Wall clock time and date at job start Fri Apr 10 2020 14:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00188 * 2 1 4 4 H 1.48494 * 109.47345 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46870 * 300.00087 * 3 2 1 6 6 H 1.48500 * 109.46803 * 59.99647 * 3 2 1 7 7 C 1.37884 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00272 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99385 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46937 * 184.71741 * 9 7 2 11 11 C 1.46896 * 111.00030 * 298.76469 * 10 9 7 12 12 C 1.52995 * 109.47491 * 287.82084 * 11 10 9 13 13 C 1.53001 * 109.47282 * 179.30071 * 12 11 10 14 14 C 1.50699 * 109.47354 * 179.97438 * 13 12 11 15 15 O 1.21238 * 119.99942 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00477 * 179.97438 * 14 13 12 17 17 C 1.34770 * 120.00423 * 180.02562 * 16 14 13 18 18 N 1.34774 * 120.00393 * 180.02562 * 17 16 14 19 19 O 1.21540 * 119.99845 * 359.97438 * 17 16 14 20 20 C 1.46893 * 110.99847 * 62.72243 * 10 9 7 21 21 C 1.50705 * 109.47361 * 66.04590 * 20 10 9 22 22 C 1.38223 * 119.61553 * 95.01984 * 21 20 10 23 23 C 1.38635 * 119.15571 * 179.97438 * 22 21 20 24 24 C 1.38663 * 118.42389 * 0.02562 * 23 22 21 25 25 C 1.38180 * 119.16425 * 359.97438 * 24 23 22 26 26 N 1.31853 * 119.61941 * 274.99975 * 21 20 10 27 27 H 0.97001 * 120.00403 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47107 * 64.72197 * 9 7 2 29 29 H 1.09004 * 109.47517 * 304.71883 * 9 7 2 30 30 H 1.09008 * 109.47084 * 47.82182 * 11 10 9 31 31 H 1.09004 * 109.46941 * 167.81975 * 11 10 9 32 32 H 1.08999 * 109.47349 * 299.30310 * 12 11 10 33 33 H 1.09001 * 109.47123 * 59.30297 * 12 11 10 34 34 H 1.09001 * 109.47640 * 300.00359 * 13 12 11 35 35 H 1.09001 * 109.46857 * 60.00063 * 13 12 11 36 36 H 0.97000 * 119.99335 * 0.02562 * 16 14 13 37 37 H 0.97005 * 119.99849 * 359.97438 * 18 17 16 38 38 H 0.96998 * 120.00474 * 179.97438 * 18 17 16 39 39 H 1.09001 * 109.47022 * 306.04693 * 20 10 9 40 40 H 1.09006 * 109.47378 * 186.04778 * 20 10 9 41 41 H 1.08003 * 120.42285 * 359.96138 * 22 21 20 42 42 H 1.08007 * 120.78252 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.42007 * 179.97438 * 24 23 22 44 44 H 1.08003 * 119.62279 * 180.27252 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2015 -3.6133 0.1151 11 6 3.1292 -3.6331 -1.0238 12 6 2.3859 -4.0938 -2.2792 13 6 3.3479 -4.0977 -3.4689 14 6 2.6160 -4.5521 -4.7053 15 8 1.4409 -4.8436 -4.6414 16 7 3.2673 -4.6336 -5.8824 17 6 2.6126 -5.0395 -6.9883 18 7 3.2641 -5.1214 -8.1652 19 8 1.4348 -5.3326 -6.9240 20 6 2.9319 -3.5534 1.3881 21 6 1.9734 -3.7812 2.5285 22 6 1.8236 -5.0519 3.0514 23 6 0.9396 -5.2505 4.1007 24 6 0.2359 -4.1590 4.5866 25 6 0.4380 -2.9181 4.0132 26 7 1.2877 -2.7660 3.0161 27 1 -0.4851 0.8400 -0.0004 28 1 0.6897 -2.5945 -0.9290 29 1 0.5621 -2.5210 0.8450 30 1 3.5282 -2.6315 -1.1848 31 1 3.9481 -4.3210 -0.8134 32 1 1.9975 -5.1002 -2.1227 33 1 1.5594 -3.4129 -2.4825 34 1 3.7364 -3.0914 -3.6254 35 1 4.1745 -4.7786 -3.2655 36 1 4.2074 -4.4000 -5.9336 37 1 4.2042 -4.8878 -8.2165 38 1 2.7930 -5.4139 -8.9611 39 1 3.3968 -2.5732 1.4945 40 1 3.7025 -4.3243 1.4016 41 1 2.3878 -5.8795 2.6476 42 1 0.8023 -6.2323 4.5295 43 1 -0.4614 -4.2771 5.4029 44 1 -0.1029 -2.0620 4.3888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178387596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:40 Heat of formation + Delta-G solvation = -22.917216 kcal Electronic energy + Delta-G solvation = -26464.688095 eV Core-core repulsion = 22610.496877 eV Total energy + Delta-G solvation = -3854.191218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09680 -39.66924 -38.37373 -36.87140 -34.70412 -33.47436 -33.21563 -32.37712 -31.85146 -30.83202 -27.29363 -26.98670 -24.60624 -23.37188 -22.91071 -22.18063 -20.86420 -20.42407 -19.53378 -18.78671 -17.60713 -16.54913 -16.25731 -16.13294 -16.01160 -15.63538 -15.17884 -15.07354 -14.86249 -14.57223 -14.52086 -13.90221 -13.66220 -13.14405 -13.10590 -12.77768 -12.57582 -12.22717 -11.67607 -11.51989 -11.40364 -11.02237 -10.98312 -10.82671 -10.78310 -10.64785 -10.21567 -10.15505 -10.00632 -9.95716 -9.85774 -9.60681 -9.48551 -9.29291 -8.65440 -8.49612 -8.23162 -7.11637 -5.85651 -3.91028 1.62342 1.81175 2.13887 2.42736 3.23710 3.34629 3.42565 3.43574 4.01040 4.29768 4.53068 4.64721 4.88259 5.04946 5.18669 5.28089 5.30675 5.46306 5.47306 5.56554 5.62455 5.75862 5.85753 5.91039 5.99108 6.08701 6.19196 6.22092 6.35769 6.38000 6.48099 6.52999 6.60091 6.76523 6.83628 6.95407 7.21085 7.27134 7.39715 7.72422 8.06729 8.08762 8.12316 8.27630 8.37539 8.43542 8.72618 9.15155 9.72558 11.20982 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.003325 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.200245 B = 8420.291332 C =10190.846231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.183 3.817 10 N -0.538 5.538 11 C 0.062 3.938 12 C -0.098 4.098 13 C -0.132 4.132 14 C 0.513 3.487 15 O -0.458 6.458 16 N -0.695 5.695 17 C 0.693 3.307 18 N -0.862 5.862 19 O -0.535 6.535 20 C 0.106 3.894 21 C 0.155 3.845 22 C -0.166 4.166 23 C -0.086 4.086 24 C -0.190 4.190 25 C 0.099 3.901 26 N -0.442 5.442 27 H 0.258 0.742 28 H 0.026 0.974 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.409 0.591 37 H 0.398 0.602 38 H 0.417 0.583 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.282 -10.892 -5.075 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.132 4.132 3 Si 0.711 3.289 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.058 3.942 10 N -0.262 5.262 11 C -0.067 4.067 12 C -0.136 4.136 13 C -0.173 4.173 14 C 0.300 3.700 15 O -0.325 6.325 16 N -0.362 5.362 17 C 0.392 3.608 18 N -0.432 5.432 19 O -0.406 6.406 20 C -0.023 4.023 21 C 0.017 3.983 22 C -0.186 4.186 23 C -0.112 4.112 24 C -0.210 4.210 25 C -0.058 4.058 26 N -0.151 5.151 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.243 0.757 37 H 0.226 0.774 38 H 0.250 0.750 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.193 -10.779 -5.142 15.701 hybrid contribution 1.547 1.131 -0.104 1.919 sum 11.741 -9.648 -5.246 16.077 Atomic orbital electron populations 1.69951 1.05912 1.26162 1.50615 1.24839 0.94569 0.98601 0.95199 0.86712 0.80030 0.84795 0.77386 1.20100 1.21368 1.21152 1.21535 0.92707 0.91954 1.50807 0.92924 1.19885 0.91205 0.85025 0.98132 1.62539 1.16815 1.47621 0.99182 1.21902 0.94070 0.99845 0.90873 1.21300 0.97864 1.03239 0.91246 1.21728 1.00086 1.03361 0.92136 1.21276 0.87959 0.77117 0.83694 1.90859 1.15322 1.41821 1.84479 1.44322 1.15839 1.66687 1.09396 1.16248 0.85325 0.78493 0.80764 1.43111 1.15050 1.75034 1.10025 1.91129 1.13557 1.51599 1.84329 1.20815 0.92684 1.01031 0.87753 1.21259 0.94174 0.88387 0.94475 1.21909 1.00607 0.98220 0.97898 1.21425 0.95293 0.98684 0.95841 1.22037 1.01990 0.94538 1.02420 1.22802 0.94830 0.96372 0.91846 1.67786 1.04786 1.34118 1.08362 0.93229 0.95613 0.93408 0.93105 0.93199 0.91289 0.90158 0.88147 0.88683 0.75682 0.77401 0.75010 0.91867 0.91665 0.85452 0.85742 0.85736 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 3 Si 0.88 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.53 -14.37 7.33 -34.44 -0.25 -14.62 16 8 H 0.05 1.40 5.95 -52.49 -0.31 1.08 16 9 C 0.18 4.73 4.71 -4.98 -0.02 4.71 16 10 N -0.54 -11.24 4.66 -237.52 -1.11 -12.35 16 11 C 0.06 1.08 4.80 -3.83 -0.02 1.06 16 12 C -0.10 -1.66 4.57 -26.73 -0.12 -1.78 16 13 C -0.13 -1.58 5.70 -27.88 -0.16 -1.73 16 14 C 0.51 7.37 7.77 -10.99 -0.09 7.28 16 15 O -0.46 -9.35 14.38 -18.21 -0.26 -9.62 16 16 N -0.69 -6.99 5.24 -15.78 -0.08 -7.07 16 17 C 0.69 8.48 8.78 -86.93 -0.76 7.71 16 18 N -0.86 -5.33 8.88 27.63 0.25 -5.08 16 19 O -0.53 -9.99 15.58 -18.47 -0.29 -10.27 16 20 C 0.11 2.02 5.09 -4.98 -0.03 2.00 16 21 C 0.16 3.00 5.70 -82.59 -0.47 2.53 16 22 C -0.17 -2.63 9.72 -39.44 -0.38 -3.01 16 23 C -0.09 -1.22 10.18 -39.28 -0.40 -1.62 16 24 C -0.19 -2.77 10.11 -39.45 -0.40 -3.17 16 25 C 0.10 1.77 11.18 -17.55 -0.20 1.57 16 26 N -0.44 -9.42 8.78 -9.47 -0.08 -9.50 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 29 H 0.05 1.37 6.19 -51.93 -0.32 1.05 16 30 H 0.05 0.97 6.17 -51.92 -0.32 0.65 16 31 H 0.05 0.72 7.81 -51.93 -0.41 0.31 16 32 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.08 1.68 6.68 -51.93 -0.35 1.34 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.41 1.92 8.71 -40.82 -0.36 1.57 16 37 H 0.40 0.88 8.84 -40.82 -0.36 0.52 16 38 H 0.42 2.23 8.93 -40.82 -0.36 1.87 16 39 H 0.06 1.35 6.57 -51.93 -0.34 1.01 16 40 H 0.07 1.02 7.76 -51.93 -0.40 0.62 16 41 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 44 H 0.15 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 367.95 15.07 5.54 5.54 Total: -1.00 -40.25 367.95 -9.68 -49.94 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.97 Total: 4.89 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -3.40 Total: 2.82 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.29 Total: -59.98 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.55 Total: -19.89 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -40.25 -9.68 -49.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178387596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.018 kcal (2) G-P(sol) polarization free energy of solvation -40.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds