Wall clock time and date at job start Fri Apr 10 2020 14:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00159 * 2 1 4 4 H 1.48501 * 109.47439 * 240.00019 * 3 2 1 5 5 H 1.48505 * 109.46721 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47213 * 119.99845 * 3 2 1 7 7 C 1.38818 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99610 * 195.46951 * 7 2 1 9 9 N 1.36931 * 120.00044 * 15.46904 * 7 2 1 10 10 C 1.47515 * 118.75725 * 26.09272 * 9 7 2 11 11 C 1.53570 * 111.02514 * 138.37308 * 10 9 7 12 12 C 1.51534 * 109.58402 * 320.02911 * 11 10 9 13 13 O 1.42155 * 108.76580 * 91.39835 * 12 11 10 14 14 C 1.38013 * 119.43574 * 272.77569 * 13 12 11 15 15 H 1.09003 * 109.47043 * 303.42601 * 14 13 12 16 16 C 1.52992 * 109.47032 * 183.42878 * 14 13 12 17 17 N 1.46499 * 109.47167 * 65.00325 * 16 14 13 18 18 C 1.34775 * 120.00097 * 180.02562 * 17 16 14 19 19 O 1.21276 * 120.00055 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.99870 * 179.97438 * 18 17 16 21 21 C 1.50701 * 109.47072 * 179.97438 * 20 18 17 22 22 C 1.38599 * 120.79804 * 90.00095 * 21 20 18 23 23 N 1.32330 * 119.10332 * 179.97438 * 22 21 20 24 24 C 1.31798 * 120.82084 * 0.02562 * 23 22 21 25 25 N 1.31799 * 121.75497 * 0.02562 * 24 23 22 26 26 C 1.32339 * 120.81419 * 359.97438 * 25 24 23 27 27 C 1.45119 * 118.75909 * 206.09988 * 9 7 2 28 28 H 0.96999 * 119.99886 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.16340 * 17.98065 * 10 9 7 30 30 H 1.08998 * 109.12459 * 258.74962 * 10 9 7 31 31 H 1.09000 * 109.45242 * 199.98719 * 11 10 9 32 32 H 1.09009 * 109.45045 * 80.05821 * 11 10 9 33 33 H 1.08997 * 109.58958 * 331.60860 * 12 11 10 34 34 H 1.09008 * 109.58738 * 211.18481 * 12 11 10 35 35 H 1.09004 * 109.47131 * 305.00214 * 16 14 13 36 36 H 1.09001 * 109.47320 * 184.99773 * 16 14 13 37 37 H 0.97004 * 119.99711 * 359.97438 * 17 16 14 38 38 H 1.09004 * 109.47111 * 59.99935 * 20 18 17 39 39 H 1.08997 * 109.47730 * 299.99842 * 20 18 17 40 40 H 1.07993 * 120.44734 * 0.27505 * 22 21 20 41 41 H 1.07996 * 119.12380 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.44677 * 179.97438 * 26 25 24 43 43 H 1.08998 * 109.46262 * 149.26867 * 27 9 7 44 44 H 1.08998 * 109.46110 * 29.30210 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0609 -1.2191 0.2489 9 7 1.3629 -2.3664 -0.3173 10 6 0.1711 -2.3025 -1.1843 11 6 0.1768 -3.4421 -2.2137 12 6 1.5844 -3.6477 -2.7361 13 8 2.2339 -4.6214 -1.9294 14 6 2.8928 -4.2231 -0.7839 15 1 3.6428 -3.4741 -1.0380 16 6 3.5763 -5.4321 -0.1422 17 7 4.6227 -5.9332 -1.0367 18 6 5.3620 -7.0012 -0.6772 19 8 5.1614 -7.5471 0.3870 20 6 6.4380 -7.5170 -1.5977 21 6 7.1114 -8.7078 -0.9656 22 6 6.6378 -9.9914 -1.1873 23 7 7.2552 -11.0129 -0.6159 24 6 8.3065 -10.8208 0.1554 25 7 8.7840 -9.6149 0.3895 26 6 8.2186 -8.5458 -0.1478 27 6 1.8750 -3.6166 0.2126 28 1 -0.4850 0.8400 0.0004 29 1 0.1608 -1.3468 -1.7085 30 1 -0.7240 -2.3819 -0.5674 31 1 -0.4841 -3.1865 -3.0419 32 1 -0.1725 -4.3601 -1.7409 33 1 2.1333 -2.7073 -2.6871 34 1 1.5439 -3.9961 -3.7682 35 1 2.8396 -6.2167 0.0306 36 1 4.0215 -5.1360 0.8076 37 1 4.7829 -5.4968 -1.8881 38 1 7.1750 -6.7327 -1.7706 39 1 5.9927 -7.8128 -2.5476 40 1 5.7795 -10.1561 -1.8217 41 1 8.7890 -11.6742 0.6084 42 1 8.6146 -7.5604 0.0483 43 1 1.0503 -4.3140 0.3588 44 1 2.3676 -3.4317 1.1672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149667084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:31 Heat of formation + Delta-G solvation = -30.471708 kcal Electronic energy + Delta-G solvation = -26615.901812 eV Core-core repulsion = 22761.383007 eV Total energy + Delta-G solvation = -3854.518805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.03927 -40.85512 -40.09503 -37.00171 -35.93132 -34.72269 -34.65050 -33.62515 -33.40049 -30.52911 -29.07023 -27.21832 -26.91203 -25.55782 -24.73878 -23.73052 -22.28428 -21.51285 -21.15006 -18.87018 -18.58777 -18.57999 -18.17755 -17.64226 -17.39513 -16.78686 -16.55827 -16.10941 -15.87523 -15.63715 -15.46203 -15.02433 -14.76125 -14.56564 -14.50355 -14.38747 -14.32963 -13.84226 -13.66415 -13.12503 -13.06600 -12.86353 -12.73719 -12.51111 -12.40198 -12.09939 -11.90546 -11.80583 -11.76041 -11.48191 -11.30245 -11.12111 -10.53263 -10.35864 -10.24814 -10.21297 -10.05769 -8.72846 -7.89665 -5.37138 -0.09617 0.13458 1.46915 1.47685 1.54777 1.67749 2.21225 2.49720 2.77508 2.86355 3.25750 3.26547 3.31238 3.56872 3.63532 3.69686 3.89392 3.97534 4.11235 4.16638 4.23437 4.37215 4.48773 4.54738 4.58053 4.63591 4.68185 4.72557 4.75823 4.87362 4.91990 4.94849 5.15513 5.19894 5.26186 5.43795 5.46133 5.47262 5.60903 5.75164 5.97938 6.35055 6.61102 6.75926 7.10092 7.13860 7.29420 7.86173 8.27420 9.15934 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.002448 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.607442 B =11437.186702 C =12116.750939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.046 4.046 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.270 4.270 8 H 0.069 0.931 9 N -0.606 5.606 10 C 0.185 3.815 11 C -0.165 4.165 12 C 0.092 3.908 13 O -0.390 6.390 14 C 0.088 3.912 15 H 0.049 0.951 16 C 0.143 3.857 17 N -0.709 5.709 18 C 0.512 3.488 19 O -0.590 6.590 20 C -0.083 4.083 21 C -0.170 4.170 22 C 0.149 3.851 23 N -0.541 5.541 24 C 0.277 3.723 25 N -0.541 5.541 26 C 0.148 3.852 27 C 0.121 3.879 28 H 0.250 0.750 29 H 0.046 0.954 30 H -0.009 1.009 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.417 0.583 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.186 0.814 41 H 0.217 0.783 42 H 0.185 0.815 43 H 0.040 0.960 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.592 -15.090 -9.098 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.400 4.400 8 H 0.087 0.913 9 N -0.328 5.328 10 C 0.060 3.940 11 C -0.204 4.204 12 C 0.016 3.984 13 O -0.309 6.309 14 C 0.026 3.974 15 H 0.066 0.934 16 C 0.018 3.982 17 N -0.361 5.361 18 C 0.299 3.701 19 O -0.470 6.470 20 C -0.123 4.123 21 C -0.174 4.174 22 C -0.017 4.017 23 N -0.254 5.254 24 C -0.010 4.010 25 N -0.255 5.255 26 C -0.017 4.017 27 C -0.007 4.007 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.009 0.991 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.254 0.746 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.203 0.797 41 H 0.233 0.767 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.745 -16.305 -7.957 22.762 hybrid contribution -0.650 2.415 -0.008 2.501 sum 13.095 -13.890 -7.965 20.685 Atomic orbital electron populations 1.70225 1.06664 1.25893 1.55338 1.25787 0.95993 1.01477 1.00951 0.85381 0.77567 0.79307 0.78412 1.19981 1.22315 1.20355 1.19485 0.92633 0.85857 1.42024 0.91303 1.44036 1.31563 1.02144 1.55063 1.20781 0.86920 0.96169 0.90157 1.22631 0.99046 0.99077 0.99644 1.22070 0.91109 0.91648 0.93526 1.86097 1.70531 1.37873 1.36405 1.22257 0.93589 0.94460 0.87064 0.93365 1.21120 0.89419 0.94781 0.92872 1.45832 1.35465 1.31594 1.23166 1.21092 0.82577 0.79356 0.87032 1.90735 1.70627 1.59259 1.26418 1.20594 0.96764 0.96183 0.98777 1.21287 0.98189 0.97069 1.00873 1.23559 0.96669 0.87766 0.93673 1.68462 1.09984 1.36521 1.10477 1.25454 0.89462 0.95046 0.91048 1.68467 1.32988 1.00546 1.23471 1.23558 0.90827 0.98783 0.88555 1.21585 0.95827 0.87749 0.95500 0.94127 0.93507 0.99120 0.89740 0.92238 0.94097 0.87165 0.91931 0.90666 0.74586 0.83937 0.83930 0.79749 0.76712 0.79789 0.94184 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.82 11.00 21.65 0.24 -53.58 16 2 C -0.05 -2.50 4.89 84.86 0.41 -2.08 16 3 Si 0.97 43.14 29.58 68.60 2.03 45.17 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.27 -14.04 9.46 84.04 0.80 -13.24 16 8 H 0.07 3.46 7.88 -2.91 -0.02 3.44 16 9 N -0.61 -28.74 2.23 -698.14 -1.55 -30.29 16 10 C 0.18 8.58 4.70 86.38 0.41 8.98 16 11 C -0.17 -5.70 5.78 30.31 0.18 -5.52 16 12 C 0.09 2.80 6.37 71.50 0.46 3.26 16 13 O -0.39 -11.74 9.38 -117.84 -1.11 -12.84 16 14 C 0.09 2.73 2.68 31.21 0.08 2.81 16 15 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 16 C 0.14 3.80 5.34 86.38 0.46 4.26 16 17 N -0.71 -14.02 5.49 -463.07 -2.54 -16.56 16 18 C 0.51 10.35 7.82 87.66 0.69 11.03 16 19 O -0.59 -18.03 16.03 -3.02 -0.05 -18.08 16 20 C -0.08 -0.84 5.88 29.10 0.17 -0.67 16 21 C -0.17 -2.70 4.41 -19.69 -0.09 -2.79 16 22 C 0.15 2.63 11.01 84.70 0.93 3.56 16 23 N -0.54 -11.29 10.44 -200.05 -2.09 -13.38 16 24 C 0.28 5.38 12.29 180.88 2.22 7.60 16 25 N -0.54 -11.34 10.44 -200.04 -2.09 -13.43 16 26 C 0.15 2.63 11.01 84.70 0.93 3.56 16 27 C 0.12 4.79 5.12 87.26 0.45 5.24 16 28 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.05 2.42 6.37 -2.39 -0.02 2.41 16 30 H -0.01 -0.49 8.04 -2.39 -0.02 -0.51 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.06 2.05 8.01 -2.38 -0.02 2.03 16 33 H 0.04 1.44 7.40 -2.39 -0.02 1.42 16 34 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.42 6.12 8.46 -92.71 -0.78 5.34 16 38 H 0.14 0.59 8.10 -2.38 -0.02 0.57 16 39 H 0.14 0.60 8.10 -2.39 -0.02 0.59 16 40 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.22 2.77 8.06 -2.91 -0.02 2.75 16 42 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.04 1.59 8.11 -2.39 -0.02 1.57 16 44 H 0.05 1.96 7.98 -2.39 -0.02 1.95 16 Total: -1.00 -73.58 364.32 1.16 -72.42 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.23 Total: 14.58 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 8.10 Total: 26.00 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -8.03 Total: -127.24 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.15 Total: -30.92 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -73.58 1.16 -72.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149667084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.945 kcal (2) G-P(sol) polarization free energy of solvation -73.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds