Wall clock time and date at job start Fri Apr 10 2020 14:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86799 * 119.99725 * 2 1 4 4 H 1.48501 * 109.47310 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47085 * 120.00032 * 3 2 1 6 6 H 1.48496 * 109.47208 * 239.99842 * 3 2 1 7 7 C 1.40023 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00083 * 1.94065 * 7 2 1 9 9 C 1.41337 * 119.99954 * 181.94977 * 7 2 1 10 10 C 1.40606 * 119.78789 * 186.97732 * 9 7 2 11 11 C 1.38312 * 119.13109 * 179.72529 * 10 9 7 12 12 C 1.38693 * 118.66800 * 0.53080 * 11 10 9 13 13 C 1.39642 * 119.49415 * 359.73337 * 12 11 10 14 14 N 1.39252 * 119.57234 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99932 * 18.81476 * 14 13 12 16 16 O 1.21573 * 120.00446 * 5.80746 * 15 14 13 17 17 N 1.34776 * 119.99823 * 185.80280 * 15 14 13 18 18 C 1.46497 * 120.00359 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47499 * 179.97438 * 18 17 15 20 20 N 1.46902 * 109.47159 * 180.02562 * 19 18 17 21 21 C 1.47014 * 110.99832 * 293.63857 * 20 19 18 22 22 C 1.53106 * 109.25883 * 177.60818 * 21 20 19 23 23 O 1.43015 * 109.25679 * 56.84591 * 22 21 20 24 24 C 1.43015 * 113.73955 * 301.33342 * 23 22 21 25 25 C 1.47009 * 111.00065 * 170.00192 * 20 19 18 26 26 N 1.31932 * 120.85262 * 359.97438 * 13 12 11 27 27 H 0.97000 * 119.99532 * 174.83213 * 1 2 3 28 28 H 1.08010 * 120.43348 * 359.97438 * 10 9 7 29 29 H 1.07999 * 120.66786 * 180.25843 * 11 10 9 30 30 H 1.08001 * 120.24836 * 179.74531 * 12 11 10 31 31 H 0.96999 * 120.00070 * 198.81994 * 14 13 12 32 32 H 0.96998 * 120.00065 * 0.02562 * 17 15 14 33 33 H 1.09004 * 109.47488 * 300.00729 * 18 17 15 34 34 H 1.09009 * 109.46692 * 59.99824 * 18 17 15 35 35 H 1.08996 * 109.47160 * 300.00302 * 19 18 17 36 36 H 1.09001 * 109.46928 * 60.00826 * 19 18 17 37 37 H 1.08998 * 109.51141 * 297.53972 * 21 20 19 38 38 H 1.08995 * 109.51046 * 57.67291 * 21 20 19 39 39 H 1.09003 * 109.50111 * 296.91300 * 22 21 20 40 40 H 1.09000 * 109.54085 * 176.80589 * 22 21 20 41 41 H 1.09003 * 109.50847 * 298.73623 * 24 23 22 42 42 H 1.09001 * 109.54468 * 178.62931 * 24 23 22 43 43 H 1.08993 * 109.50726 * 302.33011 * 25 20 19 44 44 H 1.09003 * 109.50439 * 62.41753 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0951 1.6965 1.2125 6 1 3.0951 1.6965 -1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 1.4681 -2.1477 -0.0326 9 6 3.4203 -1.2130 0.0411 10 6 4.1233 -2.4216 -0.1076 11 6 5.5058 -2.4054 -0.0704 12 6 6.1520 -1.1938 0.1243 13 6 5.3975 -0.0280 0.2712 14 7 6.0446 1.1893 0.4672 15 6 7.3466 1.3200 0.1444 16 8 7.9286 0.4108 -0.4147 17 7 8.0035 2.4588 0.4412 18 6 9.4188 2.6008 0.0909 19 6 9.9185 3.9771 0.5344 20 7 11.3376 4.1197 0.1825 21 6 12.1688 3.1867 0.9572 22 6 13.6287 3.3264 0.5175 23 8 14.0429 4.6853 0.6821 24 6 13.2552 5.6211 -0.0590 25 6 11.7916 5.5046 0.3748 26 7 4.0795 -0.0650 0.2266 27 1 -0.4849 -0.8367 -0.0757 28 1 3.5907 -3.3499 -0.2531 29 1 6.0707 -3.3186 -0.1861 30 1 7.2306 -1.1523 0.1617 31 1 5.5584 1.9432 0.8362 32 1 7.5393 3.1842 0.8876 33 1 9.9970 1.8248 0.5926 34 1 9.5376 2.5019 -0.9882 35 1 9.3404 4.7528 0.0323 36 1 9.7997 4.0764 1.6134 37 1 12.0846 3.4194 2.0187 38 1 11.8315 2.1655 0.7800 39 1 13.7218 3.0419 -0.5306 40 1 14.2570 2.6778 1.1279 41 1 13.3376 5.4034 -1.1239 42 1 13.6128 6.6325 0.1343 43 1 11.1789 6.1754 -0.2275 44 1 11.7006 5.7747 1.4269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881155551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:14 Heat of formation + Delta-G solvation = -56.265120 kcal Electronic energy + Delta-G solvation = -26216.595221 eV Core-core repulsion = 22360.957930 eV Total energy + Delta-G solvation = -3855.637292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.83713 -40.59142 -40.04978 -37.53350 -36.27399 -35.61202 -35.27426 -32.98093 -32.19171 -31.63170 -30.32164 -27.43914 -27.01968 -25.04155 -24.23185 -23.60054 -22.84452 -21.90144 -21.35126 -20.49810 -19.47312 -18.58167 -17.64040 -17.25653 -17.05836 -16.88585 -16.57942 -16.35717 -16.12434 -15.98436 -15.83884 -15.56493 -15.07631 -15.02476 -14.82487 -14.49247 -14.41129 -14.19222 -13.70881 -13.31446 -13.03191 -12.97537 -12.78600 -12.60609 -12.33750 -12.23922 -11.99527 -11.76578 -11.62225 -11.53057 -11.16610 -10.99404 -10.68144 -10.41097 -10.20869 -9.74097 -9.46688 -9.26381 -9.15558 -6.81059 0.59388 0.75370 1.31339 1.57083 1.70301 1.99496 2.06055 2.45279 2.63468 2.69892 2.95472 3.19411 3.57295 3.71052 3.93249 3.96699 4.05903 4.07860 4.20525 4.30534 4.34192 4.39840 4.46708 4.60221 4.63923 4.70594 4.73258 4.78730 4.81825 4.85096 4.89191 4.91949 5.02856 5.30852 5.36126 5.37619 5.44568 5.67492 5.77604 5.87281 5.88848 5.91671 6.04863 6.18233 6.41620 6.61774 6.83483 7.36404 7.51667 7.95769 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026046 B = 0.002410 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.759536 B =11617.483528 C =12577.945199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.012 3.988 3 Si 1.191 2.809 4 H -0.330 1.330 5 H -0.270 1.270 6 H -0.302 1.302 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.259 3.741 10 C -0.294 4.294 11 C -0.027 4.027 12 C -0.307 4.307 13 C 0.395 3.605 14 N -0.664 5.664 15 C 0.710 3.290 16 O -0.596 6.596 17 N -0.721 5.721 18 C 0.146 3.854 19 C 0.054 3.946 20 N -0.544 5.544 21 C 0.012 3.988 22 C 0.062 3.938 23 O -0.407 6.407 24 C 0.059 3.941 25 C 0.020 3.980 26 N -0.613 5.613 27 H 0.280 0.720 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.416 0.584 32 H 0.415 0.585 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.060 0.940 42 H 0.115 0.885 43 H 0.103 0.897 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.280 13.388 2.916 27.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.204 4.204 3 Si 1.024 2.976 4 H -0.264 1.264 5 H -0.198 1.198 6 H -0.231 1.231 7 C -0.540 4.540 8 H 0.086 0.914 9 C 0.134 3.866 10 C -0.317 4.317 11 C -0.051 4.051 12 C -0.331 4.331 13 C 0.163 3.837 14 N -0.312 5.312 15 C 0.410 3.590 16 O -0.474 6.474 17 N -0.379 5.379 18 C 0.021 3.979 19 C -0.074 4.074 20 N -0.270 5.270 21 C -0.116 4.116 22 C -0.015 4.015 23 O -0.326 6.326 24 C -0.018 4.018 25 C -0.107 4.107 26 N -0.339 5.339 27 H 0.091 0.909 28 H 0.133 0.867 29 H 0.161 0.839 30 H 0.167 0.833 31 H 0.253 0.747 32 H 0.251 0.749 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.078 0.922 42 H 0.133 0.867 43 H 0.121 0.879 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 24.325 14.816 2.216 28.568 hybrid contribution -0.901 -2.306 0.749 2.587 sum 23.424 12.510 2.965 26.720 Atomic orbital electron populations 1.70668 1.08432 1.32656 1.33577 1.28596 0.95641 1.08059 0.88106 0.81356 0.69825 0.67643 0.78738 1.26354 1.19765 1.23101 1.20701 0.90957 0.95931 1.46450 0.91368 1.18442 0.93409 0.87269 0.87510 1.21758 0.94920 0.98171 1.16816 1.21337 0.93456 0.97810 0.92468 1.21872 1.01644 0.91339 1.18254 1.18090 0.87977 0.85174 0.92436 1.42261 1.10080 1.13025 1.65853 1.15781 0.80402 0.83755 0.79091 1.90823 1.67852 1.40886 1.47886 1.44800 1.12281 1.16303 1.64473 1.21138 0.78314 0.97617 1.00796 1.22164 0.88861 0.96377 0.99988 1.62052 1.02296 1.05999 1.56632 1.22906 0.94548 0.98163 0.95964 1.22761 0.93734 0.83186 1.01827 1.87964 1.56904 1.17063 1.70643 1.22826 0.89099 0.93980 0.95852 1.22836 0.97674 0.89328 1.00912 1.65861 1.07801 1.29466 1.30779 0.90895 0.86722 0.83865 0.83306 0.74687 0.74853 0.91982 0.91836 0.88267 0.92802 0.93861 0.89067 0.92213 0.87141 0.92193 0.86687 0.87873 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.29 13.65 21.84 0.30 -45.99 16 2 C 0.01 0.67 5.52 85.29 0.47 1.14 16 3 Si 1.19 56.55 25.53 68.60 1.75 58.30 16 4 H -0.33 -15.27 7.11 99.48 0.71 -14.56 16 5 H -0.27 -11.96 6.70 99.48 0.67 -11.30 16 6 H -0.30 -14.62 7.10 99.48 0.71 -13.91 16 7 C -0.51 -28.47 9.58 23.47 0.22 -28.25 16 8 H 0.07 3.88 8.05 -2.91 -0.02 3.86 16 9 C 0.26 13.71 6.39 40.20 0.26 13.96 16 10 C -0.29 -13.93 9.83 22.87 0.22 -13.71 16 11 C -0.03 -1.12 10.15 22.40 0.23 -0.89 16 12 C -0.31 -13.34 8.83 22.72 0.20 -13.14 16 13 C 0.40 17.61 7.51 133.24 1.00 18.61 16 14 N -0.66 -23.16 5.42 -322.14 -1.75 -24.90 16 15 C 0.71 22.33 8.40 179.06 1.50 23.84 16 16 O -0.60 -23.04 13.14 -3.95 -0.05 -23.09 16 17 N -0.72 -14.56 5.56 -478.55 -2.66 -17.22 16 18 C 0.15 2.58 5.61 86.38 0.48 3.06 16 19 C 0.05 0.64 5.07 86.30 0.44 1.07 16 20 N -0.54 -7.14 4.73 -895.23 -4.23 -11.37 16 21 C 0.01 0.16 5.44 86.32 0.47 0.63 16 22 C 0.06 0.81 7.01 72.02 0.50 1.31 16 23 O -0.41 -6.49 10.83 -148.98 -1.61 -8.10 16 24 C 0.06 0.66 7.01 72.02 0.50 1.16 16 25 C 0.02 0.21 5.64 86.32 0.49 0.70 16 26 N -0.61 -30.60 4.58 -186.37 -0.85 -31.46 16 27 H 0.28 15.16 8.72 -92.71 -0.81 14.35 16 28 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 29 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 30 H 0.15 6.33 5.33 -3.16 -0.02 6.31 16 31 H 0.42 12.24 8.84 -92.71 -0.82 11.42 16 32 H 0.41 5.56 8.49 -92.71 -0.79 4.77 16 33 H 0.06 1.21 6.52 -2.38 -0.02 1.19 16 34 H 0.06 1.35 8.14 -2.38 -0.02 1.34 16 35 H 0.10 0.92 8.04 -2.39 -0.02 0.90 16 36 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 37 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.09 1.23 6.38 -2.39 -0.02 1.21 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 0.76 8.09 -2.39 -0.02 0.74 16 44 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -70.39 356.03 -2.76 -73.14 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -0.65 Total: 21.17 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 7.00 Total: 9.52 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -9.19 Total: -130.93 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.66 Total: -31.20 kcal Atomic # 14 Polarization: 56.55 SS G_CDS: 1.75 Total: 58.30 kcal Total: -70.39 -2.76 -73.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881155551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.877 kcal (2) G-P(sol) polarization free energy of solvation -70.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds