Wall clock time and date at job start Fri Apr 10 2020 14:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 120.00116 * 2 1 4 4 H 1.48495 * 109.47185 * 269.99679 * 3 2 1 5 5 H 1.48499 * 109.47429 * 29.99733 * 3 2 1 6 6 H 1.48499 * 109.47359 * 149.99677 * 3 2 1 7 7 C 1.38943 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00317 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00296 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00283 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99836 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99960 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.46999 * 179.97438 * 12 10 9 14 14 C 1.47447 * 111.00055 * 55.56549 * 13 12 10 15 15 C 1.54316 * 107.23744 * 123.25451 * 14 13 12 16 16 C 1.55261 * 103.08368 * 22.20539 * 15 14 13 17 17 C 1.47848 * 111.00052 * 176.40178 * 13 12 10 18 18 H 1.09001 * 110.37477 * 332.58091 * 17 13 12 19 19 C 1.53006 * 110.37058 * 94.80873 * 17 13 12 20 20 N 1.46497 * 109.47346 * 298.45215 * 19 17 13 21 21 C 1.34774 * 120.00039 * 173.45842 * 20 19 17 22 22 O 1.21687 * 120.00060 * 359.97438 * 21 20 19 23 23 C 1.46679 * 119.99978 * 179.97438 * 21 20 19 24 24 C 1.37868 * 126.23641 * 179.97438 * 23 21 20 25 25 C 1.39830 * 107.08711 * 180.02562 * 24 23 21 26 26 C 1.35445 * 107.86716 * 0.02562 * 25 24 23 27 27 N 1.35532 * 108.87368 * 0.02562 * 26 25 24 28 28 H 0.96997 * 125.68458 * 180.26770 * 27 26 25 29 29 H 0.97006 * 119.99715 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99705 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47388 * 60.00553 * 12 10 9 32 32 H 1.09002 * 109.47423 * 300.00215 * 12 10 9 33 33 H 1.09001 * 109.88742 * 242.66385 * 14 13 12 34 34 H 1.09002 * 109.88244 * 3.68461 * 14 13 12 35 35 H 1.08999 * 110.70495 * 140.66650 * 15 14 13 36 36 H 1.08997 * 110.70348 * 263.72823 * 15 14 13 37 37 H 1.09002 * 111.08929 * 206.38404 * 16 15 14 38 38 H 1.09002 * 110.94579 * 82.52687 * 16 15 14 39 39 H 1.09002 * 109.47209 * 178.44674 * 19 17 13 40 40 H 1.09004 * 109.46688 * 58.45030 * 19 17 13 41 41 H 0.97000 * 119.99523 * 353.45011 * 20 19 17 42 42 H 1.07997 * 126.45367 * 0.05039 * 24 23 21 43 43 H 1.08006 * 126.06793 * 179.97438 * 25 24 23 44 44 H 1.08008 * 125.56618 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8629 0.0000 13 7 2.1982 -5.9795 -0.0005 14 6 3.1332 -5.8759 1.1348 15 6 3.0163 -7.1844 1.9444 16 6 2.4400 -8.1878 0.9092 17 6 1.4954 -7.2774 0.0855 18 1 0.5406 -7.1588 0.5978 19 6 1.2797 -7.8600 -1.3128 20 7 0.4421 -6.9495 -2.0973 21 6 0.2267 -7.1907 -3.4057 22 8 0.7284 -8.1647 -3.9354 23 6 -0.6123 -6.2794 -4.1911 24 6 -0.9161 -6.4015 -5.5303 25 6 -1.7382 -5.3212 -5.8654 26 6 -1.9180 -4.5742 -4.7499 27 7 -1.2383 -5.1451 -3.7257 28 1 -1.2031 -4.8128 -2.8151 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3906 -0.0002 31 1 0.6174 -4.9205 -0.8903 32 1 0.6166 -4.9209 0.8897 33 1 4.1522 -5.7575 0.7664 34 1 2.8640 -5.0247 1.7603 35 1 3.9960 -7.5102 2.2938 36 1 2.3317 -7.0587 2.7832 37 1 1.8825 -8.9838 1.4030 38 1 3.2314 -8.5984 0.2822 39 1 0.7858 -8.8283 -1.2308 40 1 2.2432 -7.9843 -1.8071 41 1 0.0425 -6.1730 -1.6751 42 1 -0.5822 -7.1843 -6.1952 43 1 -2.1552 -5.1180 -6.8407 44 1 -2.5068 -3.6710 -4.6869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753098548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:41 Heat of formation + Delta-G solvation = -14.709829 kcal Electronic energy + Delta-G solvation = -27286.558782 eV Core-core repulsion = 23432.723463 eV Total energy + Delta-G solvation = -3853.835319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25794 -39.83581 -38.74947 -37.64166 -34.70289 -34.05879 -32.06458 -31.28539 -31.18139 -30.35757 -28.89221 -26.87748 -25.27206 -24.23527 -22.44057 -21.31981 -20.59773 -20.35645 -20.00744 -19.32533 -18.75634 -17.96757 -16.60993 -15.99194 -15.95926 -15.54235 -15.23393 -14.99346 -14.63356 -14.32414 -14.10343 -13.91651 -13.88179 -13.60674 -13.40332 -12.99496 -12.65264 -12.56541 -12.30812 -12.22647 -12.13703 -11.80735 -11.55916 -11.33055 -11.25566 -11.08871 -10.94121 -10.61320 -10.47385 -10.32257 -10.06044 -9.59932 -9.13096 -9.03780 -8.50920 -8.24166 -8.09284 -8.06159 -6.53386 -3.94095 1.48856 2.74733 3.04791 3.09444 3.14270 3.20239 3.25475 3.45960 3.73999 3.86668 4.12867 4.50641 4.64344 4.80005 4.91387 4.98983 5.06486 5.11815 5.14329 5.22854 5.32403 5.41583 5.43982 5.51575 5.56431 5.65890 5.76901 5.81668 5.92499 6.01944 6.04523 6.11640 6.14953 6.23385 6.36695 6.52467 6.67333 6.88935 7.14813 7.17078 7.29367 7.44882 7.48396 7.93647 8.17987 8.48100 9.06519 9.39928 9.91117 10.64177 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008533 B = 0.004691 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3280.454203 B = 5967.520389 C = 8820.033458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.573 6.573 12 C 0.042 3.958 13 N -0.501 5.501 14 C 0.063 3.937 15 C -0.147 4.147 16 C -0.117 4.117 17 C 0.053 3.947 18 H 0.059 0.941 19 C 0.138 3.862 20 N -0.725 5.725 21 C 0.590 3.410 22 O -0.535 6.535 23 C -0.059 4.059 24 C -0.108 4.108 25 C -0.216 4.216 26 C 0.028 3.972 27 N -0.537 5.537 28 H 0.416 0.584 29 H 0.272 0.728 30 H 0.390 0.610 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.392 0.608 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -12.699 -1.313 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.457 6.457 12 C -0.090 4.090 13 N -0.226 5.226 14 C -0.064 4.064 15 C -0.186 4.186 16 C -0.155 4.155 17 C -0.056 4.056 18 H 0.077 0.923 19 C 0.015 3.985 20 N -0.378 5.378 21 C 0.378 3.622 22 O -0.412 6.412 23 C -0.172 4.172 24 C -0.135 4.135 25 C -0.240 4.240 26 C -0.108 4.108 27 N -0.133 5.133 28 H 0.254 0.746 29 H 0.082 0.918 30 H 0.223 0.777 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.229 0.771 42 H 0.164 0.836 43 H 0.160 0.840 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.410 -13.180 -1.965 14.036 hybrid contribution -1.007 1.657 1.338 2.356 sum -5.416 -11.523 -0.627 12.748 Atomic orbital electron populations 1.69598 1.05942 1.28268 1.50518 1.25247 0.95646 0.99740 0.97122 0.85856 0.79266 0.80704 0.78504 1.20315 1.20881 1.19381 1.19696 0.93395 0.82096 1.47667 0.87875 1.41840 1.09016 1.04601 1.64408 1.19630 0.88497 0.84440 0.84992 1.90550 1.13493 1.86736 1.54877 1.22151 0.94577 0.92164 1.00132 1.63272 1.15703 0.99444 1.44197 1.22682 0.98314 0.95484 0.89926 1.22930 1.01475 0.96211 0.97936 1.22644 0.98692 0.97064 0.97119 1.22914 0.97030 0.90864 0.94772 0.92316 1.21401 0.95545 0.91608 0.89981 1.46052 1.52313 1.29584 1.09842 1.17053 0.79781 0.84254 0.81134 1.90813 1.50783 1.28938 1.70683 1.20456 1.07768 0.93176 0.95759 1.21286 0.99674 0.99766 0.92750 1.20883 1.06312 0.98032 0.98815 1.22108 1.00675 1.00469 0.87545 1.42082 1.38815 1.20648 1.11746 0.74634 0.91817 0.77700 0.90951 0.93223 0.89766 0.92090 0.90687 0.91808 0.90699 0.90104 0.91298 0.90062 0.77128 0.83633 0.83973 0.81081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.29 13.05 55.50 0.72 -22.57 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.42 29.55 -169.99 -5.02 15.39 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.30 -7.98 9.68 -14.93 -0.14 -8.12 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.32 5.29 -10.97 -0.06 -13.38 16 10 C 0.44 9.72 7.10 -10.99 -0.08 9.64 16 11 O -0.57 -14.73 13.97 5.55 0.08 -14.65 16 12 C 0.04 0.68 5.03 -4.98 -0.03 0.65 16 13 N -0.50 -7.74 4.70 -224.81 -1.06 -8.79 16 14 C 0.06 0.99 5.14 -2.83 -0.01 0.98 16 15 C -0.15 -1.66 6.94 -24.84 -0.17 -1.84 16 16 C -0.12 -1.18 6.51 -24.53 -0.16 -1.34 16 17 C 0.05 0.62 2.68 -66.18 -0.18 0.45 16 18 H 0.06 0.63 7.72 -51.93 -0.40 0.23 16 19 C 0.14 1.71 5.39 -4.04 -0.02 1.69 16 20 N -0.72 -9.45 5.34 -61.62 -0.33 -9.78 16 21 C 0.59 8.97 7.79 -12.85 -0.10 8.87 16 22 O -0.54 -9.67 16.86 5.20 0.09 -9.58 16 23 C -0.06 -0.81 7.06 -81.98 -0.58 -1.39 16 24 C -0.11 -1.44 10.65 -39.12 -0.42 -1.85 16 25 C -0.22 -2.45 10.81 -39.98 -0.43 -2.88 16 26 C 0.03 0.30 11.89 -16.91 -0.20 0.10 16 27 N -0.54 -6.18 5.99 -9.39 -0.06 -6.24 16 28 H 0.42 4.04 8.19 -40.82 -0.33 3.71 16 29 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.39 8.69 7.90 -40.82 -0.32 8.37 16 31 H 0.07 1.03 5.35 -51.93 -0.28 0.75 16 32 H 0.05 0.72 8.00 -51.93 -0.42 0.30 16 33 H 0.08 1.48 8.00 -51.93 -0.42 1.07 16 34 H 0.06 1.09 6.61 -51.93 -0.34 0.74 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 41 H 0.39 4.59 4.61 -40.82 -0.19 4.40 16 42 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 44 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -32.85 363.00 -8.79 -41.64 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -6.01 Total: 17.01 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -2.62 Total: 5.48 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.78 Total: -60.76 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: 0.17 Total: -24.23 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.85 -8.79 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753098548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.926 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds