Wall clock time and date at job start Fri Apr 10 2020 14:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00692 * 2 1 4 4 H 1.48499 * 109.47377 * 240.00061 * 3 2 1 5 5 H 1.48507 * 109.46736 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47472 * 119.99757 * 3 2 1 7 7 C 1.37881 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00329 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47121 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47154 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47447 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00523 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99822 * 0.02562 * 13 12 11 15 15 C 1.47553 * 120.00271 * 179.97438 * 13 12 11 16 16 C 1.40107 * 120.86559 * 0.02562 * 15 13 12 17 17 N 1.31963 * 119.00964 * 179.97438 * 16 15 13 18 18 C 1.32674 * 120.89829 * 359.97438 * 17 16 15 19 19 N 1.37935 * 119.03919 * 179.97438 * 18 17 16 20 20 C 1.47011 * 111.00463 * 303.63776 * 19 18 17 21 21 C 1.53093 * 109.25791 * 177.60844 * 20 19 18 22 22 O 1.43013 * 109.26130 * 56.85143 * 21 20 19 23 23 C 1.43020 * 113.73304 * 301.32698 * 22 21 20 24 24 C 1.47012 * 110.99672 * 179.97438 * 19 18 17 25 25 N 1.32657 * 121.91512 * 0.02562 * 18 17 16 26 26 C 1.31970 * 120.90213 * 359.97438 * 25 18 17 27 27 H 0.97010 * 119.99557 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47316 * 59.99637 * 9 7 2 29 29 H 1.09004 * 109.46944 * 299.99388 * 9 7 2 30 30 H 1.08994 * 109.47096 * 59.99780 * 10 9 7 31 31 H 1.09004 * 109.46552 * 299.99432 * 10 9 7 32 32 H 1.08999 * 109.47472 * 59.99326 * 11 10 9 33 33 H 1.09009 * 109.46759 * 299.99574 * 11 10 9 34 34 H 0.97003 * 119.99770 * 359.97438 * 12 11 10 35 35 H 1.07994 * 120.49776 * 359.97438 * 16 15 13 36 36 H 1.09003 * 109.50479 * 297.54403 * 20 19 18 37 37 H 1.08998 * 109.50652 * 57.67121 * 20 19 18 38 38 H 1.08997 * 109.51222 * 296.90994 * 21 20 19 39 39 H 1.09007 * 109.54068 * 176.80225 * 21 20 19 40 40 H 1.08994 * 109.50830 * 298.73282 * 23 22 21 41 41 H 1.09002 * 109.54098 * 178.62634 * 23 22 21 42 42 H 1.08998 * 109.51249 * 302.33042 * 24 19 18 43 43 H 1.08999 * 109.50583 * 62.46430 * 24 19 18 44 44 H 1.08004 * 120.49424 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0018 11 6 1.4799 -4.9871 0.0012 12 7 2.4318 -6.1007 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7871 -7.5935 0.0010 15 6 2.9412 -8.4930 0.0020 16 6 4.3224 -8.2579 0.0024 17 7 5.1469 -9.2883 0.0030 18 6 4.6837 -10.5315 0.0036 19 7 5.5801 -11.5800 0.0036 20 6 6.4999 -11.4869 -1.1394 21 6 7.5122 -12.6331 -1.0675 22 8 6.8120 -13.8797 -1.0363 23 6 5.9078 -14.0046 0.0647 24 6 4.8791 -12.8722 0.0049 25 7 3.3837 -10.7956 0.0032 26 6 2.4941 -9.8208 0.0026 27 1 -0.4850 0.8402 0.0004 28 1 0.6244 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8904 30 1 2.8709 -3.6041 0.8922 31 1 2.8722 -3.6049 -0.8878 32 1 0.8542 -5.0450 -0.8894 33 1 0.8523 -5.0447 0.8906 34 1 3.3855 -5.9236 0.0021 35 1 4.7066 -7.2486 0.0023 36 1 5.9343 -11.5585 -2.0685 37 1 7.0267 -10.5333 -1.1059 38 1 8.1142 -12.5311 -0.1646 39 1 8.1610 -12.6020 -1.9429 40 1 6.4630 -13.9424 1.0006 41 1 5.3954 -14.9650 0.0087 42 1 4.2232 -12.9297 0.8736 43 1 4.2874 -12.9662 -0.9056 44 1 1.4373 -10.0433 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189395274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:48 Heat of formation + Delta-G solvation = -20.743362 kcal Electronic energy + Delta-G solvation = -25558.008608 eV Core-core repulsion = 21703.911656 eV Total energy + Delta-G solvation = -3854.096953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.86758 -40.09188 -39.17287 -36.39374 -35.60517 -34.34706 -33.41314 -32.10547 -31.78597 -30.95303 -28.19200 -26.76531 -25.54557 -24.39036 -23.96219 -22.93487 -21.40122 -20.87474 -20.33943 -18.68571 -18.18641 -17.67475 -16.63813 -16.37563 -16.18880 -15.95055 -15.58886 -15.51470 -15.42013 -15.05983 -14.67287 -14.50383 -14.36225 -14.20602 -13.77960 -13.71183 -12.94298 -12.33079 -12.19092 -12.12106 -11.91042 -11.90390 -11.83295 -11.37726 -11.25034 -10.92478 -10.80378 -10.79041 -10.67022 -10.16718 -10.11989 -9.93152 -9.66835 -9.46972 -9.17937 -9.07341 -8.84907 -8.40480 -6.05179 -4.08572 0.10748 0.66892 2.42235 2.73286 3.11412 3.29738 3.30679 3.34839 3.36614 3.44357 3.61451 4.04910 4.11220 4.26709 4.38975 4.41315 4.47854 4.55625 4.59666 4.72665 4.73594 5.00625 5.11229 5.20721 5.26549 5.30627 5.34098 5.40382 5.58216 5.67449 5.68747 5.93602 6.07140 6.15969 6.30983 6.51457 6.55044 6.63131 6.72173 6.92489 7.46986 7.58673 7.60279 7.70700 7.92815 8.13740 8.33785 8.97709 9.55776 11.05948 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030121 B = 0.001850 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.354054 B =15133.020212 C =15934.187823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.718 5.718 13 C 0.566 3.434 14 O -0.536 6.536 15 C -0.268 4.268 16 C 0.211 3.789 17 N -0.530 5.530 18 C 0.505 3.495 19 N -0.459 5.459 20 C 0.029 3.971 21 C 0.064 3.936 22 O -0.383 6.383 23 C 0.061 3.939 24 C 0.031 3.969 25 N -0.553 5.553 26 C 0.235 3.765 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.397 0.603 35 H 0.177 0.823 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.067 0.933 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.691 -27.457 -1.007 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.368 5.368 13 C 0.351 3.649 14 O -0.414 6.414 15 C -0.277 4.277 16 C 0.042 3.958 17 N -0.248 5.248 18 C 0.150 3.850 19 N -0.179 5.179 20 C -0.097 4.097 21 C -0.014 4.014 22 O -0.302 6.302 23 C -0.016 4.016 24 C -0.096 4.096 25 N -0.272 5.272 26 C 0.067 3.933 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.231 0.769 35 H 0.194 0.806 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.085 0.915 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 13.697 -28.432 -0.729 31.567 hybrid contribution -0.191 2.109 -0.228 2.130 sum 13.506 -26.323 -0.957 29.601 Atomic orbital electron populations 1.69953 1.06057 1.26844 1.50329 1.25029 0.94871 0.99322 0.95226 0.86634 0.79559 0.83060 0.78590 1.20248 1.21261 1.20238 1.21153 0.92955 0.90919 1.51236 0.92674 1.19029 0.93827 0.90791 0.97726 1.21911 0.99857 0.93237 1.00997 1.21733 0.91741 0.84726 1.02389 1.46118 1.10929 1.05701 1.74092 1.17652 0.87639 0.82513 0.77143 1.90807 1.15798 1.84657 1.50145 1.21724 0.96106 0.97067 1.12794 1.23383 0.88326 0.98265 0.85868 1.68007 1.39769 0.98455 1.18533 1.21119 0.86645 0.89013 0.88203 1.58396 1.16655 1.01558 1.41258 1.22954 0.94775 1.02415 0.89592 1.22741 0.93148 0.82023 1.03445 1.88026 1.57448 1.36226 1.48468 1.22802 0.90581 0.98147 0.90120 1.22806 0.96327 0.85913 1.04558 1.68469 1.01914 1.37157 1.19672 1.23349 1.00108 0.86299 0.83580 0.92841 0.96215 0.96217 0.92591 0.92615 0.91366 0.91353 0.76884 0.80639 0.92512 0.87375 0.91597 0.87418 0.91923 0.87465 0.88071 0.91509 0.79888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 11 C 0.12 1.90 5.67 -4.05 -0.02 1.88 16 12 N -0.72 -9.32 5.51 -61.35 -0.34 -9.66 16 13 C 0.57 7.77 7.78 -12.46 -0.10 7.68 16 14 O -0.54 -9.28 16.43 5.29 0.09 -9.19 16 15 C -0.27 -2.98 5.91 -104.70 -0.62 -3.60 16 16 C 0.21 2.04 10.80 -16.79 -0.18 1.85 16 17 N -0.53 -5.69 9.70 -13.66 -0.13 -5.83 16 18 C 0.51 5.48 7.16 -323.04 -2.31 3.17 16 19 N -0.46 -4.18 4.78 -175.15 -0.84 -5.02 16 20 C 0.03 0.21 5.48 -3.72 -0.02 0.19 16 21 C 0.06 0.38 7.01 37.21 0.26 0.64 16 22 O -0.38 -2.95 10.83 -35.23 -0.38 -3.33 16 23 C 0.06 0.37 7.01 37.21 0.26 0.63 16 24 C 0.03 0.24 4.79 -3.71 -0.02 0.22 16 25 N -0.55 -6.05 8.64 -13.65 -0.12 -6.17 16 26 C 0.23 2.56 10.87 -16.79 -0.18 2.38 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 34 H 0.40 3.94 6.59 -40.82 -0.27 3.67 16 35 H 0.18 1.17 6.52 -52.49 -0.34 0.83 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.11 0.78 7.66 -51.93 -0.40 0.38 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.77 7.83 -51.93 -0.41 0.36 16 43 H 0.07 0.56 8.00 -51.93 -0.42 0.14 16 44 H 0.18 1.79 7.74 -52.48 -0.41 1.39 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -33.52 367.27 -10.52 -44.04 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.43 Total: -0.86 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.62 Total: -0.03 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.69 Total: -52.32 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.29 Total: -12.52 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.52 -10.52 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189395274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.294 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds