Wall clock time and date at job start Fri Apr 10 2020 14:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47178 * 2 1 4 4 C 1.46503 * 119.99947 * 270.00219 * 3 2 1 5 5 C 1.50694 * 109.46967 * 269.99634 * 4 3 2 6 6 H 1.08001 * 119.99904 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99916 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00072 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99594 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47410 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46915 * 120.00389 * 9 7 5 12 12 H 1.48500 * 109.46764 * 239.99714 * 9 7 5 13 13 C 1.34780 * 119.99910 * 89.99913 * 3 2 1 14 14 O 1.21287 * 119.99825 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00264 * 359.97438 * 13 3 2 16 16 N 1.46498 * 109.47127 * 179.97438 * 15 13 3 17 17 C 1.35631 * 119.82325 * 90.00808 * 16 15 13 18 18 N 1.30122 * 122.87766 * 180.27877 * 17 16 15 19 19 C 1.34086 * 121.86418 * 359.47563 * 18 17 16 20 20 C 1.40047 * 119.50519 * 0.50194 * 19 18 17 21 21 N 1.34051 * 108.08399 * 179.75834 * 20 19 18 22 22 N 1.28788 * 109.97748 * 0.02562 * 21 20 19 23 23 N 1.36246 * 134.41141 * 180.18329 * 19 18 17 24 24 C 1.46495 * 126.66256 * 0.28869 * 23 19 18 25 25 C 1.35292 * 119.83016 * 270.02362 * 16 15 13 26 26 O 1.21835 * 121.20261 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.46969 * 299.99915 * 1 2 3 28 28 H 1.08997 * 109.47332 * 59.99660 * 1 2 3 29 29 H 1.08995 * 109.46987 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46969 * 240.00085 * 2 1 3 31 31 H 1.09006 * 109.46863 * 119.99980 * 2 1 3 32 32 H 1.09000 * 109.46882 * 29.99976 * 4 3 2 33 33 H 1.09003 * 109.46608 * 149.99827 * 4 3 2 34 34 H 0.96999 * 120.00026 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.46779 * 59.99683 * 15 13 3 36 36 H 1.08996 * 109.47505 * 300.00100 * 15 13 3 37 37 H 1.08002 * 118.55845 * 359.97438 * 17 16 15 38 38 H 1.09000 * 109.47284 * 90.00070 * 24 23 19 39 39 H 1.09000 * 109.47054 * 210.00449 * 24 23 19 40 40 H 1.09000 * 109.47116 * 329.99825 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9131 2.0955 -3.4175 10 1 6.6008 1.2406 -2.4169 11 1 5.9201 1.4163 -4.7381 12 1 6.6208 3.3965 -3.5263 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3093 2.2037 3.5858 17 6 1.3466 3.0098 4.0986 18 7 1.5647 3.8327 5.0827 19 6 2.7665 3.9324 5.6690 20 6 3.8259 3.1402 5.2094 21 7 4.9089 3.4255 5.9462 22 7 4.6202 4.3231 6.8234 23 7 3.2700 4.6808 6.6901 24 6 2.5429 5.6670 7.4930 25 6 3.5618 2.2242 4.0970 26 8 4.4384 1.5066 3.6486 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1383 34 1 3.6751 3.5162 -4.4440 35 1 2.6211 0.4186 2.5302 36 1 0.9432 1.0126 2.5300 37 1 0.3569 2.9705 3.6680 38 1 2.1019 5.1755 8.3603 39 1 3.2318 6.4431 7.8265 40 1 1.7540 6.1162 6.8898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645871560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:09 Heat of formation + Delta-G solvation = 42.619176 kcal Electronic energy + Delta-G solvation = -27002.231717 eV Core-core repulsion = 23047.342027 eV Total energy + Delta-G solvation = -3954.889690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.138 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.75257 -41.97434 -40.38624 -38.94954 -37.04406 -36.00811 -35.44333 -34.88421 -31.63543 -31.49250 -30.46510 -28.87119 -28.33691 -26.28984 -25.44439 -24.53958 -23.88330 -22.68284 -20.60366 -20.12985 -19.99520 -18.75711 -18.52456 -18.25941 -17.67740 -17.31893 -16.69114 -16.31945 -16.26750 -16.17793 -15.77008 -15.53569 -14.79247 -14.56982 -14.48559 -14.24642 -14.20463 -14.14450 -13.70704 -13.58232 -13.35127 -13.19400 -13.02613 -12.82071 -12.70767 -12.49968 -12.20875 -12.09171 -11.86550 -11.79532 -11.71281 -11.23026 -11.04557 -10.66934 -10.61156 -9.75722 -9.47893 -8.26395 -6.39154 -0.73584 0.10998 0.65064 0.93741 0.98576 1.30818 1.34462 1.45318 1.67304 2.09456 2.31539 2.43950 2.62590 2.71443 3.03813 3.06405 3.45628 3.51334 3.68902 3.89277 4.08116 4.14303 4.30462 4.32495 4.50812 4.57256 4.61349 4.72352 4.76254 4.98216 5.09175 5.14981 5.17098 5.23447 5.31482 5.52735 5.57146 5.82156 6.04798 6.23288 6.39521 6.65773 6.71254 6.74953 7.23882 7.38653 8.80177 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.003618 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.991881 B = 7736.301675 C = 8643.888709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.090 3.910 3 N -0.593 5.593 4 C 0.265 3.735 5 C -0.544 4.544 6 H 0.045 0.955 7 C 0.013 3.987 8 N -0.923 5.923 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.264 1.264 12 H -0.284 1.284 13 C 0.482 3.518 14 O -0.592 6.592 15 C 0.086 3.914 16 N -0.519 5.519 17 C 0.449 3.551 18 N -0.529 5.529 19 C 0.314 3.686 20 C -0.188 4.188 21 N -0.203 5.203 22 N -0.056 5.056 23 N -0.349 5.349 24 C 0.084 3.916 25 C 0.582 3.418 26 O -0.533 6.533 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.031 0.969 33 H 0.001 0.999 34 H 0.267 0.733 35 H 0.136 0.864 36 H 0.202 0.798 37 H 0.283 0.717 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.070 -3.505 19.865 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.032 4.032 3 N -0.324 5.324 4 C 0.144 3.856 5 C -0.583 4.583 6 H 0.063 0.937 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.188 1.188 12 H -0.210 1.210 13 C 0.269 3.731 14 O -0.473 6.473 15 C -0.038 4.038 16 N -0.239 5.239 17 C 0.162 3.838 18 N -0.256 5.256 19 C 0.070 3.930 20 C -0.330 4.330 21 N -0.076 5.076 22 N -0.037 5.037 23 N -0.139 5.139 24 C -0.054 4.054 25 C 0.373 3.627 26 O -0.406 6.406 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.049 0.951 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.218 0.782 37 H 0.298 0.702 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.460 -2.429 20.680 24.794 hybrid contribution 1.334 -0.136 -1.598 2.086 sum -12.126 -2.565 19.083 22.754 Atomic orbital electron populations 1.22181 0.93134 1.03891 1.02698 1.21928 0.96307 0.80674 1.04262 1.48230 1.63103 1.15244 1.05797 1.18696 0.94714 0.91778 0.80454 1.21764 0.98413 1.31805 1.06319 0.93675 1.25704 1.01702 0.94640 0.96587 1.70014 1.37288 1.34143 1.14812 0.85546 0.79901 0.77931 0.78534 1.19957 1.18830 1.21008 1.21336 0.78109 0.86839 0.86845 1.90724 1.47813 1.20945 1.87852 1.22319 1.09196 0.92217 0.80102 1.46258 1.09674 1.37368 1.30598 1.26252 0.95340 0.78344 0.83892 1.67344 1.18108 1.25155 1.14957 1.19697 0.91252 0.91526 0.90489 1.22321 0.93415 1.10327 1.06914 1.74071 1.24472 1.07345 1.01728 1.81968 0.90973 1.12592 1.18175 1.50389 1.08859 1.30460 1.24163 1.22683 0.97234 0.89732 0.95791 1.17235 0.82473 0.81720 0.81260 1.90906 1.44793 1.43050 1.61810 0.90016 0.94327 0.88708 0.91423 0.87768 0.95134 0.98102 0.92387 0.84670 0.78152 0.70203 0.86896 0.86573 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 10.24 71.98 0.74 -1.83 16 2 C 0.09 2.18 5.93 86.38 0.51 2.69 16 3 N -0.59 -22.01 2.46 -826.14 -2.03 -24.04 16 4 C 0.27 13.51 5.16 85.63 0.44 13.95 16 5 C -0.54 -31.46 9.39 25.60 0.24 -31.22 16 6 H 0.04 2.67 7.81 -2.91 -0.02 2.64 16 7 C 0.01 0.76 5.46 84.66 0.46 1.22 16 8 N -0.92 -55.36 13.29 21.45 0.28 -55.07 16 9 Si 0.96 46.34 29.54 68.60 2.03 48.37 16 10 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 13 C 0.48 17.24 7.74 87.66 0.68 17.92 16 14 O -0.59 -28.53 16.01 -3.05 -0.05 -28.58 16 15 C 0.09 1.75 4.41 85.63 0.38 2.13 16 16 N -0.52 -12.58 2.09 -652.49 -1.36 -13.94 16 17 C 0.45 7.19 11.43 180.18 2.06 9.25 16 18 N -0.53 -10.70 10.37 -196.57 -2.04 -12.74 16 19 C 0.31 8.48 8.10 133.69 1.08 9.56 16 20 C -0.19 -6.59 7.48 41.40 0.31 -6.28 16 21 N -0.20 -7.63 12.35 -48.84 -0.60 -8.24 16 22 N -0.06 -1.75 13.74 37.02 0.51 -1.24 16 23 N -0.35 -8.33 4.08 -366.79 -1.50 -9.82 16 24 C 0.08 0.90 11.53 127.77 1.47 2.37 16 25 C 0.58 20.65 7.66 86.32 0.66 21.31 16 26 O -0.53 -23.26 16.85 -4.78 -0.08 -23.34 16 27 H 0.08 0.80 7.22 -2.39 -0.02 0.78 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 31 H 0.10 1.74 6.44 -2.38 -0.02 1.72 16 32 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 33 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 34 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.14 2.77 6.72 -2.38 -0.02 2.75 16 36 H 0.20 1.02 7.04 -2.39 -0.02 1.00 16 37 H 0.28 0.58 8.00 -2.91 -0.02 0.55 16 38 H 0.11 0.68 8.14 -2.39 -0.02 0.67 16 39 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -98.32 352.44 5.28 -93.04 By element: Atomic # 1 Polarization: -6.55 SS G_CDS: 1.09 Total: -5.46 kcal Atomic # 6 Polarization: 32.04 SS G_CDS: 9.04 Total: 41.08 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -6.74 Total: -125.10 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -0.13 Total: -51.92 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -98.32 5.28 -93.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645871560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.661 kcal (2) G-P(sol) polarization free energy of solvation -98.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds