Wall clock time and date at job start Fri Apr 10 2020 14:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 120.00470 * 2 1 4 4 H 1.48502 * 109.46762 * 270.00037 * 3 2 1 5 5 H 1.48495 * 109.46996 * 29.99750 * 3 2 1 6 6 H 1.48504 * 109.47124 * 149.99833 * 3 2 1 7 7 C 1.38957 * 119.99436 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00308 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99669 * 180.02562 * 7 2 1 10 10 C 1.34772 * 119.99748 * 180.02562 * 9 7 2 11 11 O 1.21299 * 120.00363 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99940 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47474 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00562 * 179.97438 * 13 12 10 15 15 C 1.53037 * 109.46568 * 204.99743 * 14 13 12 16 16 C 1.53182 * 109.31679 * 178.62509 * 15 14 13 17 17 N 1.46929 * 108.77362 * 54.63496 * 16 15 14 18 18 C 1.34779 * 120.62652 * 126.36678 * 17 16 15 19 19 O 1.21694 * 120.00676 * 0.12456 * 18 17 16 20 20 C 1.46686 * 119.99767 * 180.12294 * 18 17 16 21 21 C 1.37859 * 126.23449 * 150.92070 * 20 18 17 22 22 C 1.39831 * 107.08850 * 179.75948 * 21 20 18 23 23 C 1.35447 * 107.86366 * 0.24251 * 22 21 20 24 24 N 1.35531 * 108.87110 * 359.97438 * 23 22 21 25 25 H 0.97006 * 125.68083 * 180.02562 * 24 23 22 26 26 C 1.46924 * 118.73902 * 306.64528 * 17 16 15 27 27 C 1.52755 * 109.01115 * 53.31016 * 26 17 16 28 28 H 0.97004 * 119.99411 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00171 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47583 * 59.99718 * 12 10 9 31 31 H 1.08997 * 109.47360 * 299.99666 * 12 10 9 32 32 H 1.00906 * 110.99439 * 303.95280 * 13 12 10 33 33 H 1.08997 * 109.45710 * 324.97461 * 14 13 12 34 34 H 1.09000 * 109.49127 * 58.67049 * 15 14 13 35 35 H 1.08997 * 109.52028 * 298.59703 * 15 14 13 36 36 H 1.09001 * 109.58890 * 294.85085 * 16 15 14 37 37 H 1.09000 * 109.70643 * 174.49255 * 16 15 14 38 38 H 1.08006 * 126.45640 * 0.02562 * 21 20 18 39 39 H 1.08007 * 126.06902 * 180.25522 * 22 21 20 40 40 H 1.08005 * 125.56471 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.58467 * 173.14573 * 26 17 16 42 42 H 1.08994 * 109.58520 * 293.56369 * 26 17 16 43 43 H 1.08994 * 109.56824 * 185.55296 * 27 26 17 44 44 H 1.09003 * 109.36262 * 65.49119 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0462 -1.4001 5 1 1.4458 2.6526 0.7000 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2035 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0011 10 6 4.0536 -2.3707 0.0011 11 8 3.4471 -3.4212 0.0011 12 6 5.5606 -2.3709 0.0022 13 7 6.0502 -3.7559 0.0026 14 6 7.5187 -3.7952 0.0031 15 6 7.9936 -5.1162 -0.6062 16 6 9.5250 -5.1391 -0.6355 17 7 10.0278 -4.8853 0.7216 18 6 10.8985 -5.7352 1.3014 19 8 11.2774 -6.7227 0.6995 20 6 11.3894 -5.4698 2.6579 21 6 11.7869 -6.4144 3.5800 22 6 12.1828 -5.7248 4.7301 23 6 12.0188 -4.4005 4.4977 24 7 11.5346 -4.2324 3.2430 25 1 11.3282 -3.3814 2.8255 26 6 9.5585 -3.6908 1.4369 27 6 8.0310 -3.6812 1.4408 28 1 -0.4849 0.8401 -0.0004 29 1 3.8649 -0.3635 0.0014 30 1 5.9233 -1.8574 0.8926 31 1 5.9247 -1.8567 -0.8872 32 1 5.6741 -4.2721 0.7838 33 1 7.9044 -2.9637 -0.5867 34 1 7.6089 -5.2073 -1.6220 35 1 7.6288 -5.9476 -0.0031 36 1 9.8892 -4.3649 -1.3108 37 1 9.8716 -6.1145 -0.9771 38 1 11.7953 -7.4852 3.4389 39 1 12.5538 -6.1691 5.6420 40 1 12.2387 -3.6079 5.1976 41 1 9.9251 -3.7120 2.4632 42 1 9.9255 -2.7962 0.9341 43 1 7.6729 -2.7511 1.8820 44 1 7.6658 -4.5259 2.0251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199297661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:16 Heat of formation + Delta-G solvation = -27.279236 kcal Electronic energy + Delta-G solvation = -26398.525719 eV Core-core repulsion = 22544.145350 eV Total energy + Delta-G solvation = -3854.380369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.50843 -40.76037 -40.23402 -38.86629 -36.42932 -35.83387 -33.76359 -33.09329 -32.14505 -31.76677 -30.14657 -28.46499 -26.30487 -24.81236 -24.49761 -22.92923 -21.88791 -21.45118 -21.18459 -20.93131 -20.21903 -18.95359 -17.88912 -17.43092 -16.95370 -16.69709 -16.53409 -16.35542 -15.96353 -15.52555 -15.20562 -15.06982 -14.99390 -14.75403 -14.67682 -14.52710 -14.28575 -13.98631 -13.74078 -13.58037 -13.35574 -13.21115 -13.11533 -12.89007 -12.62369 -12.40791 -12.29195 -11.97598 -11.90606 -11.60014 -11.51102 -11.22034 -10.44183 -10.24987 -10.00150 -9.85598 -9.29765 -9.15781 -8.41048 -6.02478 0.48539 1.30073 1.37068 1.45804 1.71803 1.81089 1.96391 2.07950 2.23962 2.40371 2.71997 3.15262 3.35555 3.46651 3.66015 3.87526 3.91691 4.11768 4.19714 4.25982 4.32844 4.35621 4.38646 4.42720 4.49407 4.53299 4.59901 4.61977 4.74524 4.83620 4.95318 5.08738 5.12787 5.22969 5.25202 5.44410 5.53252 5.74993 5.91424 5.91819 6.08833 6.23394 6.35280 6.52168 6.60059 6.88526 6.97429 7.40108 7.97565 8.76764 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.002354 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.932757 B =11891.990802 C =12555.615430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.018 4.018 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.226 1.226 7 C -0.330 4.330 8 H 0.052 0.948 9 N -0.590 5.590 10 C 0.446 3.554 11 O -0.618 6.618 12 C 0.064 3.936 13 N -0.684 5.684 14 C 0.093 3.907 15 C -0.116 4.116 16 C 0.117 3.883 17 N -0.605 5.605 18 C 0.584 3.416 19 O -0.578 6.578 20 C -0.077 4.077 21 C -0.134 4.134 22 C -0.227 4.227 23 C 0.039 3.961 24 N -0.530 5.530 25 H 0.433 0.567 26 C 0.093 3.907 27 C -0.161 4.161 28 H 0.279 0.721 29 H 0.391 0.609 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.342 0.658 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.046 0.954 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.132 0.868 39 H 0.159 0.841 40 H 0.214 0.786 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.367 1.081 7.892 31.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.217 4.217 3 Si 0.788 3.212 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.149 1.149 7 C -0.459 4.459 8 H 0.070 0.930 9 N -0.232 5.232 10 C 0.234 3.766 11 O -0.503 6.503 12 C -0.068 4.068 13 N -0.314 5.314 14 C -0.017 4.017 15 C -0.155 4.155 16 C -0.006 4.006 17 N -0.337 5.337 18 C 0.374 3.626 19 O -0.458 6.458 20 C -0.190 4.190 21 C -0.161 4.161 22 C -0.251 4.251 23 C -0.097 4.097 24 N -0.133 5.133 25 H 0.278 0.722 26 C -0.030 4.030 27 C -0.201 4.201 28 H 0.088 0.912 29 H 0.227 0.773 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.161 0.839 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.150 0.850 39 H 0.176 0.824 40 H 0.231 0.769 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.114 0.886 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 29.830 0.056 6.739 30.581 hybrid contribution -0.617 0.864 0.638 1.239 sum 29.213 0.921 7.377 30.144 Atomic orbital electron populations 1.69821 1.08280 1.29278 1.50284 1.26188 0.96509 1.02932 0.96026 0.85323 0.79574 0.76381 0.79944 1.18210 1.20189 1.14938 1.18995 0.81654 0.94828 1.50432 0.92985 1.42019 1.05714 1.07673 1.67785 1.21114 0.91265 0.83210 0.81025 1.90559 1.71552 1.32985 1.55182 1.21678 0.89096 0.91805 1.04244 1.60129 1.07719 1.12071 1.51528 1.21652 0.85792 0.98767 0.95451 1.21817 0.94025 0.97263 1.02394 1.21672 0.93222 1.03348 0.82331 1.48158 1.43610 1.25003 1.16947 1.17487 0.78664 0.82171 0.84245 1.90803 1.60692 1.29916 1.64411 1.20100 1.17063 0.86875 0.94951 1.21494 1.01876 0.98789 0.93976 1.21205 1.10274 0.93536 1.00066 1.22775 1.00885 0.99224 0.86813 1.42727 1.50034 1.07379 1.13146 0.72218 1.22271 0.94620 0.87618 0.98514 1.22565 0.95834 1.03446 0.98243 0.91166 0.77336 0.90005 0.86461 0.83929 0.87904 0.89837 0.93489 0.88662 0.90384 0.84985 0.82350 0.76944 0.88265 0.87427 0.88605 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.04 13.96 21.67 0.30 -55.74 16 2 C -0.02 -0.99 5.50 84.93 0.47 -0.53 16 3 Si 0.97 37.38 27.74 68.60 1.90 39.29 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.28 -10.68 7.11 99.48 0.71 -9.98 16 6 H -0.23 -7.07 6.52 99.48 0.65 -6.42 16 7 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 8 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 9 N -0.59 -26.82 5.09 -306.98 -1.56 -28.38 16 10 C 0.45 19.34 7.82 87.66 0.69 20.02 16 11 O -0.62 -33.96 15.78 -3.09 -0.05 -34.01 16 12 C 0.06 1.72 5.96 85.56 0.51 2.23 16 13 N -0.68 -18.27 5.87 -495.45 -2.91 -21.18 16 14 C 0.09 1.62 2.43 44.94 0.11 1.73 16 15 C -0.12 -2.24 5.69 30.67 0.17 -2.07 16 16 C 0.12 2.02 6.44 86.36 0.56 2.57 16 17 N -0.61 -10.33 2.98 -824.46 -2.46 -12.78 16 18 C 0.58 13.56 7.63 86.45 0.66 14.22 16 19 O -0.58 -18.30 16.42 -4.33 -0.07 -18.37 16 20 C -0.08 -1.46 6.37 40.35 0.26 -1.20 16 21 C -0.13 -2.64 10.77 22.57 0.24 -2.40 16 22 C -0.23 -3.01 10.81 22.01 0.24 -2.77 16 23 C 0.04 0.32 11.89 83.48 0.99 1.31 16 24 N -0.53 -5.31 4.74 -183.63 -0.87 -6.18 16 25 H 0.43 1.74 6.46 -92.70 -0.60 1.15 16 26 C 0.09 0.91 5.53 86.22 0.48 1.39 16 27 C -0.16 -2.19 5.32 30.53 0.16 -2.03 16 28 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.39 14.30 5.76 -92.71 -0.53 13.77 16 30 H 0.08 1.65 7.41 -2.39 -0.02 1.63 16 31 H 0.12 2.56 8.05 -2.39 -0.02 2.54 16 32 H 0.34 10.34 8.18 -89.69 -0.73 9.61 16 33 H 0.10 1.38 7.80 -2.39 -0.02 1.36 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.68 7.00 -2.39 -0.02 1.67 16 38 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 39 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.21 -0.12 8.06 -2.91 -0.02 -0.14 16 41 H 0.10 0.77 3.88 -2.38 -0.01 0.76 16 42 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.10 1.02 7.42 -2.39 -0.02 1.01 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -87.11 358.16 -0.19 -87.30 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -0.86 Total: 35.79 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 6.39 Total: 14.26 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -7.50 Total: -124.27 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.12 Total: -52.38 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 1.90 Total: 39.29 kcal Total: -87.11 -0.19 -87.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199297661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.022 kcal (2) G-P(sol) polarization free energy of solvation -87.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds