Wall clock time and date at job start Fri Apr 10 2020 14:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99663 * 2 1 4 4 H 1.48497 * 109.47171 * 270.00200 * 3 2 1 5 5 H 1.48494 * 109.47439 * 30.00771 * 3 2 1 6 6 H 1.48505 * 109.46760 * 150.00697 * 3 2 1 7 7 C 1.38810 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00179 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00181 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00144 * 174.25789 * 9 7 2 11 11 C 1.52995 * 109.47223 * 62.84412 * 10 9 7 12 12 N 1.46501 * 109.47531 * 54.62574 * 11 10 9 13 13 C 1.34774 * 120.00400 * 176.62627 * 12 11 10 14 14 O 1.21591 * 119.99684 * 0.02562 * 13 12 11 15 15 C 1.47531 * 120.00268 * 179.97438 * 13 12 11 16 16 C 1.39806 * 120.97497 * 359.97438 * 15 13 12 17 17 N 1.32195 * 118.97492 * 180.02562 * 16 15 13 18 18 C 1.31935 * 121.14180 * 359.97438 * 17 16 15 19 19 N 1.31725 * 122.19745 * 0.02562 * 18 17 16 20 20 C 1.32773 * 120.87072 * 359.97438 * 19 18 17 21 21 O 1.35287 * 120.61223 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.47223 * 182.84395 * 10 9 7 23 23 C 1.52998 * 109.47515 * 59.99786 * 22 10 9 24 24 C 1.52996 * 109.46973 * 60.00048 * 23 22 10 25 25 C 1.53005 * 109.47447 * 300.00154 * 24 23 22 26 26 C 1.52997 * 109.47323 * 302.83975 * 10 9 7 27 27 H 0.97003 * 120.00362 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99646 * 354.25822 * 9 7 2 29 29 H 1.08997 * 109.46904 * 294.62476 * 11 10 9 30 30 H 1.08997 * 109.47298 * 174.62998 * 11 10 9 31 31 H 0.96999 * 119.99740 * 356.62796 * 12 11 10 32 32 H 1.07993 * 120.51490 * 0.04110 * 16 15 13 33 33 H 1.07997 * 118.90081 * 179.97438 * 18 17 16 34 34 H 0.96699 * 113.99732 * 90.00044 * 21 20 19 35 35 H 1.09003 * 109.47603 * 180.02562 * 22 10 9 36 36 H 1.08999 * 109.47154 * 299.99964 * 22 10 9 37 37 H 1.09003 * 109.47001 * 300.00755 * 23 22 10 38 38 H 1.08999 * 109.47446 * 180.02562 * 23 22 10 39 39 H 1.08998 * 109.47211 * 180.02562 * 24 23 22 40 40 H 1.09000 * 109.47155 * 59.99934 * 24 23 22 41 41 H 1.08997 * 109.46898 * 300.00531 * 25 24 23 42 42 H 1.09000 * 109.47173 * 179.97438 * 25 24 23 43 43 H 1.09007 * 109.46918 * 60.00023 * 26 10 9 44 44 H 1.09000 * 109.47467 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0526 -3.6535 -0.1280 11 6 2.9861 -3.8285 1.0714 12 7 2.2148 -3.7123 2.3116 13 6 2.8194 -3.9006 3.5013 14 8 4.0050 -4.1665 3.5454 15 6 2.0429 -3.7829 4.7502 16 6 0.6791 -3.4765 4.7234 17 7 0.0217 -3.3802 5.8662 18 6 0.6305 -3.5685 7.0215 19 7 1.9129 -3.8590 7.0999 20 6 2.6532 -3.9759 6.0039 21 8 3.9698 -4.2750 6.0905 22 6 1.0549 -4.8127 -0.1712 23 6 0.1213 -4.6378 -1.3707 24 6 0.9447 -4.6252 -2.6602 25 6 1.9424 -3.4660 -2.6171 26 6 2.8759 -3.6411 -1.4175 27 1 -0.4851 0.8400 0.0004 28 1 0.3593 -2.3902 0.0839 29 1 3.7556 -3.0570 1.0485 30 1 3.4554 -4.8112 1.0262 31 1 1.2691 -3.4998 2.2764 32 1 0.1704 -3.3211 3.7835 33 1 0.0585 -3.4806 7.9333 34 1 4.1594 -5.2232 6.0771 35 1 1.5958 -5.7544 -0.2656 36 1 0.4683 -4.8216 0.7474 37 1 -0.4195 -3.6961 -1.2758 38 1 -0.5897 -5.4633 -1.4012 39 1 0.2797 -4.5002 -3.5147 40 1 1.4856 -5.5668 -2.7550 41 1 1.4015 -2.5245 -2.5221 42 1 2.5292 -3.4574 -3.5356 43 1 3.5867 -2.8152 -1.3868 44 1 3.4171 -4.5825 -1.5122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115587759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:59 Heat of formation + Delta-G solvation = -44.833759 kcal Electronic energy + Delta-G solvation = -27972.413264 eV Core-core repulsion = 24117.271673 eV Total energy + Delta-G solvation = -3855.141591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.43208 -40.78390 -39.68367 -38.67860 -35.90222 -35.13626 -34.49070 -33.21987 -32.36923 -31.52329 -30.21637 -27.29740 -25.92498 -25.67781 -25.08477 -23.45041 -22.07680 -21.59351 -20.35716 -19.84032 -19.14965 -19.06281 -18.68982 -17.56945 -16.92075 -16.52306 -16.31469 -16.02400 -15.87071 -15.52515 -15.40609 -15.04732 -14.95715 -14.90198 -14.51204 -14.28918 -13.55222 -13.39110 -13.32857 -13.23374 -12.88853 -12.82581 -12.58681 -12.50825 -12.43931 -12.05494 -11.85549 -11.80757 -11.66432 -11.29675 -11.08255 -10.97194 -10.81298 -10.68773 -10.68371 -10.51260 -9.93351 -8.89667 -7.87631 -5.11170 -0.73189 -0.25547 1.43140 1.47289 1.51008 1.76059 2.07887 2.25744 2.58303 2.63152 2.99355 3.19205 3.45629 3.60243 3.72132 3.83976 3.94614 4.03843 4.15748 4.19933 4.38737 4.42287 4.50990 4.69689 4.77409 4.79528 4.84463 4.93046 4.99056 5.05993 5.09903 5.20700 5.25406 5.42386 5.51338 5.53926 5.57373 5.62457 5.63642 5.69853 5.83988 6.35846 6.41962 6.53168 6.82210 7.15816 7.45370 8.18009 8.44015 9.34488 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011119 B = 0.004632 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.715608 B = 6043.945470 C = 7141.183430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.060 4.060 3 Si 0.940 3.060 4 H -0.293 1.293 5 H -0.302 1.302 6 H -0.285 1.285 7 C -0.204 4.204 8 H 0.061 0.939 9 N -0.708 5.708 10 C 0.188 3.812 11 C 0.122 3.878 12 N -0.688 5.688 13 C 0.562 3.438 14 O -0.563 6.563 15 C -0.269 4.269 16 C 0.208 3.792 17 N -0.536 5.536 18 C 0.342 3.658 19 N -0.556 5.556 20 C 0.411 3.589 21 O -0.468 6.468 22 C -0.108 4.108 23 C -0.113 4.113 24 C -0.108 4.108 25 C -0.106 4.106 26 C -0.113 4.113 27 H 0.246 0.754 28 H 0.378 0.622 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.406 0.594 32 H 0.188 0.812 33 H 0.246 0.754 34 H 0.428 0.572 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.055 0.945 43 H 0.038 0.962 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 -14.837 5.821 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.253 4.253 3 Si 0.772 3.228 4 H -0.221 1.221 5 H -0.229 1.229 6 H -0.211 1.211 7 C -0.337 4.337 8 H 0.079 0.921 9 N -0.349 5.349 10 C 0.098 3.902 11 C -0.004 4.004 12 N -0.338 5.338 13 C 0.347 3.653 14 O -0.444 6.444 15 C -0.278 4.278 16 C 0.041 3.959 17 N -0.252 5.252 18 C 0.056 3.944 19 N -0.281 5.281 20 C 0.223 3.777 21 O -0.279 6.279 22 C -0.146 4.146 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.153 4.153 27 H 0.055 0.945 28 H 0.212 0.788 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.243 0.757 32 H 0.205 0.795 33 H 0.262 0.738 34 H 0.292 0.708 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.034 -14.264 6.637 15.733 hybrid contribution 0.416 1.358 -0.837 1.648 sum 0.382 -12.907 5.800 14.155 Atomic orbital electron populations 1.69724 1.05608 1.25208 1.60275 1.25084 0.95902 0.99313 1.04982 0.85646 0.77768 0.82379 0.76983 1.22081 1.22873 1.21052 1.19166 0.90659 0.84974 1.38879 0.92066 1.42479 1.05813 0.99885 1.86740 1.20051 0.91808 0.86934 0.91452 1.21817 0.94451 1.00089 0.84005 1.45634 1.14015 1.69206 1.04967 1.17800 0.86520 0.77562 0.83408 1.90761 1.15840 1.50264 1.87506 1.21978 0.97270 1.13237 0.95329 1.23776 0.88839 0.84763 0.98491 1.68543 1.40587 1.16913 0.99115 1.25915 0.86202 0.84965 0.97340 1.68232 1.08967 1.18551 1.32362 1.19613 0.84488 0.87017 0.86620 1.84607 1.15931 1.32316 1.95038 1.21676 0.97098 0.97203 0.98585 1.21438 0.97760 1.01312 0.94543 1.21447 0.97502 0.98235 0.97327 1.21303 0.97446 0.98859 0.96816 1.21772 0.97698 1.00615 0.95212 0.94476 0.78771 0.94714 0.90774 0.75704 0.79529 0.73826 0.70771 0.89673 0.91748 0.93745 0.90701 0.92461 0.90762 0.94093 0.92660 0.94332 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.71 13.07 21.65 0.28 -53.43 16 2 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 3 Si 0.94 45.44 29.55 68.60 2.03 47.47 16 4 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 5 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 6 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.20 -10.06 8.70 84.03 0.73 -9.33 16 8 H 0.06 3.10 6.77 -2.91 -0.02 3.08 16 9 N -0.71 -29.03 3.40 -303.37 -1.03 -30.06 16 10 C 0.19 6.00 0.41 3.60 0.00 6.01 16 11 C 0.12 4.01 4.37 86.38 0.38 4.39 16 12 N -0.69 -21.45 5.05 -466.29 -2.35 -23.81 16 13 C 0.56 18.37 7.78 86.69 0.67 19.04 16 14 O -0.56 -21.46 15.32 16.22 0.25 -21.21 16 15 C -0.27 -7.58 5.92 -19.83 -0.12 -7.69 16 16 C 0.21 5.18 10.81 85.02 0.92 6.10 16 17 N -0.54 -12.57 10.42 -199.13 -2.07 -14.64 16 18 C 0.34 6.85 12.27 180.86 2.22 9.06 16 19 N -0.56 -13.56 10.45 -312.04 -3.26 -16.82 16 20 C 0.41 11.27 7.85 85.17 0.67 11.94 16 21 O -0.47 -12.57 11.81 -65.51 -0.77 -13.34 16 22 C -0.11 -2.71 4.65 30.59 0.14 -2.57 16 23 C -0.11 -2.91 5.75 30.59 0.18 -2.73 16 24 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 25 C -0.11 -3.32 5.77 30.60 0.18 -3.15 16 26 C -0.11 -3.55 4.52 30.59 0.14 -3.42 16 27 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.38 16.73 6.63 -92.70 -0.61 16.11 16 29 H 0.03 1.37 7.50 -2.39 -0.02 1.35 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.41 11.92 5.52 -92.71 -0.51 11.40 16 32 H 0.19 4.16 6.53 -2.91 -0.02 4.14 16 33 H 0.25 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.43 7.32 9.06 -74.06 -0.67 6.65 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.53 7.28 -2.39 -0.02 1.52 16 37 H 0.04 1.43 6.92 -2.39 -0.02 1.42 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.04 1.63 7.60 -2.39 -0.02 1.61 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.04 1.39 7.23 -2.38 -0.02 1.38 16 44 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -67.01 354.99 -0.92 -67.93 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.73 Total: 35.51 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 6.75 Total: 22.41 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -8.44 Total: -138.75 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.53 Total: -34.56 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -67.01 -0.92 -67.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115587759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.092 kcal (2) G-P(sol) polarization free energy of solvation -67.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds