-G solvation = 91.997046 kcal Electronic energy + Delta-G solvation = -27873.871093 eV Core-core repulsion = 23921.122588 eV Total energy + Delta-G solvation = -3952.748505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.138 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.23913 -42.33293 -40.27681 -39.33420 -37.09744 -35.67639 -35.04769 -34.10445 -32.57770 -31.50433 -31.16361 -29.25726 -26.49616 -25.72022 -24.92919 -24.48745 -23.21875 -22.12446 -21.07268 -20.39392 -19.41345 -19.10651 -18.33480 -18.12808 -17.83940 -17.19355 -16.76342 -16.43734 -16.21994 -15.90580 -15.66811 -15.23907 -15.07527 -14.77912 -14.56369 -14.28595 -13.95573 -13.88872 -13.78662 -13.36054 -13.25677 -13.03673 -12.84040 -12.81762 -12.40141 -12.15621 -12.07435 -11.88335 -11.81670 -11.67909 -11.60648 -11.48795 -11.08120 -10.78590 -10.73342 -10.31850 -9.57731 -8.24768 -6.34274 -0.30443 0.29781 0.77835 1.31580 1.41569 1.46328 1.55652 1.62083 1.65332 1.87107 2.39712 2.63369 2.80501 3.09461 3.19049 3.27162 3.57537 3.70211 3.85369 3.97516 4.07644 4.10369 4.12561 4.37267 4.41189 4.44545 4.52675 4.64269 4.68908 4.75094 4.85185 5.04089 5.05735 5.08987 5.16929 5.25332 5.29952 5.48743 5.70535 6.22198 6.45985 6.59099 6.83123 7.19979 7.28665 7.32876 8.92134 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.005438 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.441598 B = 5147.420400 C = 7074.696768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.388 5.388 3 N -0.089 5.089 4 N -0.050 5.050 5 N -0.352 5.352 6 C 0.470 3.530 7 N -0.599 5.599 8 C 0.570 3.430 9 O -0.506 6.506 10 C 0.008 3.992 11 C -0.108 4.108 12 C -0.107 4.107 13 H 0.142 0.858 14 C -0.094 4.094 15 C 0.082 3.918 16 N -0.593 5.593 17 C 0.531 3.469 18 O -0.571 6.571 19 C -0.014 4.014 20 C -0.530 4.530 21 H 0.029 0.971 22 C 0.004 3.996 23 N -0.954 5.954 24 Si 0.955 3.045 25 H -0.256 1.256 26 H -0.225 1.225 27 H -0.296 1.296 28 H 0.089 0.911 29 H 0.137 0.863 30 H 0.117 0.883 31 H 0.431 0.569 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -10.624 -19.840 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.191 5.191 3 N -0.077 5.077 4 N -0.047 5.047 5 N -0.213 5.213 6 C 0.104 3.896 7 N -0.255 5.255 8 C 0.357 3.643 9 O -0.375 6.375 10 C -0.082 4.082 11 C -0.147 4.147 12 C -0.126 4.126 13 H 0.160 0.840 14 C -0.132 4.132 15 C -0.038 4.038 16 N -0.329 5.329 17 C 0.323 3.677 18 O -0.449 6.449 19 C -0.053 4.053 20 C -0.568 4.568 21 H 0.047 0.953 22 C -0.193 4.193 23 N -0.594 5.594 24 Si 0.776 3.224 25 H -0.181 1.181 26 H -0.148 1.148 27 H -0.222 1.222 28 H 0.107 0.893 29 H 0.155 0.845 30 H 0.136 0.864 31 H 0.272 0.728 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.165 -8.873 -19.341 21.513 hybrid contribution -1.729 -0.188 1.186 2.105 sum 1.436 -9.061 -18.155 20.341 Atomic orbital electron populations 1.22661 0.69309 1.08222 1.06077 1.51653 1.10879 1.02477 1.54081 1.82391 0.95074 1.06299 1.23935 1.77927 1.13695 1.02729 1.10333 1.75044 1.15994 1.02782 1.27526 1.21788 0.87143 0.85121 0.95522 1.42791 1.12763 0.98490 1.71449 1.19904 0.84561 0.86075 0.73807 1.90818 1.18160 1.82924 1.45633 1.21461 0.95515 0.88371 1.02805 1.23617 0.95005 0.97465 0.98630 1.24167 0.98053 0.99292 0.91137 0.83988 1.22484 0.93986 1.02272 0.94423 1.23116 1.03440 0.83219 0.94052 1.48671 1.24055 1.23937 1.36264 1.21266 0.86657 0.83034 0.76705 1.90672 1.67490 1.27346 1.59430 1.19541 0.90659 0.98134 0.96979 1.21096 1.07101 1.09552 1.19030 0.95303 1.26092 0.98558 1.00490 0.94127 1.70097 1.23358 1.40102 1.25816 0.85626 0.79161 0.79349 0.78229 1.18058 1.14768 1.22220 0.89296 0.84451 0.86426 0.72779 0.84988 0.86613 0.85277 0.88347 0.88612 0.87370 0.91582 0.90269 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.62 11.41 127.77 1.46 3.08 16 2 N -0.39 -12.29 4.09 -370.83 -1.52 -13.81 16 3 N -0.09 -3.16 13.93 37.02 0.52 -2.65 16 4 N -0.05 -2.03 13.38 37.02 0.50 -1.54 16 5 N -0.35 -14.83 10.42 -58.46 -0.61 -15.44 16 6 C 0.47 17.26 8.61 260.47 2.24 19.51 16 7 N -0.60 -19.84 3.94 -312.38 -1.23 -21.07 16 8 C 0.57 19.32 6.47 87.66 0.57 19.89 16 9 O -0.51 -20.68 15.33 -3.03 -0.05 -20.73 16 10 C 0.01 0.20 3.29 3.02 0.01 0.21 16 11 C -0.11 -1.82 9.46 30.70 0.29 -1.53 16 12 C -0.11 -1.37 7.04 -9.91 -0.07 -1.44 16 13 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 14 C -0.09 -0.68 7.01 31.85 0.22 -0.46 16 15 C 0.08 1.11 6.51 86.74 0.56 1.68 16 16 N -0.59 -14.98 3.25 -767.27 -2.49 -17.47 16 17 C 0.53 19.48 7.02 87.66 0.62 20.10 16 18 O -0.57 -26.60 12.46 -3.01 -0.04 -26.64 16 19 C -0.01 -0.52 3.38 29.10 0.10 -0.42 16 20 C -0.53 -28.42 9.48 25.60 0.24 -28.17 16 21 H 0.03 1.87 7.00 -2.91 -0.02 1.85 16 22 C 0.00 0.21 5.47 84.65 0.46 0.68 16 23 N -0.95 -57.50 13.96 21.45 0.30 -57.20 16 24 Si 0.95 37.41 27.47 68.60 1.88 39.29 16 25 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 26 H -0.23 -7.29 6.54 99.48 0.65 -6.64 16 27 H -0.30 -12.12 7.11 99.48 0.71 -11.41 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.12 1.85 7.65 -2.39 -0.02 1.83 16 31 H 0.43 12.71 6.37 -92.71 -0.59 12.12 16 32 H 0.13 1.64 7.14 -2.39 -0.02 1.62 16 33 H 0.12 2.12 7.93 -2.39 -0.02 2.10 16 34 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.10 1.01 7.28 -2.38 -0.02 0.99 16 37 H 0.11 1.27 7.26 -2.38 -0.02 1.26 16 38 H 0.07 2.34 7.20 -2.38 -0.02 2.32 16 39 H 0.08 2.51 7.46 -2.39 -0.02 2.50 16 40 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -88.18 338.42 4.43 -83.75 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.46 Total: 20.41 kcal Atomic # 6 Polarization: 26.40 SS G_CDS: 6.71 Total: 33.11 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -4.54 Total: -129.19 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -0.08 Total: -47.36 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 1.88 Total: 39.29 kcal Total: -88.18 4.43 -83.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.742 kcal (2) G-P(sol) polarization free energy of solvation -88.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds