Wall clock time and date at job start Fri Apr 10 2020 14:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47178 * 2 1 4 4 C 1.46503 * 119.99947 * 270.00219 * 3 2 1 5 5 C 1.50694 * 109.46967 * 269.99634 * 4 3 2 6 6 H 1.08001 * 119.99904 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99916 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00072 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99594 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47410 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46915 * 120.00389 * 9 7 5 12 12 H 1.48500 * 109.46764 * 239.99714 * 9 7 5 13 13 C 1.34780 * 119.99910 * 89.99913 * 3 2 1 14 14 O 1.21287 * 119.99825 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00264 * 359.97438 * 13 3 2 16 16 N 1.46498 * 109.47127 * 179.97438 * 15 13 3 17 17 C 1.35631 * 119.82325 * 90.00808 * 16 15 13 18 18 N 1.30122 * 122.87766 * 180.27877 * 17 16 15 19 19 C 1.34086 * 121.86418 * 359.47563 * 18 17 16 20 20 C 1.40047 * 119.50519 * 0.50194 * 19 18 17 21 21 N 1.34051 * 108.08399 * 179.75834 * 20 19 18 22 22 N 1.28788 * 109.97748 * 0.02562 * 21 20 19 23 23 N 1.36246 * 134.41141 * 180.18329 * 19 18 17 24 24 C 1.46495 * 126.66256 * 0.28869 * 23 19 18 25 25 C 1.35292 * 119.83016 * 270.02362 * 16 15 13 26 26 O 1.21835 * 121.20261 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.46969 * 299.99915 * 1 2 3 28 28 H 1.08997 * 109.47332 * 59.99660 * 1 2 3 29 29 H 1.08995 * 109.46987 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46969 * 240.00085 * 2 1 3 31 31 H 1.09006 * 109.46863 * 119.99980 * 2 1 3 32 32 H 1.09000 * 109.46882 * 29.99976 * 4 3 2 33 33 H 1.09003 * 109.46608 * 149.99827 * 4 3 2 34 34 H 0.96999 * 120.00026 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.46779 * 59.99683 * 15 13 3 36 36 H 1.08996 * 109.47505 * 300.00100 * 15 13 3 37 37 H 1.08002 * 118.55845 * 359.97438 * 17 16 15 38 38 H 1.09000 * 109.47284 * 90.00070 * 24 23 19 39 39 H 1.09000 * 109.47054 * 210.00449 * 24 23 19 40 40 H 1.09000 * 109.47116 * 329.99825 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9131 2.0955 -3.4175 10 1 6.6008 1.2406 -2.4169 11 1 5.9201 1.4163 -4.7381 12 1 6.6208 3.3965 -3.5263 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3093 2.2037 3.5858 17 6 1.3466 3.0098 4.0986 18 7 1.5647 3.8327 5.0827 19 6 2.7665 3.9324 5.6690 20 6 3.8259 3.1402 5.2094 21 7 4.9089 3.4255 5.9462 22 7 4.6202 4.3231 6.8234 23 7 3.2700 4.6808 6.6901 24 6 2.5429 5.6670 7.4930 25 6 3.5618 2.2242 4.0970 26 8 4.4384 1.5066 3.6486 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1383 34 1 3.6751 3.5162 -4.4440 35 1 2.6211 0.4186 2.5302 36 1 0.9432 1.0126 2.5300 37 1 0.3569 2.9705 3.6680 38 1 2.1019 5.1755 8.3603 39 1 3.2318 6.4431 7.8265 40 1 1.7540 6.1162 6.8898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645871560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:09 Heat of formation + Delta-G solvation = 72.765358 kcal Electronic energy + Delta-G solvation = -27000.924481 eV Core-core repulsion = 23047.342027 eV Total energy + Delta-G solvation = -3953.582454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.66554 -40.82294 -38.96600 -37.75850 -35.58533 -34.90897 -34.43838 -32.85018 -30.39727 -30.28176 -29.25776 -27.95850 -26.72223 -25.28080 -24.03290 -23.17129 -22.52822 -21.64213 -19.36517 -19.12178 -18.77146 -17.48884 -17.08669 -16.60201 -16.41678 -16.07533 -15.31010 -15.08035 -15.00538 -14.77857 -14.63803 -14.10372 -13.65891 -13.51655 -13.44664 -13.29192 -13.18578 -12.81798 -12.53592 -12.16542 -12.06526 -11.84457 -11.76996 -11.28845 -11.01882 -10.94893 -10.83160 -10.62763 -10.57279 -10.18296 -10.17296 -9.99941 -9.68306 -9.20313 -8.59602 -8.47624 -7.86596 -6.09319 -4.13746 0.22032 1.35829 1.56085 2.00101 2.02024 3.03549 3.26775 3.29514 3.38116 3.43908 3.49944 3.70344 3.78268 4.07877 4.23150 4.42800 4.56678 4.66314 4.74887 4.76629 5.01131 5.05339 5.12867 5.21877 5.26263 5.42764 5.44929 5.57730 5.69613 5.86188 6.09273 6.11315 6.26086 6.32367 6.88675 7.29648 7.29877 7.38834 7.51281 7.85702 7.87118 8.15388 8.17904 8.70844 8.92749 9.52077 10.98848 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.003618 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.991881 B = 7736.301675 C = 8643.888709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 N -0.588 5.588 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.491 3.509 14 O -0.528 6.528 15 C 0.072 3.928 16 N -0.520 5.520 17 C 0.440 3.560 18 N -0.534 5.534 19 C 0.308 3.692 20 C -0.148 4.148 21 N -0.161 5.161 22 N -0.047 5.047 23 N -0.360 5.360 24 C 0.097 3.903 25 C 0.591 3.409 26 O -0.480 6.480 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.219 0.781 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.323 -2.565 18.366 22.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.024 4.024 3 N -0.320 5.320 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.275 3.725 14 O -0.405 6.405 15 C -0.054 4.054 16 N -0.242 5.242 17 C 0.151 3.849 18 N -0.261 5.261 19 C 0.065 3.935 20 C -0.289 4.289 21 N -0.035 5.035 22 N -0.028 5.028 23 N -0.149 5.149 24 C -0.044 4.044 25 C 0.380 3.620 26 O -0.348 6.348 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.235 0.765 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.642 -1.467 19.149 21.956 hybrid contribution 0.575 -0.504 -1.178 1.404 sum -10.067 -1.971 17.971 20.693 Atomic orbital electron populations 1.22234 0.96375 1.01773 1.02393 1.21540 0.93691 0.83901 1.03319 1.48255 1.62997 1.13309 1.07398 1.19336 0.96568 0.93578 0.77621 1.21469 0.96850 1.32096 1.06317 0.92263 1.24915 0.97920 0.94793 0.96343 1.69930 1.35647 1.33424 1.14363 0.86452 0.84574 0.78209 0.78325 1.19637 1.20892 1.20848 1.20245 0.79830 0.87372 0.85097 1.90753 1.45173 1.17872 1.86696 1.22122 1.04810 0.93869 0.84582 1.46215 1.10607 1.36686 1.30693 1.24856 0.94204 0.80595 0.85260 1.67177 1.19911 1.24659 1.14381 1.19484 0.91237 0.92250 0.90511 1.22045 0.92308 1.08665 1.05898 1.74113 1.23027 1.05861 1.00459 1.82113 0.89197 1.12915 1.18536 1.50003 1.09715 1.30632 1.24538 1.22140 0.96802 0.90154 0.95290 1.16876 0.81506 0.82298 0.81302 1.90958 1.42858 1.40924 1.60092 0.93139 0.91751 0.91819 0.89351 0.91579 0.94623 0.93820 0.92733 0.85258 0.85604 0.76463 0.89525 0.88210 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.24 37.16 0.38 -1.30 16 2 C 0.10 1.32 5.93 -4.04 -0.02 1.30 16 3 N -0.59 -11.04 2.46 -175.06 -0.43 -11.47 16 4 C 0.25 6.09 5.16 -5.20 -0.03 6.06 16 5 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 9 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.49 9.02 7.74 -10.98 -0.09 8.93 16 14 O -0.53 -12.46 16.01 5.55 0.09 -12.37 16 15 C 0.07 0.86 4.41 -5.20 -0.02 0.84 16 16 N -0.52 -6.92 2.09 -120.33 -0.25 -7.17 16 17 C 0.44 4.40 11.43 -90.15 -1.03 3.37 16 18 N -0.53 -6.21 10.37 -13.48 -0.14 -6.35 16 19 C 0.31 4.34 8.10 -155.83 -1.26 3.08 16 20 C -0.15 -2.54 7.48 -82.89 -0.62 -3.16 16 21 N -0.16 -2.91 12.35 33.21 0.41 -2.50 16 22 N -0.05 -0.72 13.74 60.35 0.83 0.11 16 23 N -0.36 -4.52 4.08 -67.29 -0.27 -4.79 16 24 C 0.10 0.65 11.53 59.84 0.69 1.34 16 25 C 0.59 10.39 7.66 -12.70 -0.10 10.29 16 26 O -0.48 -10.08 16.85 5.07 0.09 -10.00 16 27 H 0.05 0.40 7.22 -51.93 -0.37 0.03 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 31 H 0.07 0.69 6.44 -51.93 -0.33 0.35 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.13 1.53 6.72 -51.93 -0.35 1.18 16 36 H 0.13 0.78 7.04 -51.93 -0.37 0.42 16 37 H 0.22 0.97 8.00 -52.49 -0.42 0.55 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -40.13 352.44 -5.90 -46.03 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -4.73 Total: -5.79 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: -2.52 Total: 17.32 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.88 Total: -57.66 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.17 Total: -22.37 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -40.13 -5.90 -46.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645871560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.799 kcal (2) G-P(sol) polarization free energy of solvation -40.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds