Wall clock time and date at job start Fri Apr 10 2020 14:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00692 * 2 1 4 4 H 1.48499 * 109.47377 * 240.00061 * 3 2 1 5 5 H 1.48507 * 109.46736 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47472 * 119.99757 * 3 2 1 7 7 C 1.37881 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00329 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47121 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47154 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47447 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00523 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99822 * 0.02562 * 13 12 11 15 15 C 1.47553 * 120.00271 * 179.97438 * 13 12 11 16 16 C 1.40107 * 120.86559 * 0.02562 * 15 13 12 17 17 N 1.31963 * 119.00964 * 179.97438 * 16 15 13 18 18 C 1.32674 * 120.89829 * 359.97438 * 17 16 15 19 19 N 1.37935 * 119.03919 * 179.97438 * 18 17 16 20 20 C 1.47011 * 111.00463 * 303.63776 * 19 18 17 21 21 C 1.53093 * 109.25791 * 177.60844 * 20 19 18 22 22 O 1.43013 * 109.26130 * 56.85143 * 21 20 19 23 23 C 1.43020 * 113.73304 * 301.32698 * 22 21 20 24 24 C 1.47012 * 110.99672 * 179.97438 * 19 18 17 25 25 N 1.32657 * 121.91512 * 0.02562 * 18 17 16 26 26 C 1.31970 * 120.90213 * 359.97438 * 25 18 17 27 27 H 0.97010 * 119.99557 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47316 * 59.99637 * 9 7 2 29 29 H 1.09004 * 109.46944 * 299.99388 * 9 7 2 30 30 H 1.08994 * 109.47096 * 59.99780 * 10 9 7 31 31 H 1.09004 * 109.46552 * 299.99432 * 10 9 7 32 32 H 1.08999 * 109.47472 * 59.99326 * 11 10 9 33 33 H 1.09009 * 109.46759 * 299.99574 * 11 10 9 34 34 H 0.97003 * 119.99770 * 359.97438 * 12 11 10 35 35 H 1.07994 * 120.49776 * 359.97438 * 16 15 13 36 36 H 1.09003 * 109.50479 * 297.54403 * 20 19 18 37 37 H 1.08998 * 109.50652 * 57.67121 * 20 19 18 38 38 H 1.08997 * 109.51222 * 296.90994 * 21 20 19 39 39 H 1.09007 * 109.54068 * 176.80225 * 21 20 19 40 40 H 1.08994 * 109.50830 * 298.73282 * 23 22 21 41 41 H 1.09002 * 109.54098 * 178.62634 * 23 22 21 42 42 H 1.08998 * 109.51249 * 302.33042 * 24 19 18 43 43 H 1.08999 * 109.50583 * 62.46430 * 24 19 18 44 44 H 1.08004 * 120.49424 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0018 11 6 1.4799 -4.9871 0.0012 12 7 2.4318 -6.1007 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7871 -7.5935 0.0010 15 6 2.9412 -8.4930 0.0020 16 6 4.3224 -8.2579 0.0024 17 7 5.1469 -9.2883 0.0030 18 6 4.6837 -10.5315 0.0036 19 7 5.5801 -11.5800 0.0036 20 6 6.4999 -11.4869 -1.1394 21 6 7.5122 -12.6331 -1.0675 22 8 6.8120 -13.8797 -1.0363 23 6 5.9078 -14.0046 0.0647 24 6 4.8791 -12.8722 0.0049 25 7 3.3837 -10.7956 0.0032 26 6 2.4941 -9.8208 0.0026 27 1 -0.4850 0.8402 0.0004 28 1 0.6244 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8904 30 1 2.8709 -3.6041 0.8922 31 1 2.8722 -3.6049 -0.8878 32 1 0.8542 -5.0450 -0.8894 33 1 0.8523 -5.0447 0.8906 34 1 3.3855 -5.9236 0.0021 35 1 4.7066 -7.2486 0.0023 36 1 5.9343 -11.5585 -2.0685 37 1 7.0267 -10.5333 -1.1059 38 1 8.1142 -12.5311 -0.1646 39 1 8.1610 -12.6020 -1.9429 40 1 6.4630 -13.9424 1.0006 41 1 5.3954 -14.9650 0.0087 42 1 4.2232 -12.9297 0.8736 43 1 4.2874 -12.9662 -0.9056 44 1 1.4373 -10.0433 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189395274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:47 Heat of formation + Delta-G solvation = -43.667544 kcal Electronic energy + Delta-G solvation = -25559.002675 eV Core-core repulsion = 21703.911656 eV Total energy + Delta-G solvation = -3855.091020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.66285 -40.92877 -40.07320 -37.11050 -36.96829 -35.39813 -34.98452 -33.40245 -32.35249 -32.24764 -29.10799 -28.24508 -26.28254 -25.53619 -24.69844 -24.28649 -22.37767 -22.05282 -21.52086 -19.42310 -19.04982 -18.78414 -18.30981 -17.21772 -16.95324 -16.81085 -16.66330 -16.48366 -16.39648 -16.06638 -15.77470 -15.50394 -15.39291 -15.24721 -14.80015 -14.62036 -14.23257 -13.75365 -13.52245 -13.45929 -13.04170 -12.71391 -12.68174 -12.54349 -12.44422 -12.40642 -12.15972 -11.81481 -11.65372 -11.61412 -11.51551 -11.26095 -11.01182 -10.74601 -10.53056 -10.48733 -10.20480 -9.69380 -8.17985 -6.29055 -0.74537 -0.12716 1.43045 1.45563 1.53325 1.58808 1.85135 2.01516 2.43483 2.57050 2.82952 2.85890 3.15981 3.31379 3.34275 3.58930 3.72529 3.80220 3.88004 3.98314 4.10752 4.18313 4.20088 4.24059 4.45556 4.56011 4.58087 4.66592 4.69106 4.73318 4.89460 4.96284 4.96691 4.97560 5.19570 5.30583 5.35791 5.39816 5.54047 5.73438 5.85582 5.86376 6.07331 6.23696 6.42398 6.79095 6.88614 7.07571 7.40424 8.93646 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030121 B = 0.001850 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.354054 B =15133.020212 C =15934.187823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.130 3.870 12 N -0.705 5.705 13 C 0.571 3.429 14 O -0.577 6.577 15 C -0.276 4.276 16 C 0.223 3.777 17 N -0.539 5.539 18 C 0.499 3.501 19 N -0.464 5.464 20 C 0.030 3.970 21 C 0.065 3.935 22 O -0.399 6.399 23 C 0.063 3.937 24 C 0.033 3.967 25 N -0.561 5.561 26 C 0.234 3.766 27 H 0.262 0.738 28 H -0.007 1.007 29 H -0.007 1.007 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.415 0.585 35 H 0.208 0.792 36 H 0.050 0.950 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.128 0.872 40 H 0.069 0.931 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.057 0.943 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.477 -27.886 -1.024 32.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.141 4.141 11 C 0.006 3.994 12 N -0.357 5.357 13 C 0.358 3.642 14 O -0.457 6.457 15 C -0.285 4.285 16 C 0.054 3.946 17 N -0.257 5.257 18 C 0.144 3.856 19 N -0.183 5.183 20 C -0.095 4.095 21 C -0.012 4.012 22 O -0.318 6.318 23 C -0.014 4.014 24 C -0.094 4.094 25 N -0.280 5.280 26 C 0.066 3.934 27 H 0.071 0.929 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.253 0.747 35 H 0.224 0.776 36 H 0.068 0.932 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.146 0.854 40 H 0.087 0.913 41 H 0.144 0.856 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 16.545 -28.888 -0.748 33.298 hybrid contribution -1.043 2.163 -0.215 2.411 sum 15.501 -26.724 -0.963 30.910 Atomic orbital electron populations 1.70104 1.07894 1.27769 1.51679 1.26011 0.95738 1.03506 0.94897 0.85492 0.78188 0.78067 0.79235 1.19056 1.21352 1.19068 1.21666 0.93792 0.92012 1.50401 0.91438 1.18954 0.94506 0.92940 0.95165 1.21617 0.98488 0.91624 1.02405 1.21311 0.91804 0.85015 1.01232 1.45817 1.11380 1.04703 1.73787 1.17911 0.87423 0.82931 0.75945 1.90791 1.17704 1.85211 1.52033 1.21431 0.96242 0.95984 1.14847 1.23832 0.87461 0.99372 0.83979 1.68112 1.39780 0.98570 1.19219 1.21487 0.86915 0.89674 0.87507 1.58498 1.16548 1.01668 1.41585 1.23016 0.94625 1.03274 0.88599 1.22868 0.92729 0.80833 1.04736 1.88010 1.57742 1.36938 1.49102 1.22898 0.90153 0.98275 0.90026 1.22835 0.96726 0.85861 1.03947 1.68527 1.02086 1.37052 1.20378 1.23486 1.00489 0.86441 0.83030 0.92895 0.98866 0.98894 0.91110 0.91081 0.92668 0.92699 0.74747 0.77601 0.93198 0.87161 0.91007 0.85423 0.91321 0.85638 0.88295 0.92453 0.79491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.54 -29.36 9.11 25.60 0.23 -29.13 16 8 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.11 4.97 29.85 0.15 1.25 16 10 C -0.10 -3.70 5.27 30.59 0.16 -3.54 16 11 C 0.13 4.21 5.67 86.38 0.49 4.70 16 12 N -0.71 -17.23 5.51 -466.27 -2.57 -19.80 16 13 C 0.57 15.26 7.78 86.70 0.67 15.93 16 14 O -0.58 -20.14 16.43 -3.99 -0.07 -20.20 16 15 C -0.28 -5.81 5.91 -19.91 -0.12 -5.93 16 16 C 0.22 3.81 10.80 85.13 0.92 4.73 16 17 N -0.54 -10.58 9.70 -197.12 -1.91 -12.49 16 18 C 0.50 10.24 7.16 261.57 1.87 12.11 16 19 N -0.46 -7.87 4.78 -708.05 -3.38 -11.25 16 20 C 0.03 0.41 5.48 86.31 0.47 0.88 16 21 C 0.07 0.65 7.01 72.01 0.50 1.16 16 22 O -0.40 -5.46 10.83 -148.98 -1.61 -7.07 16 23 C 0.06 0.67 7.01 72.01 0.50 1.17 16 24 C 0.03 0.47 4.79 86.31 0.41 0.89 16 25 N -0.56 -11.89 8.64 -197.11 -1.70 -13.60 16 26 C 0.23 4.97 10.87 85.13 0.93 5.90 16 27 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 28 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.41 7.04 6.59 -92.71 -0.61 6.43 16 35 H 0.21 2.04 6.52 -2.91 -0.02 2.02 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 1.41 7.66 -2.39 -0.02 1.40 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.10 1.43 7.83 -2.39 -0.02 1.41 16 43 H 0.06 0.93 8.00 -2.39 -0.02 0.91 16 44 H 0.19 3.70 7.74 -2.91 -0.02 3.68 16 Total: -1.00 -72.76 367.27 -0.86 -73.62 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.41 Total: 11.31 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 7.67 Total: 10.37 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -9.28 Total: -113.11 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -1.68 Total: -27.27 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -72.76 -0.86 -73.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189395274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.956 kcal (2) G-P(sol) polarization free energy of solvation -72.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds