Wall clock time and date at job start Fri Apr 10 2020 14:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00159 * 2 1 4 4 H 1.48501 * 109.47439 * 240.00019 * 3 2 1 5 5 H 1.48505 * 109.46721 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47213 * 119.99845 * 3 2 1 7 7 C 1.38818 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99610 * 195.46951 * 7 2 1 9 9 N 1.36931 * 120.00044 * 15.46904 * 7 2 1 10 10 C 1.47515 * 118.75725 * 26.09272 * 9 7 2 11 11 C 1.53570 * 111.02514 * 138.37308 * 10 9 7 12 12 C 1.51534 * 109.58402 * 320.02911 * 11 10 9 13 13 O 1.42155 * 108.76580 * 91.39835 * 12 11 10 14 14 C 1.38013 * 119.43574 * 272.77569 * 13 12 11 15 15 H 1.09003 * 109.47043 * 303.42601 * 14 13 12 16 16 C 1.52992 * 109.47032 * 183.42878 * 14 13 12 17 17 N 1.46499 * 109.47167 * 65.00325 * 16 14 13 18 18 C 1.34775 * 120.00097 * 180.02562 * 17 16 14 19 19 O 1.21276 * 120.00055 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.99870 * 179.97438 * 18 17 16 21 21 C 1.50701 * 109.47072 * 179.97438 * 20 18 17 22 22 C 1.38599 * 120.79804 * 90.00095 * 21 20 18 23 23 N 1.32330 * 119.10332 * 179.97438 * 22 21 20 24 24 C 1.31798 * 120.82084 * 0.02562 * 23 22 21 25 25 N 1.31799 * 121.75497 * 0.02562 * 24 23 22 26 26 C 1.32339 * 120.81419 * 359.97438 * 25 24 23 27 27 C 1.45119 * 118.75909 * 206.09988 * 9 7 2 28 28 H 0.96999 * 119.99886 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.16340 * 17.98065 * 10 9 7 30 30 H 1.08998 * 109.12459 * 258.74962 * 10 9 7 31 31 H 1.09000 * 109.45242 * 199.98719 * 11 10 9 32 32 H 1.09009 * 109.45045 * 80.05821 * 11 10 9 33 33 H 1.08997 * 109.58958 * 331.60860 * 12 11 10 34 34 H 1.09008 * 109.58738 * 211.18481 * 12 11 10 35 35 H 1.09004 * 109.47131 * 305.00214 * 16 14 13 36 36 H 1.09001 * 109.47320 * 184.99773 * 16 14 13 37 37 H 0.97004 * 119.99711 * 359.97438 * 17 16 14 38 38 H 1.09004 * 109.47111 * 59.99935 * 20 18 17 39 39 H 1.08997 * 109.47730 * 299.99842 * 20 18 17 40 40 H 1.07993 * 120.44734 * 0.27505 * 22 21 20 41 41 H 1.07996 * 119.12380 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.44677 * 179.97438 * 26 25 24 43 43 H 1.08998 * 109.46262 * 149.26867 * 27 9 7 44 44 H 1.08998 * 109.46110 * 29.30210 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0609 -1.2191 0.2489 9 7 1.3629 -2.3664 -0.3173 10 6 0.1711 -2.3025 -1.1843 11 6 0.1768 -3.4421 -2.2137 12 6 1.5844 -3.6477 -2.7361 13 8 2.2339 -4.6214 -1.9294 14 6 2.8928 -4.2231 -0.7839 15 1 3.6428 -3.4741 -1.0380 16 6 3.5763 -5.4321 -0.1422 17 7 4.6227 -5.9332 -1.0367 18 6 5.3620 -7.0012 -0.6772 19 8 5.1614 -7.5471 0.3870 20 6 6.4380 -7.5170 -1.5977 21 6 7.1114 -8.7078 -0.9656 22 6 6.6378 -9.9914 -1.1873 23 7 7.2552 -11.0129 -0.6159 24 6 8.3065 -10.8208 0.1554 25 7 8.7840 -9.6149 0.3895 26 6 8.2186 -8.5458 -0.1478 27 6 1.8750 -3.6166 0.2126 28 1 -0.4850 0.8400 0.0004 29 1 0.1608 -1.3468 -1.7085 30 1 -0.7240 -2.3819 -0.5674 31 1 -0.4841 -3.1865 -3.0419 32 1 -0.1725 -4.3601 -1.7409 33 1 2.1333 -2.7073 -2.6871 34 1 1.5439 -3.9961 -3.7682 35 1 2.8396 -6.2167 0.0306 36 1 4.0215 -5.1360 0.8076 37 1 4.7829 -5.4968 -1.8881 38 1 7.1750 -6.7327 -1.7706 39 1 5.9927 -7.8128 -2.5476 40 1 5.7795 -10.1561 -1.8217 41 1 8.7890 -11.6742 0.6084 42 1 8.6146 -7.5604 0.0483 43 1 1.0503 -4.3140 0.3588 44 1 2.3676 -3.4317 1.1672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149667084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:32 Heat of formation + Delta-G solvation = -8.358350 kcal Electronic energy + Delta-G solvation = -26614.942905 eV Core-core repulsion = 22761.383007 eV Total energy + Delta-G solvation = -3853.559898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33005 -39.74802 -38.82007 -35.35498 -34.73413 -33.99725 -33.93063 -32.21052 -31.54773 -29.35425 -27.97641 -25.67740 -25.28382 -24.85876 -23.60459 -22.54437 -20.95932 -20.37309 -19.59114 -17.91449 -17.87774 -17.31861 -17.02747 -16.40084 -16.10334 -15.31524 -15.11221 -15.09676 -14.84930 -14.42816 -14.09840 -13.90312 -13.83850 -13.74367 -13.39980 -13.17560 -12.94887 -12.52646 -12.14930 -12.09702 -11.46133 -11.26432 -11.22283 -11.05219 -11.02767 -10.91235 -10.71878 -10.31409 -10.17336 -9.92600 -9.82284 -9.77500 -9.59474 -9.48372 -9.04466 -8.88841 -8.48899 -6.81885 -5.89660 -3.34833 0.59948 0.83995 2.53909 3.10469 3.30022 3.36634 3.36655 3.59521 3.88513 3.96615 4.08931 4.25410 4.34038 4.39042 4.46703 4.76562 5.02716 5.12842 5.16361 5.23672 5.29973 5.47163 5.54659 5.58238 5.63971 5.80636 5.91340 5.96279 6.10079 6.11280 6.19396 6.28707 6.43464 6.50745 6.64469 6.67744 6.68624 6.76164 7.29348 7.46723 7.57547 7.70547 7.80904 8.12392 8.16463 8.33333 9.11148 9.75800 10.21893 11.17864 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.002448 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.607442 B =11437.186702 C =12116.750939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.008 3.992 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.268 4.268 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.177 4.177 12 C 0.088 3.912 13 O -0.396 6.396 14 C 0.067 3.933 15 H 0.052 0.948 16 C 0.132 3.868 17 N -0.717 5.717 18 C 0.510 3.490 19 O -0.541 6.541 20 C -0.095 4.095 21 C -0.167 4.167 22 C 0.162 3.838 23 N -0.520 5.520 24 C 0.288 3.712 25 N -0.519 5.519 26 C 0.161 3.839 27 C 0.128 3.872 28 H 0.255 0.745 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.404 0.596 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.166 0.834 41 H 0.195 0.805 42 H 0.166 0.834 43 H 0.043 0.957 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.918 -14.451 -7.147 20.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.052 3.948 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.316 6.316 14 C 0.005 3.995 15 H 0.070 0.930 16 C 0.008 3.992 17 N -0.368 5.368 18 C 0.296 3.704 19 O -0.418 6.418 20 C -0.137 4.137 21 C -0.172 4.172 22 C -0.004 4.004 23 N -0.233 5.233 24 C 0.000 4.000 25 N -0.233 5.233 26 C -0.005 4.005 27 C -0.002 4.002 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.238 0.762 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.183 0.817 41 H 0.212 0.788 42 H 0.183 0.817 43 H 0.062 0.938 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.035 -15.646 -5.971 20.622 hybrid contribution -0.101 2.269 -0.668 2.368 sum 11.934 -13.376 -6.639 19.116 Atomic orbital electron populations 1.70055 1.05261 1.25755 1.53476 1.25053 0.95296 0.98449 1.00361 0.86372 0.78930 0.83291 0.78163 1.20997 1.21554 1.20793 1.19167 0.92363 0.84872 1.43339 0.91631 1.43828 1.31498 1.01527 1.54393 1.21004 0.88447 0.95460 0.89917 1.22772 0.97077 1.01324 1.00423 1.22013 0.92801 0.92185 0.91762 1.86065 1.70706 1.38013 1.36768 1.22625 0.94904 0.93818 0.88173 0.93024 1.21447 0.88904 0.96114 0.92705 1.45983 1.36293 1.31448 1.23090 1.20376 0.82477 0.80329 0.87248 1.90742 1.69168 1.57874 1.24035 1.20539 0.97665 0.96282 0.99170 1.21094 0.98427 0.96543 1.01107 1.23097 0.96238 0.87509 0.93588 1.68428 1.09400 1.35709 1.09735 1.24968 0.89451 0.94423 0.91130 1.68436 1.32206 0.99931 1.22679 1.23101 0.90449 0.98192 0.88713 1.21405 0.95130 0.89009 0.94633 0.93450 0.90611 0.95450 0.92078 0.92393 0.92036 0.91225 0.90944 0.90196 0.76184 0.87231 0.87183 0.81691 0.78843 0.81686 0.93829 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.15 11.00 55.49 0.61 -24.54 16 2 C 0.01 0.20 4.89 -17.43 -0.09 0.12 16 3 Si 0.90 20.82 29.58 -169.99 -5.03 15.79 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.27 -6.91 9.46 -15.06 -0.14 -7.05 16 8 H 0.07 1.66 7.88 -52.49 -0.41 1.25 16 9 N -0.59 -13.85 2.23 -172.02 -0.38 -14.24 16 10 C 0.18 4.01 4.70 -3.19 -0.02 4.00 16 11 C -0.18 -3.17 5.78 -27.18 -0.16 -3.33 16 12 C 0.09 1.46 6.37 36.42 0.23 1.69 16 13 O -0.40 -6.49 9.38 -26.53 -0.25 -6.74 16 14 C 0.07 1.09 2.68 -25.78 -0.07 1.02 16 15 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 16 C 0.13 1.86 5.34 -4.05 -0.02 1.84 16 17 N -0.72 -8.12 5.49 -60.30 -0.33 -8.45 16 18 C 0.51 5.85 7.82 -10.98 -0.09 5.76 16 19 O -0.54 -8.62 16.03 5.56 0.09 -8.53 16 20 C -0.10 -0.67 5.88 -29.03 -0.17 -0.84 16 21 C -0.17 -1.53 4.41 -104.36 -0.46 -1.99 16 22 C 0.16 1.57 11.01 -17.20 -0.19 1.38 16 23 N -0.52 -5.67 10.44 -14.58 -0.15 -5.82 16 24 C 0.29 2.90 12.29 -92.15 -1.13 1.76 16 25 N -0.52 -5.68 10.44 -14.58 -0.15 -5.83 16 26 C 0.16 1.57 11.01 -17.20 -0.19 1.38 16 27 C 0.13 2.52 5.12 -3.83 -0.02 2.50 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 29 H 0.08 1.91 6.37 -51.93 -0.33 1.57 16 30 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.04 8.01 -51.92 -0.42 0.63 16 33 H 0.06 1.14 7.40 -51.93 -0.38 0.76 16 34 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.40 3.75 8.46 -40.82 -0.35 3.40 16 38 H 0.11 0.50 8.10 -51.93 -0.42 0.08 16 39 H 0.11 0.52 8.10 -51.93 -0.42 0.09 16 40 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 44 H 0.06 1.10 7.98 -51.93 -0.41 0.69 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -32.81 364.32 -9.11 -41.93 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.50 Total: 2.73 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -2.51 Total: 8.23 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.41 Total: -58.89 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.16 Total: -15.27 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.81 -9.11 -41.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149667084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.568 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds