Wall clock time and date at job start Fri Apr 10 2020 14:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47047 * 269.99123 * 3 2 1 5 5 H 1.48501 * 109.47447 * 29.99479 * 3 2 1 6 6 H 1.48499 * 109.46902 * 149.99820 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.46843 * 110.99561 * 294.20651 * 13 12 10 15 15 C 1.53038 * 109.52070 * 174.16043 * 14 13 12 16 16 C 1.53125 * 109.27759 * 59.18160 * 15 14 13 17 17 N 1.46493 * 109.52214 * 182.44245 * 16 15 14 18 18 C 1.34782 * 119.99878 * 274.68210 * 17 16 15 19 19 O 1.21693 * 119.99921 * 359.97438 * 18 17 16 20 20 C 1.46678 * 119.99832 * 180.02562 * 18 17 16 21 21 C 1.37882 * 126.23067 * 179.68519 * 20 18 17 22 22 C 1.39840 * 107.08159 * 179.84900 * 21 20 18 23 23 C 1.35451 * 107.86547 * 0.42109 * 22 21 20 24 24 N 1.35536 * 108.87287 * 359.73724 * 23 22 21 25 25 H 0.96996 * 125.67975 * 180.02562 * 24 23 22 26 26 C 1.53118 * 109.15784 * 302.34522 * 16 15 14 27 27 C 1.46843 * 110.99818 * 169.99758 * 13 12 10 28 28 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 31 31 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 32 32 H 1.08997 * 109.46379 * 294.17496 * 14 13 12 33 33 H 1.09000 * 109.46577 * 54.15254 * 14 13 12 34 34 H 1.09001 * 109.50668 * 299.24264 * 15 14 13 35 35 H 1.08995 * 109.50406 * 179.11983 * 15 14 13 36 36 H 1.08996 * 109.57607 * 62.28167 * 16 15 14 37 37 H 0.97001 * 120.00864 * 94.68187 * 17 16 15 38 38 H 1.07999 * 126.45216 * 0.02562 * 21 20 18 39 39 H 1.08000 * 126.06151 * 180.15965 * 22 21 20 40 40 H 1.07997 * 125.56378 * 179.71856 * 23 22 21 41 41 H 1.08995 * 109.50555 * 297.71216 * 26 16 15 42 42 H 1.08995 * 109.50409 * 177.59757 * 26 16 15 43 43 H 1.08996 * 109.46300 * 305.85393 * 27 13 12 44 44 H 1.09004 * 109.46280 * 65.83399 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 2.9686 -6.0086 -1.2588 15 6 4.0485 -7.0893 -1.1690 16 6 3.3853 -8.4476 -0.9245 17 7 4.4172 -9.4773 -0.7796 18 6 4.9293 -10.0767 -1.8728 19 8 4.5340 -9.7629 -2.9802 20 6 5.9621 -11.1080 -1.7277 21 6 6.5674 -11.8050 -2.7519 22 6 7.4871 -12.6803 -2.1657 23 6 7.4222 -12.5132 -0.8231 24 7 6.4993 -11.5606 -0.5439 25 1 6.2578 -11.2494 0.3425 26 6 2.5505 -8.3758 0.3571 27 6 1.5141 -7.2578 0.2231 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6165 -4.9246 0.8846 31 1 0.6179 -4.9168 -0.8953 32 1 2.3012 -6.2304 -2.0915 33 1 3.4385 -5.0382 -1.4186 34 1 4.7245 -6.8608 -0.3450 35 1 4.6098 -7.1213 -2.1028 36 1 2.7392 -8.6954 -1.7666 37 1 4.7320 -9.7277 0.1030 38 1 6.3705 -11.6937 -3.8079 39 1 8.1315 -13.3702 -2.6902 40 1 8.0097 -13.0514 -0.0940 41 1 3.2029 -8.1676 1.2051 42 1 2.0417 -9.3269 0.5137 43 1 0.9275 -7.1946 1.1396 44 1 0.8536 -7.4738 -0.6167 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226017638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:32 Heat of formation + Delta-G solvation = -49.052398 kcal Electronic energy + Delta-G solvation = -26210.577749 eV Core-core repulsion = 22355.253225 eV Total energy + Delta-G solvation = -3855.324525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.23026 -40.93430 -40.16203 -38.93807 -36.30249 -35.75795 -33.37524 -32.97115 -31.88917 -31.84234 -30.22281 -28.56501 -26.42108 -24.60354 -24.25854 -23.00443 -21.42384 -21.36314 -21.02370 -20.92156 -19.87142 -19.74291 -17.76244 -17.41969 -16.96378 -16.64285 -16.45683 -16.27517 -16.12034 -15.58504 -15.37593 -15.20926 -14.98799 -14.75259 -14.56191 -14.35297 -14.26790 -13.79840 -13.54135 -13.49112 -13.20818 -13.18830 -12.96719 -12.80563 -12.44122 -12.36482 -12.21396 -12.12002 -11.89668 -11.63021 -11.44455 -11.20821 -10.35257 -10.16386 -9.98547 -9.95500 -9.21562 -9.18740 -8.46170 -5.94498 0.44470 1.37355 1.40912 1.53590 1.84133 1.98552 2.06548 2.24985 2.28313 2.34464 2.75687 3.20536 3.37940 3.65428 3.83509 3.90288 4.04207 4.17593 4.28259 4.34344 4.35692 4.41601 4.46239 4.50052 4.51809 4.55262 4.62215 4.73700 4.87833 4.95847 5.05237 5.08447 5.11637 5.24962 5.27544 5.39483 5.41321 5.74015 5.88321 5.92213 6.06962 6.23844 6.43073 6.61593 6.61843 7.09927 7.13874 7.57753 8.13839 8.71223 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.002118 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.770579 B =13215.455585 C =13656.511115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.330 4.330 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.614 6.614 12 C 0.057 3.943 13 N -0.530 5.530 14 C 0.061 3.939 15 C -0.110 4.110 16 C 0.152 3.848 17 N -0.709 5.709 18 C 0.585 3.415 19 O -0.578 6.578 20 C -0.083 4.083 21 C -0.130 4.130 22 C -0.231 4.231 23 C 0.048 3.952 24 N -0.526 5.526 25 H 0.431 0.569 26 C -0.109 4.109 27 C 0.054 3.946 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.411 0.589 38 H 0.132 0.868 39 H 0.160 0.840 40 H 0.215 0.785 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.363 -26.851 3.589 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.096 0.904 9 N -0.213 5.213 10 C 0.228 3.772 11 O -0.500 6.500 12 C -0.074 4.074 13 N -0.255 5.255 14 C -0.068 4.068 15 C -0.150 4.150 16 C 0.047 3.953 17 N -0.360 5.360 18 C 0.375 3.625 19 O -0.458 6.458 20 C -0.196 4.196 21 C -0.157 4.157 22 C -0.255 4.255 23 C -0.090 4.090 24 N -0.123 5.123 25 H 0.272 0.728 26 C -0.147 4.147 27 C -0.073 4.073 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.135 0.865 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.150 0.850 39 H 0.178 0.822 40 H 0.232 0.768 41 H 0.103 0.897 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.972 -26.305 3.355 27.690 hybrid contribution -0.668 1.234 -0.365 1.450 sum 7.304 -25.071 2.990 26.284 Atomic orbital electron populations 1.69670 1.06763 1.29218 1.50516 1.26025 0.96567 1.02370 0.96449 0.84940 0.77903 0.77012 0.78554 1.19825 1.19466 1.19809 1.19632 0.92626 0.84025 1.49726 0.90424 1.41943 1.09307 1.04699 1.65344 1.20821 0.88337 0.85985 0.82077 1.90464 1.15722 1.87759 1.56054 1.21733 0.93612 0.88475 1.03569 1.61521 1.25500 1.02820 1.35647 1.22006 0.95555 0.99722 0.89521 1.21783 0.97792 0.94019 1.01363 1.20962 0.88751 0.85783 0.99762 1.45764 1.41381 1.39872 1.08937 1.17417 0.80527 0.80221 0.84373 1.90826 1.62184 1.65780 1.27000 1.20167 1.05771 1.05890 0.87777 1.21538 0.98178 0.97662 0.98331 1.21223 1.04688 1.05277 0.94273 1.22754 0.94543 0.93654 0.98008 1.42016 1.31402 1.31133 1.07787 0.72843 1.21803 0.97658 0.99161 0.96092 1.22215 0.95529 0.87308 1.02295 0.91354 0.77027 0.86513 0.91826 0.95517 0.91962 0.91444 0.93105 0.90968 0.75294 0.85005 0.82226 0.76816 0.89691 0.87929 0.88057 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.05 13.05 21.66 0.28 -49.76 16 2 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 3 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.58 -29.76 5.29 -306.98 -1.62 -31.39 16 10 C 0.44 21.09 7.46 87.66 0.65 21.75 16 11 O -0.61 -34.07 13.90 -3.07 -0.04 -34.11 16 12 C 0.06 1.97 5.45 85.56 0.47 2.43 16 13 N -0.53 -16.75 4.40 -900.95 -3.96 -20.71 16 14 C 0.06 2.09 5.10 86.33 0.44 2.53 16 15 C -0.11 -3.27 5.67 30.65 0.17 -3.10 16 16 C 0.15 3.43 2.52 45.07 0.11 3.55 16 17 N -0.71 -13.19 5.08 -446.12 -2.26 -15.46 16 18 C 0.59 14.50 7.76 86.45 0.67 15.17 16 19 O -0.58 -19.78 16.54 -4.33 -0.07 -19.85 16 20 C -0.08 -1.64 7.06 40.35 0.28 -1.36 16 21 C -0.13 -2.67 10.65 22.57 0.24 -2.43 16 22 C -0.23 -3.16 10.81 22.01 0.24 -2.92 16 23 C 0.05 0.40 11.89 83.48 0.99 1.39 16 24 N -0.53 -5.44 5.99 -183.62 -1.10 -6.54 16 25 H 0.43 1.53 8.19 -92.71 -0.76 0.77 16 26 C -0.11 -1.86 5.57 30.65 0.17 -1.69 16 27 C 0.05 1.16 5.46 86.33 0.47 1.63 16 28 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.40 19.42 7.90 -92.71 -0.73 18.68 16 30 H 0.12 3.39 7.99 -2.38 -0.02 3.37 16 31 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 32 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 2.72 5.78 -2.39 -0.01 2.70 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.91 7.57 -2.39 -0.02 1.89 16 37 H 0.41 4.50 7.73 -92.71 -0.72 3.78 16 38 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 39 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.22 -0.13 8.06 -2.91 -0.02 -0.15 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.10 1.79 8.01 -2.39 -0.02 1.77 16 44 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -79.59 365.49 -1.71 -81.30 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -1.16 Total: 32.49 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.20 Total: 18.51 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -8.67 Total: -123.86 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -0.11 Total: -53.96 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -79.59 -1.71 -81.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226017638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.251 kcal (2) G-P(sol) polarization free energy of solvation -79.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds