Wall clock time and date at job start Fri Apr 10 2020 14:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00188 * 2 1 4 4 H 1.48494 * 109.47345 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46870 * 300.00087 * 3 2 1 6 6 H 1.48500 * 109.46803 * 59.99647 * 3 2 1 7 7 C 1.37884 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00272 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99385 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46937 * 184.71741 * 9 7 2 11 11 C 1.46896 * 111.00030 * 298.76469 * 10 9 7 12 12 C 1.52995 * 109.47491 * 287.82084 * 11 10 9 13 13 C 1.53001 * 109.47282 * 179.30071 * 12 11 10 14 14 C 1.50699 * 109.47354 * 179.97438 * 13 12 11 15 15 O 1.21238 * 119.99942 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00477 * 179.97438 * 14 13 12 17 17 C 1.34770 * 120.00423 * 180.02562 * 16 14 13 18 18 N 1.34774 * 120.00393 * 180.02562 * 17 16 14 19 19 O 1.21540 * 119.99845 * 359.97438 * 17 16 14 20 20 C 1.46893 * 110.99847 * 62.72243 * 10 9 7 21 21 C 1.50705 * 109.47361 * 66.04590 * 20 10 9 22 22 C 1.38223 * 119.61553 * 95.01984 * 21 20 10 23 23 C 1.38635 * 119.15571 * 179.97438 * 22 21 20 24 24 C 1.38663 * 118.42389 * 0.02562 * 23 22 21 25 25 C 1.38180 * 119.16425 * 359.97438 * 24 23 22 26 26 N 1.31853 * 119.61941 * 274.99975 * 21 20 10 27 27 H 0.97001 * 120.00403 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47107 * 64.72197 * 9 7 2 29 29 H 1.09004 * 109.47517 * 304.71883 * 9 7 2 30 30 H 1.09008 * 109.47084 * 47.82182 * 11 10 9 31 31 H 1.09004 * 109.46941 * 167.81975 * 11 10 9 32 32 H 1.08999 * 109.47349 * 299.30310 * 12 11 10 33 33 H 1.09001 * 109.47123 * 59.30297 * 12 11 10 34 34 H 1.09001 * 109.47640 * 300.00359 * 13 12 11 35 35 H 1.09001 * 109.46857 * 60.00063 * 13 12 11 36 36 H 0.97000 * 119.99335 * 0.02562 * 16 14 13 37 37 H 0.97005 * 119.99849 * 359.97438 * 18 17 16 38 38 H 0.96998 * 120.00474 * 179.97438 * 18 17 16 39 39 H 1.09001 * 109.47022 * 306.04693 * 20 10 9 40 40 H 1.09006 * 109.47378 * 186.04778 * 20 10 9 41 41 H 1.08003 * 120.42285 * 359.96138 * 22 21 20 42 42 H 1.08007 * 120.78252 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.42007 * 179.97438 * 24 23 22 44 44 H 1.08003 * 119.62279 * 180.27252 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2015 -3.6133 0.1151 11 6 3.1292 -3.6331 -1.0238 12 6 2.3859 -4.0938 -2.2792 13 6 3.3479 -4.0977 -3.4689 14 6 2.6160 -4.5521 -4.7053 15 8 1.4409 -4.8436 -4.6414 16 7 3.2673 -4.6336 -5.8824 17 6 2.6126 -5.0395 -6.9883 18 7 3.2641 -5.1214 -8.1652 19 8 1.4348 -5.3326 -6.9240 20 6 2.9319 -3.5534 1.3881 21 6 1.9734 -3.7812 2.5285 22 6 1.8236 -5.0519 3.0514 23 6 0.9396 -5.2505 4.1007 24 6 0.2359 -4.1590 4.5866 25 6 0.4380 -2.9181 4.0132 26 7 1.2877 -2.7660 3.0161 27 1 -0.4851 0.8400 -0.0004 28 1 0.6897 -2.5945 -0.9290 29 1 0.5621 -2.5210 0.8450 30 1 3.5282 -2.6315 -1.1848 31 1 3.9481 -4.3210 -0.8134 32 1 1.9975 -5.1002 -2.1227 33 1 1.5594 -3.4129 -2.4825 34 1 3.7364 -3.0914 -3.6254 35 1 4.1745 -4.7786 -3.2655 36 1 4.2074 -4.4000 -5.9336 37 1 4.2042 -4.8878 -8.2165 38 1 2.7930 -5.4139 -8.9611 39 1 3.3968 -2.5732 1.4945 40 1 3.7025 -4.3243 1.4016 41 1 2.3878 -5.8795 2.6476 42 1 0.8023 -6.2323 4.5295 43 1 -0.4614 -4.2771 5.4029 44 1 -0.1029 -2.0620 4.3888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178387596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:39 Heat of formation + Delta-G solvation = -56.854808 kcal Electronic energy + Delta-G solvation = -26466.159739 eV Core-core repulsion = 22610.496877 eV Total energy + Delta-G solvation = -3855.662862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.13571 -40.98493 -39.52888 -38.45865 -35.80774 -34.73937 -34.33797 -34.20314 -33.12184 -32.21635 -29.10558 -28.38210 -26.21749 -24.91790 -24.19091 -23.42673 -22.09595 -21.50510 -21.20672 -19.66153 -18.65464 -18.35236 -17.51644 -17.31661 -17.00434 -16.95197 -16.73501 -16.50047 -16.15003 -16.03631 -15.74833 -15.36627 -14.98802 -14.63778 -14.52309 -14.11440 -14.09988 -13.74382 -13.17521 -12.94412 -12.77692 -12.66710 -12.64815 -12.34724 -12.26631 -12.15636 -11.97649 -11.76644 -11.61364 -11.35887 -11.22864 -10.81010 -10.74289 -10.62246 -10.44975 -9.98713 -9.78431 -8.88559 -8.00873 -6.15693 0.35261 0.60291 1.05472 1.37200 1.39303 1.49264 1.54593 2.25534 2.44934 2.95267 3.26709 3.28570 3.56538 3.75439 3.77808 4.00294 4.13817 4.16676 4.26442 4.38119 4.43461 4.62487 4.67190 4.72678 4.81049 4.86272 4.96883 4.97572 5.07752 5.11260 5.35103 5.37671 5.42032 5.43063 5.51136 5.54722 5.58950 5.86283 5.91314 6.00891 6.17731 6.34738 6.56745 6.67370 7.02266 7.16473 7.41692 7.45094 7.52418 9.03343 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.003325 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.200245 B = 8420.291332 C =10190.846231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.259 1.259 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.205 3.795 10 N -0.542 5.542 11 C 0.063 3.937 12 C -0.092 4.092 13 C -0.118 4.118 14 C 0.514 3.486 15 O -0.530 6.530 16 N -0.672 5.672 17 C 0.687 3.313 18 N -0.827 5.827 19 O -0.605 6.605 20 C 0.109 3.891 21 C 0.119 3.881 22 C -0.162 4.162 23 C -0.081 4.081 24 C -0.176 4.176 25 C 0.068 3.932 26 N -0.498 5.498 27 H 0.256 0.744 28 H -0.016 1.016 29 H 0.014 0.986 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.023 0.977 34 H 0.123 0.877 35 H 0.149 0.851 36 H 0.437 0.563 37 H 0.422 0.578 38 H 0.425 0.575 39 H 0.033 0.967 40 H 0.109 0.891 41 H 0.157 0.843 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.059 -12.527 -4.914 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.188 4.188 3 Si 0.776 3.224 4 H -0.183 1.183 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.561 4.561 8 H 0.078 0.922 9 C 0.078 3.922 10 N -0.265 5.265 11 C -0.064 4.064 12 C -0.130 4.130 13 C -0.158 4.158 14 C 0.302 3.698 15 O -0.402 6.402 16 N -0.341 5.341 17 C 0.385 3.615 18 N -0.399 5.399 19 O -0.482 6.482 20 C -0.019 4.019 21 C -0.019 4.019 22 C -0.182 4.182 23 C -0.107 4.107 24 C -0.196 4.196 25 C -0.089 4.089 26 N -0.208 5.208 27 H 0.065 0.935 28 H 0.002 0.998 29 H 0.033 0.967 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.141 0.859 35 H 0.167 0.833 36 H 0.278 0.722 37 H 0.255 0.745 38 H 0.259 0.741 39 H 0.051 0.949 40 H 0.127 0.873 41 H 0.175 0.825 42 H 0.187 0.813 43 H 0.179 0.821 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.126 -12.406 -5.034 19.463 hybrid contribution 0.407 1.540 -0.150 1.599 sum 14.533 -10.867 -5.183 18.872 Atomic orbital electron populations 1.70116 1.07770 1.26848 1.52508 1.25710 0.95329 1.02479 0.95237 0.85638 0.79491 0.80209 0.77074 1.18268 1.20973 1.21485 1.21785 0.92962 0.92434 1.48943 0.92243 1.19346 0.91658 0.86723 0.94424 1.62414 1.17767 1.44894 1.01452 1.22020 0.94445 1.00278 0.89704 1.21140 0.97521 1.00853 0.93530 1.21689 0.99512 1.05980 0.88618 1.21771 0.87142 0.75567 0.85282 1.90848 1.18510 1.45219 1.85621 1.43934 1.17004 1.65357 1.07791 1.16569 0.84676 0.78021 0.82195 1.42818 1.16059 1.72842 1.08192 1.91098 1.16926 1.54706 1.85485 1.20900 0.93318 1.00864 0.86795 1.21429 0.95270 0.89729 0.95427 1.22211 1.00741 0.97391 0.97842 1.21956 0.93673 1.00308 0.94742 1.22389 1.01650 0.93217 1.02333 1.23023 0.95317 0.98316 0.92282 1.67616 1.06625 1.36352 1.10221 0.93484 0.99785 0.96740 0.94546 0.88342 0.92475 0.95770 0.85891 0.83344 0.72242 0.74544 0.74105 0.94878 0.87337 0.82544 0.81328 0.82114 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.07 13.29 21.45 0.28 -58.79 16 2 C 0.01 0.61 5.46 84.66 0.46 1.07 16 3 Si 0.95 45.66 29.54 68.60 2.03 47.68 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.52 -29.32 7.33 25.60 0.19 -29.13 16 8 H 0.06 3.19 5.95 -2.91 -0.02 3.18 16 9 C 0.21 11.28 4.71 85.56 0.40 11.68 16 10 N -0.54 -23.01 4.66 -905.36 -4.22 -27.23 16 11 C 0.06 2.15 4.80 86.30 0.41 2.56 16 12 C -0.09 -3.15 4.57 30.59 0.14 -3.01 16 13 C -0.12 -2.54 5.70 29.85 0.17 -2.37 16 14 C 0.51 14.52 7.77 87.66 0.68 15.20 16 15 O -0.53 -22.85 14.38 19.86 0.29 -22.57 16 16 N -0.67 -12.21 5.24 -440.53 -2.31 -14.52 16 17 C 0.69 16.18 8.78 179.06 1.57 17.75 16 18 N -0.83 -8.24 8.88 -184.80 -1.64 -9.88 16 19 O -0.61 -23.41 15.58 18.92 0.29 -23.12 16 20 C 0.11 4.14 5.09 85.56 0.44 4.57 16 21 C 0.12 4.61 5.70 42.55 0.24 4.86 16 22 C -0.16 -4.77 9.72 22.36 0.22 -4.55 16 23 C -0.08 -2.02 10.18 22.47 0.23 -1.80 16 24 C -0.18 -4.82 10.11 22.36 0.23 -4.60 16 25 C 0.07 2.48 11.18 84.67 0.95 3.43 16 26 N -0.50 -22.12 8.78 -183.89 -1.61 -23.73 16 27 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 28 H -0.02 -0.99 6.66 -2.39 -0.02 -1.01 16 29 H 0.01 0.89 6.19 -2.39 -0.01 0.88 16 30 H 0.04 1.35 6.17 -2.38 -0.01 1.34 16 31 H 0.10 2.42 7.81 -2.39 -0.02 2.40 16 32 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 33 H 0.02 1.08 6.68 -2.39 -0.02 1.06 16 34 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.44 2.41 8.71 -92.71 -0.81 1.60 16 37 H 0.42 0.28 8.84 -92.70 -0.82 -0.54 16 38 H 0.42 3.67 8.93 -92.71 -0.83 2.85 16 39 H 0.03 1.43 6.57 -2.39 -0.02 1.42 16 40 H 0.11 3.07 7.76 -2.38 -0.02 3.05 16 41 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 42 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 43 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 44 H 0.15 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -100.13 367.95 -1.95 -102.08 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -1.39 Total: 14.40 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 6.33 Total: 15.66 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -9.49 Total: -134.15 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: 0.58 Total: -45.68 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -100.13 -1.95 -102.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178387596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.226 kcal (2) G-P(sol) polarization free energy of solvation -100.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds