Wall clock time and date at job start Fri Apr 10 2020 14:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47232 * 274.34672 * 3 2 1 5 5 H 1.48503 * 109.47274 * 34.35294 * 3 2 1 6 6 H 1.48502 * 109.46681 * 154.34663 * 3 2 1 7 7 C 1.38815 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99757 * 162.60233 * 7 2 1 9 9 N 1.36944 * 120.00036 * 342.60061 * 7 2 1 10 10 C 1.46921 * 120.62882 * 332.30737 * 9 7 2 11 11 C 1.53194 * 108.76592 * 233.59439 * 10 9 7 12 12 C 1.53047 * 109.30995 * 305.34662 * 11 10 9 13 13 H 1.09000 * 109.45527 * 301.37161 * 12 11 10 14 14 N 1.46498 * 109.45589 * 181.39944 * 12 11 10 15 15 C 1.34772 * 120.00441 * 84.97630 * 14 12 11 16 16 O 1.21286 * 119.99952 * 359.97438 * 15 14 12 17 17 C 1.50699 * 120.00256 * 180.27166 * 15 14 12 18 18 C 1.53004 * 109.46841 * 179.72230 * 17 15 14 19 19 C 1.50704 * 109.46536 * 180.02562 * 18 17 15 20 20 C 1.38600 * 120.79813 * 269.71575 * 19 18 17 21 21 N 1.32338 * 119.10176 * 179.72277 * 20 19 18 22 22 C 1.31797 * 120.81774 * 0.56685 * 21 20 19 23 23 N 1.31790 * 121.75217 * 359.71029 * 22 21 20 24 24 C 1.32330 * 120.82432 * 359.97438 * 23 22 21 25 25 C 1.53039 * 109.52717 * 61.38226 * 12 11 10 26 26 H 1.09008 * 109.49504 * 58.60983 * 25 12 11 27 27 O 1.42896 * 109.49804 * 178.67635 * 25 12 11 28 28 C 1.46925 * 120.62971 * 152.28498 * 9 7 2 29 29 H 0.97006 * 120.00267 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.59203 * 353.37345 * 10 9 7 31 31 H 1.09003 * 109.58682 * 113.79802 * 10 9 7 32 32 H 1.08999 * 109.48778 * 185.40167 * 11 10 9 33 33 H 1.08996 * 109.50700 * 65.30006 * 11 10 9 34 34 H 0.97001 * 119.99714 * 264.97033 * 14 12 11 35 35 H 1.08998 * 109.47199 * 299.71921 * 17 15 14 36 36 H 1.08998 * 109.47012 * 59.72592 * 17 15 14 37 37 H 1.08999 * 109.47398 * 299.99510 * 18 17 15 38 38 H 1.08998 * 109.47021 * 60.00368 * 18 17 15 39 39 H 1.07996 * 120.44895 * 0.02562 * 20 19 18 40 40 H 1.07999 * 119.11805 * 179.68479 * 22 21 20 41 41 H 1.07997 * 120.45011 * 179.97438 * 24 23 22 42 42 H 0.96695 * 113.99964 * 180.02562 * 27 25 12 43 43 H 1.08995 * 109.58498 * 6.62724 * 28 9 7 44 44 H 1.09000 * 109.69943 * 246.27030 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4058 2.0995 -1.3960 5 1 1.4967 2.6244 0.7901 6 1 3.5907 1.4152 0.6062 7 6 2.0102 -1.2022 -0.0005 8 1 3.0531 -1.2235 -0.2802 9 7 1.3724 -2.3612 0.3536 10 6 0.2287 -2.3346 1.2755 11 6 0.5027 -3.3049 2.4288 12 6 0.8195 -4.6902 1.8603 13 1 -0.0202 -5.0360 1.2576 14 7 1.0493 -5.6286 2.9615 15 6 0.0060 -6.2491 3.5471 16 8 -1.1233 -6.0302 3.1626 17 6 0.2419 -7.2098 4.6839 18 6 -1.0987 -7.7655 5.1685 19 6 -0.8627 -8.7258 6.3057 20 6 -0.6662 -10.0765 6.0649 21 7 -0.4564 -10.8889 7.0882 22 6 -0.4441 -10.4296 8.3235 23 7 -0.6328 -9.1529 8.5907 24 6 -0.8425 -8.2805 7.6181 25 6 2.0745 -4.6103 0.9880 26 1 2.9090 -4.2411 1.5842 27 8 2.3874 -5.9098 0.4825 28 6 1.8186 -3.6547 -0.1816 29 1 -0.4851 0.8401 0.0004 30 1 0.0999 -1.3264 1.6691 31 1 -0.6740 -2.6407 0.7467 32 1 -0.3774 -3.3669 3.0688 33 1 1.3521 -2.9477 3.0110 34 1 1.9525 -5.8035 3.2692 35 1 0.8728 -8.0301 4.3414 36 1 0.7367 -6.6885 5.5033 37 1 -1.7296 -6.9453 5.5110 38 1 -1.5935 -8.2868 4.3490 39 1 -0.6792 -10.4600 5.0554 40 1 -0.2754 -11.1179 9.1385 41 1 -0.9968 -7.2357 7.8439 42 1 3.1736 -5.9342 -0.0798 43 1 2.7388 -3.5174 -0.7493 44 1 1.0473 -4.0696 -0.8305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099924399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:24 Heat of formation + Delta-G solvation = -49.097100 kcal Electronic energy + Delta-G solvation = -26412.853911 eV Core-core repulsion = 22557.527448 eV Total energy + Delta-G solvation = -3855.326463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.99196 -41.04349 -39.44292 -36.96863 -35.93830 -35.53899 -34.65633 -33.78614 -32.04885 -31.07263 -30.08441 -27.34208 -26.13789 -25.53953 -24.11056 -23.66870 -22.80365 -21.40808 -20.90322 -18.95667 -18.57335 -18.53217 -18.05412 -18.00401 -17.33260 -16.72084 -16.39139 -15.89281 -15.68873 -15.57559 -15.24855 -15.01547 -14.72483 -14.56818 -14.48970 -14.32766 -14.17330 -13.82151 -13.51150 -13.27088 -13.23885 -12.97060 -12.72129 -12.36819 -12.12438 -12.09931 -12.05315 -11.87783 -11.81943 -11.80799 -11.37014 -11.08980 -10.84147 -10.56547 -10.31232 -10.18717 -9.97401 -8.76927 -7.90908 -5.38031 -0.09065 0.10629 1.47682 1.49636 1.59388 1.72829 2.22074 2.48915 2.81156 3.13743 3.25929 3.27888 3.30645 3.63024 3.64139 3.68052 3.85290 3.89125 3.99105 4.08000 4.23420 4.27242 4.36015 4.40295 4.54087 4.55900 4.66908 4.74240 4.80168 4.85825 4.98427 5.03939 5.12327 5.13338 5.16417 5.38311 5.45923 5.55285 5.60358 5.65992 5.98762 6.33415 6.64757 6.88679 7.09330 7.10337 7.35947 7.77874 8.30192 9.16376 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.002303 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.834057 B =12157.648042 C =12674.059099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.264 4.264 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.128 4.128 12 C 0.170 3.830 13 H 0.053 0.947 14 N -0.706 5.706 15 C 0.507 3.493 16 O -0.588 6.588 17 C -0.122 4.122 18 C -0.050 4.050 19 C -0.177 4.177 20 C 0.145 3.855 21 N -0.538 5.538 22 C 0.277 3.723 23 N -0.539 5.539 24 C 0.145 3.855 25 C 0.102 3.898 26 H 0.073 0.927 27 O -0.570 6.570 28 C 0.116 3.884 29 H 0.251 0.749 30 H 0.062 0.938 31 H -0.010 1.010 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.414 0.586 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.187 0.813 40 H 0.217 0.783 41 H 0.186 0.814 42 H 0.396 0.604 43 H 0.074 0.926 44 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.795 -18.632 13.408 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.394 4.394 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.052 3.948 11 C -0.168 4.168 12 C 0.064 3.936 13 H 0.072 0.928 14 N -0.357 5.357 15 C 0.295 3.705 16 O -0.469 6.469 17 C -0.161 4.161 18 C -0.089 4.089 19 C -0.181 4.181 20 C -0.020 4.020 21 N -0.252 5.252 22 C -0.010 4.010 23 N -0.252 5.252 24 C -0.021 4.021 25 C 0.041 3.959 26 H 0.091 0.909 27 O -0.377 6.377 28 C -0.011 4.011 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.008 0.992 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.250 0.750 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.203 0.797 40 H 0.233 0.767 41 H 0.203 0.797 42 H 0.246 0.754 43 H 0.092 0.908 44 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 3.563 -19.177 14.228 24.143 hybrid contribution 0.515 1.874 -1.317 2.348 sum 4.078 -17.302 12.911 21.970 Atomic orbital electron populations 1.70208 1.06926 1.26046 1.55032 1.25884 0.95995 1.01853 1.01015 0.85228 0.78323 0.79320 0.77345 1.21387 1.22127 1.18855 1.19556 0.93226 0.85527 1.41117 0.90578 1.44265 1.35762 1.02101 1.50728 1.20563 0.87732 0.97813 0.88691 1.22304 1.01219 0.94502 0.98766 1.20577 0.96927 0.88772 0.87301 0.92837 1.45906 1.10487 1.44033 1.35277 1.21338 0.84180 0.80967 0.84009 1.90717 1.24495 1.65740 1.65916 1.21640 0.99647 0.98714 0.96149 1.20106 0.96617 0.97293 0.94901 1.21639 1.02506 0.96855 0.97128 1.23600 0.89399 0.89445 0.99574 1.68509 1.14807 1.40636 1.01217 1.25468 0.90832 0.90801 0.93909 1.68500 1.13936 1.04719 1.38052 1.23592 0.89739 1.00831 0.87915 1.22294 0.95901 0.83127 0.94549 0.90876 1.86443 1.52216 1.28420 1.70652 1.21700 0.98570 0.86362 0.94426 0.94030 0.91957 0.99229 0.92289 0.91191 0.74989 0.86551 0.86514 0.90043 0.90000 0.79650 0.76715 0.79740 0.75446 0.90768 0.97204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.05 11.19 21.65 0.24 -54.81 16 2 C -0.05 -2.83 4.91 84.86 0.42 -2.41 16 3 Si 0.97 43.42 29.59 68.60 2.03 45.45 16 4 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.26 -13.88 9.59 84.03 0.81 -13.08 16 8 H 0.08 3.78 7.89 -2.91 -0.02 3.76 16 9 N -0.60 -29.26 2.99 -699.12 -2.09 -31.35 16 10 C 0.18 8.68 5.31 86.36 0.46 9.14 16 11 C -0.13 -4.84 5.65 30.67 0.17 -4.66 16 12 C 0.17 5.68 2.12 45.02 0.10 5.78 16 13 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 14 N -0.71 -17.49 4.92 -442.40 -2.18 -19.66 16 15 C 0.51 12.67 7.79 87.66 0.68 13.35 16 16 O -0.59 -20.55 15.64 -3.05 -0.05 -20.59 16 17 C -0.12 -1.70 5.68 29.85 0.17 -1.53 16 18 C -0.05 -0.73 4.68 29.85 0.14 -0.59 16 19 C -0.18 -2.41 5.17 -19.69 -0.10 -2.51 16 20 C 0.15 2.07 11.01 84.70 0.93 3.00 16 21 N -0.54 -9.17 10.44 -200.05 -2.09 -11.26 16 22 C 0.28 4.32 12.29 180.88 2.22 6.54 16 23 N -0.54 -9.29 10.44 -200.05 -2.09 -11.37 16 24 C 0.14 2.09 11.01 84.70 0.93 3.02 16 25 C 0.10 3.12 3.14 30.67 0.10 3.22 16 26 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 27 O -0.57 -14.41 13.16 -148.98 -1.96 -16.37 16 28 C 0.12 4.52 6.14 86.36 0.53 5.05 16 29 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 30 H 0.06 3.40 6.04 -2.39 -0.01 3.39 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.41 7.47 8.60 -92.71 -0.80 6.67 16 35 H 0.12 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.34 8.06 -2.39 -0.02 1.32 16 38 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 39 H 0.19 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.22 2.03 8.06 -2.91 -0.02 2.00 16 41 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.40 6.46 9.08 -74.06 -0.67 5.79 16 43 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 44 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -74.71 366.90 -1.07 -75.77 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.44 Total: 19.91 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 7.55 Total: 24.30 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -8.20 Total: -128.46 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -2.01 Total: -36.97 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -74.71 -1.07 -75.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099924399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.677 kcal (2) G-P(sol) polarization free energy of solvation -74.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds