Wall clock time and date at job start Fri Apr 10 2020 14:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47232 * 274.34672 * 3 2 1 5 5 H 1.48503 * 109.47274 * 34.35294 * 3 2 1 6 6 H 1.48502 * 109.46681 * 154.34663 * 3 2 1 7 7 C 1.38815 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99757 * 162.60233 * 7 2 1 9 9 N 1.36944 * 120.00036 * 342.60061 * 7 2 1 10 10 C 1.46921 * 120.62882 * 332.30737 * 9 7 2 11 11 C 1.53194 * 108.76592 * 233.59439 * 10 9 7 12 12 C 1.53047 * 109.30995 * 305.34662 * 11 10 9 13 13 H 1.09000 * 109.45527 * 301.37161 * 12 11 10 14 14 N 1.46498 * 109.45589 * 181.39944 * 12 11 10 15 15 C 1.34772 * 120.00441 * 84.97630 * 14 12 11 16 16 O 1.21286 * 119.99952 * 359.97438 * 15 14 12 17 17 C 1.50699 * 120.00256 * 180.27166 * 15 14 12 18 18 C 1.53004 * 109.46841 * 179.72230 * 17 15 14 19 19 C 1.50704 * 109.46536 * 180.02562 * 18 17 15 20 20 C 1.38600 * 120.79813 * 269.71575 * 19 18 17 21 21 N 1.32338 * 119.10176 * 179.72277 * 20 19 18 22 22 C 1.31797 * 120.81774 * 0.56685 * 21 20 19 23 23 N 1.31790 * 121.75217 * 359.71029 * 22 21 20 24 24 C 1.32330 * 120.82432 * 359.97438 * 23 22 21 25 25 C 1.53039 * 109.52717 * 61.38226 * 12 11 10 26 26 H 1.09008 * 109.49504 * 58.60983 * 25 12 11 27 27 O 1.42896 * 109.49804 * 178.67635 * 25 12 11 28 28 C 1.46925 * 120.62971 * 152.28498 * 9 7 2 29 29 H 0.97006 * 120.00267 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.59203 * 353.37345 * 10 9 7 31 31 H 1.09003 * 109.58682 * 113.79802 * 10 9 7 32 32 H 1.08999 * 109.48778 * 185.40167 * 11 10 9 33 33 H 1.08996 * 109.50700 * 65.30006 * 11 10 9 34 34 H 0.97001 * 119.99714 * 264.97033 * 14 12 11 35 35 H 1.08998 * 109.47199 * 299.71921 * 17 15 14 36 36 H 1.08998 * 109.47012 * 59.72592 * 17 15 14 37 37 H 1.08999 * 109.47398 * 299.99510 * 18 17 15 38 38 H 1.08998 * 109.47021 * 60.00368 * 18 17 15 39 39 H 1.07996 * 120.44895 * 0.02562 * 20 19 18 40 40 H 1.07999 * 119.11805 * 179.68479 * 22 21 20 41 41 H 1.07997 * 120.45011 * 179.97438 * 24 23 22 42 42 H 0.96695 * 113.99964 * 180.02562 * 27 25 12 43 43 H 1.08995 * 109.58498 * 6.62724 * 28 9 7 44 44 H 1.09000 * 109.69943 * 246.27030 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4058 2.0995 -1.3960 5 1 1.4967 2.6244 0.7901 6 1 3.5907 1.4152 0.6062 7 6 2.0102 -1.2022 -0.0005 8 1 3.0531 -1.2235 -0.2802 9 7 1.3724 -2.3612 0.3536 10 6 0.2287 -2.3346 1.2755 11 6 0.5027 -3.3049 2.4288 12 6 0.8195 -4.6902 1.8603 13 1 -0.0202 -5.0360 1.2576 14 7 1.0493 -5.6286 2.9615 15 6 0.0060 -6.2491 3.5471 16 8 -1.1233 -6.0302 3.1626 17 6 0.2419 -7.2098 4.6839 18 6 -1.0987 -7.7655 5.1685 19 6 -0.8627 -8.7258 6.3057 20 6 -0.6662 -10.0765 6.0649 21 7 -0.4564 -10.8889 7.0882 22 6 -0.4441 -10.4296 8.3235 23 7 -0.6328 -9.1529 8.5907 24 6 -0.8425 -8.2805 7.6181 25 6 2.0745 -4.6103 0.9880 26 1 2.9090 -4.2411 1.5842 27 8 2.3874 -5.9098 0.4825 28 6 1.8186 -3.6547 -0.1816 29 1 -0.4851 0.8401 0.0004 30 1 0.0999 -1.3264 1.6691 31 1 -0.6740 -2.6407 0.7467 32 1 -0.3774 -3.3669 3.0688 33 1 1.3521 -2.9477 3.0110 34 1 1.9525 -5.8035 3.2692 35 1 0.8728 -8.0301 4.3414 36 1 0.7367 -6.6885 5.5033 37 1 -1.7296 -6.9453 5.5110 38 1 -1.5935 -8.2868 4.3490 39 1 -0.6792 -10.4600 5.0554 40 1 -0.2754 -11.1179 9.1385 41 1 -0.9968 -7.2357 7.8439 42 1 3.1736 -5.9342 -0.0798 43 1 2.7388 -3.5174 -0.7493 44 1 1.0473 -4.0696 -0.8305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099924399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:25 Heat of formation + Delta-G solvation = -24.215505 kcal Electronic energy + Delta-G solvation = -26411.774964 eV Core-core repulsion = 22557.527448 eV Total energy + Delta-G solvation = -3854.247516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37204 -39.84439 -38.06676 -35.46070 -35.08515 -34.30318 -34.03536 -32.05144 -30.83490 -29.81648 -28.56667 -26.07266 -24.93792 -24.82811 -22.72996 -22.29779 -21.62406 -20.18443 -19.45638 -17.97961 -17.94718 -17.39797 -16.90497 -16.59532 -15.95611 -15.46123 -15.12972 -14.87015 -14.66523 -14.04435 -14.00994 -13.92273 -13.84990 -13.56331 -13.48437 -13.11551 -12.76393 -12.52376 -12.31119 -12.08392 -11.61905 -11.44058 -11.19372 -11.16268 -11.12948 -10.90402 -10.71641 -10.36509 -10.31805 -10.00480 -9.93335 -9.79791 -9.69845 -9.56119 -9.40482 -8.79325 -8.49168 -6.81371 -5.88784 -3.32762 0.51270 0.71210 2.77461 3.25571 3.31689 3.38987 3.40583 3.46027 3.80854 3.87196 4.24358 4.31191 4.38244 4.46935 4.49155 4.70399 4.95388 4.96931 5.16204 5.25555 5.28383 5.32854 5.37295 5.44497 5.51154 5.72844 5.76478 5.80218 5.92412 6.04268 6.07112 6.27443 6.43830 6.48290 6.58709 6.61869 6.72621 6.82253 7.24584 7.56136 7.68849 7.69216 7.70842 7.86606 8.33609 8.39135 9.09206 9.71707 10.27357 11.19808 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.002303 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.834057 B =12157.648042 C =12674.059099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.162 3.838 13 H 0.087 0.913 14 N -0.716 5.716 15 C 0.511 3.489 16 O -0.542 6.542 17 C -0.135 4.135 18 C -0.057 4.057 19 C -0.183 4.183 20 C 0.150 3.850 21 N -0.519 5.519 22 C 0.283 3.717 23 N -0.519 5.519 24 C 0.150 3.850 25 C 0.080 3.920 26 H 0.056 0.944 27 O -0.572 6.572 28 C 0.121 3.879 29 H 0.256 0.744 30 H 0.093 0.907 31 H 0.024 0.976 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.396 0.604 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.169 0.831 40 H 0.195 0.805 41 H 0.169 0.831 42 H 0.374 0.626 43 H 0.060 0.940 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -17.264 12.206 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.186 4.186 12 C 0.058 3.942 13 H 0.105 0.895 14 N -0.366 5.366 15 C 0.296 3.704 16 O -0.420 6.420 17 C -0.176 4.176 18 C -0.096 4.096 19 C -0.187 4.187 20 C -0.016 4.016 21 N -0.232 5.232 22 C -0.004 4.004 23 N -0.232 5.232 24 C -0.016 4.016 25 C 0.019 3.981 26 H 0.074 0.926 27 O -0.376 6.376 28 C -0.007 4.007 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.229 0.771 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.186 0.814 40 H 0.211 0.789 41 H 0.186 0.814 42 H 0.220 0.780 43 H 0.078 0.922 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.080 -17.758 13.019 22.045 hybrid contribution 1.292 1.535 -0.877 2.190 sum 2.371 -16.223 12.142 20.402 Atomic orbital electron populations 1.70037 1.05305 1.25767 1.53095 1.25074 0.95302 0.98562 1.00502 0.86272 0.79180 0.83542 0.77697 1.21354 1.21439 1.20389 1.19147 0.92704 0.84636 1.42432 0.91551 1.44048 1.35962 1.01030 1.50167 1.20835 0.88699 0.98416 0.87596 1.22597 1.00953 0.94314 1.00761 1.21004 0.97485 0.89338 0.86341 0.89452 1.46113 1.09246 1.44875 1.36324 1.20462 0.85178 0.81098 0.83638 1.90725 1.22575 1.64235 1.64419 1.21652 0.99031 0.99231 0.97651 1.20226 0.96815 0.97557 0.95034 1.21785 1.02248 0.97102 0.97521 1.23241 0.90131 0.89334 0.98907 1.68448 1.13927 1.40138 1.00716 1.24978 0.91530 0.90547 0.93386 1.68442 1.13038 1.04209 1.37501 1.23247 0.90388 1.00064 0.87890 1.22777 0.96011 0.83088 0.96241 0.92637 1.86471 1.50678 1.30310 1.70143 1.21520 0.98799 0.87449 0.92943 0.93415 0.88856 0.95806 0.91941 0.92390 0.77081 0.88916 0.88930 0.89269 0.89310 0.81435 0.78875 0.81406 0.77977 0.92193 0.95336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 11.19 55.49 0.62 -24.87 16 2 C 0.00 0.13 4.91 -17.43 -0.09 0.05 16 3 Si 0.90 20.98 29.59 -169.99 -5.03 15.95 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.26 -6.83 9.59 -15.06 -0.14 -6.97 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.10 2.99 -172.33 -0.52 -14.62 16 10 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 11 C -0.15 -2.76 5.65 -26.61 -0.15 -2.91 16 12 C 0.16 2.78 2.12 -67.89 -0.14 2.63 16 13 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 14 N -0.72 -9.68 4.92 -53.76 -0.26 -9.95 16 15 C 0.51 6.82 7.79 -10.99 -0.09 6.74 16 16 O -0.54 -9.49 15.64 5.55 0.09 -9.40 16 17 C -0.14 -1.15 5.68 -27.88 -0.16 -1.31 16 18 C -0.06 -0.47 4.68 -27.88 -0.13 -0.60 16 19 C -0.18 -1.43 5.17 -104.35 -0.54 -1.97 16 20 C 0.15 1.22 11.01 -17.20 -0.19 1.03 16 21 N -0.52 -4.87 10.44 -14.58 -0.15 -5.02 16 22 C 0.28 2.43 12.29 -92.16 -1.13 1.30 16 23 N -0.52 -4.90 10.44 -14.58 -0.15 -5.05 16 24 C 0.15 1.23 11.01 -17.20 -0.19 1.04 16 25 C 0.08 1.30 3.14 -26.61 -0.08 1.22 16 26 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 27 O -0.57 -8.11 13.16 -35.23 -0.46 -8.57 16 28 C 0.12 2.39 6.14 -3.71 -0.02 2.36 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.40 4.32 8.60 -40.82 -0.35 3.97 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.79 8.06 -51.93 -0.42 0.37 16 38 H 0.09 0.78 8.06 -51.93 -0.42 0.36 16 39 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.19 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.37 3.76 9.08 45.56 0.41 4.18 16 43 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -33.38 366.90 -9.09 -42.47 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.67 Total: 6.97 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -3.07 Total: 6.57 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.46 Total: -59.51 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.38 Total: -17.97 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.38 -9.09 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099924399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.251 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds