Wall clock time and date at job start Fri Apr 10 2020 14:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 120.00116 * 2 1 4 4 H 1.48495 * 109.47185 * 269.99679 * 3 2 1 5 5 H 1.48499 * 109.47429 * 29.99733 * 3 2 1 6 6 H 1.48499 * 109.47359 * 149.99677 * 3 2 1 7 7 C 1.38943 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00317 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00296 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00283 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99836 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99960 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.46999 * 179.97438 * 12 10 9 14 14 C 1.47447 * 111.00055 * 55.56549 * 13 12 10 15 15 C 1.54316 * 107.23744 * 123.25451 * 14 13 12 16 16 C 1.55261 * 103.08368 * 22.20539 * 15 14 13 17 17 C 1.47848 * 111.00052 * 176.40178 * 13 12 10 18 18 H 1.09001 * 110.37477 * 332.58091 * 17 13 12 19 19 C 1.53006 * 110.37058 * 94.80873 * 17 13 12 20 20 N 1.46497 * 109.47346 * 298.45215 * 19 17 13 21 21 C 1.34774 * 120.00039 * 173.45842 * 20 19 17 22 22 O 1.21687 * 120.00060 * 359.97438 * 21 20 19 23 23 C 1.46679 * 119.99978 * 179.97438 * 21 20 19 24 24 C 1.37868 * 126.23641 * 179.97438 * 23 21 20 25 25 C 1.39830 * 107.08711 * 180.02562 * 24 23 21 26 26 C 1.35445 * 107.86716 * 0.02562 * 25 24 23 27 27 N 1.35532 * 108.87368 * 0.02562 * 26 25 24 28 28 H 0.96997 * 125.68458 * 180.26770 * 27 26 25 29 29 H 0.97006 * 119.99715 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99705 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47388 * 60.00553 * 12 10 9 32 32 H 1.09002 * 109.47423 * 300.00215 * 12 10 9 33 33 H 1.09001 * 109.88742 * 242.66385 * 14 13 12 34 34 H 1.09002 * 109.88244 * 3.68461 * 14 13 12 35 35 H 1.08999 * 110.70495 * 140.66650 * 15 14 13 36 36 H 1.08997 * 110.70348 * 263.72823 * 15 14 13 37 37 H 1.09002 * 111.08929 * 206.38404 * 16 15 14 38 38 H 1.09002 * 110.94579 * 82.52687 * 16 15 14 39 39 H 1.09002 * 109.47209 * 178.44674 * 19 17 13 40 40 H 1.09004 * 109.46688 * 58.45030 * 19 17 13 41 41 H 0.97000 * 119.99523 * 353.45011 * 20 19 17 42 42 H 1.07997 * 126.45367 * 0.05039 * 24 23 21 43 43 H 1.08006 * 126.06793 * 179.97438 * 25 24 23 44 44 H 1.08008 * 125.56618 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8629 0.0000 13 7 2.1982 -5.9795 -0.0005 14 6 3.1332 -5.8759 1.1348 15 6 3.0163 -7.1844 1.9444 16 6 2.4400 -8.1878 0.9092 17 6 1.4954 -7.2774 0.0855 18 1 0.5406 -7.1588 0.5978 19 6 1.2797 -7.8600 -1.3128 20 7 0.4421 -6.9495 -2.0973 21 6 0.2267 -7.1907 -3.4057 22 8 0.7284 -8.1647 -3.9354 23 6 -0.6123 -6.2794 -4.1911 24 6 -0.9161 -6.4015 -5.5303 25 6 -1.7382 -5.3212 -5.8654 26 6 -1.9180 -4.5742 -4.7499 27 7 -1.2383 -5.1451 -3.7257 28 1 -1.2031 -4.8128 -2.8151 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3906 -0.0002 31 1 0.6174 -4.9205 -0.8903 32 1 0.6166 -4.9209 0.8897 33 1 4.1522 -5.7575 0.7664 34 1 2.8640 -5.0247 1.7603 35 1 3.9960 -7.5102 2.2938 36 1 2.3317 -7.0587 2.7832 37 1 1.8825 -8.9838 1.4030 38 1 3.2314 -8.5984 0.2822 39 1 0.7858 -8.8283 -1.2308 40 1 2.2432 -7.9843 -1.8071 41 1 0.0425 -6.1730 -1.6751 42 1 -0.5822 -7.1843 -6.1952 43 1 -2.1552 -5.1180 -6.8407 44 1 -2.5068 -3.6710 -4.6869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753098548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:41 Heat of formation + Delta-G solvation = -40.118968 kcal Electronic energy + Delta-G solvation = -27287.660605 eV Core-core repulsion = 23432.723463 eV Total energy + Delta-G solvation = -3854.937142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.21595 -41.07243 -40.04668 -39.13729 -36.07384 -35.72598 -33.49102 -32.99388 -32.12837 -31.39509 -29.86094 -28.36262 -26.51683 -25.78610 -23.53294 -22.33255 -21.61565 -21.37056 -21.03320 -20.93379 -19.95400 -19.72579 -17.81872 -17.47855 -17.06616 -16.75134 -16.54000 -16.35467 -16.11248 -15.72087 -15.60834 -15.08344 -14.95171 -14.66556 -14.57258 -14.37035 -13.87838 -13.58531 -13.55423 -13.50247 -13.19600 -13.17496 -12.98508 -12.88783 -12.44329 -12.34910 -12.22647 -12.15888 -12.00626 -11.59367 -11.48327 -11.23731 -10.34519 -10.20024 -10.02303 -9.96188 -9.29039 -9.18253 -8.49583 -5.97085 0.45939 1.35162 1.40830 1.51750 1.84092 1.96596 2.06534 2.23200 2.25785 2.37338 2.71558 3.16790 3.20660 3.67786 3.70985 3.79279 4.00095 4.10315 4.20145 4.24274 4.31020 4.35753 4.41211 4.42838 4.52516 4.58710 4.64596 4.78960 4.92222 4.99888 5.09492 5.10989 5.19518 5.25801 5.32392 5.37444 5.39439 5.74215 5.85499 5.94810 5.98905 6.10319 6.36090 6.53622 6.57634 7.06691 7.10799 7.52004 8.08381 8.67323 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008533 B = 0.004691 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3280.454203 B = 5967.520389 C = 8820.033458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.986 3.014 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.332 4.332 8 H 0.075 0.925 9 N -0.568 5.568 10 C 0.436 3.564 11 O -0.614 6.614 12 C 0.055 3.945 13 N -0.523 5.523 14 C 0.064 3.936 15 C -0.136 4.136 16 C -0.108 4.108 17 C 0.057 3.943 18 H 0.083 0.917 19 C 0.139 3.861 20 N -0.717 5.717 21 C 0.586 3.414 22 O -0.574 6.574 23 C -0.087 4.087 24 C -0.123 4.123 25 C -0.225 4.225 26 C 0.038 3.962 27 N -0.533 5.533 28 H 0.424 0.576 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.032 0.968 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.399 0.601 42 H 0.142 0.858 43 H 0.165 0.835 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.685 -12.904 -0.707 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.206 4.206 3 Si 0.810 3.190 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.201 1.201 7 C -0.461 4.461 8 H 0.093 0.907 9 N -0.206 5.206 10 C 0.224 3.776 11 O -0.500 6.500 12 C -0.077 4.077 13 N -0.249 5.249 14 C -0.063 4.063 15 C -0.174 4.174 16 C -0.147 4.147 17 C -0.051 4.051 18 H 0.101 0.899 19 C 0.015 3.985 20 N -0.369 5.369 21 C 0.375 3.625 22 O -0.454 6.454 23 C -0.200 4.200 24 C -0.150 4.150 25 C -0.248 4.248 26 C -0.099 4.099 27 N -0.129 5.129 28 H 0.263 0.737 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.236 0.764 42 H 0.160 0.840 43 H 0.182 0.818 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.333 -13.384 -1.327 14.866 hybrid contribution -0.411 1.729 1.113 2.097 sum -6.744 -11.655 -0.213 13.467 Atomic orbital electron populations 1.69637 1.06518 1.29259 1.50132 1.25896 0.96516 1.01975 0.96261 0.85025 0.77967 0.77401 0.78573 1.19849 1.19427 1.20098 1.19579 0.92552 0.84007 1.50002 0.90719 1.41851 1.09225 1.04471 1.65064 1.20674 0.88370 0.85929 0.82672 1.90528 1.15725 1.87685 1.56064 1.22021 0.94211 0.89087 1.02363 1.63182 1.16321 1.00738 1.44614 1.22516 0.96700 0.97026 0.90078 1.22856 1.02739 0.93843 0.97960 1.22675 0.98502 0.97093 0.96408 1.23005 0.98144 0.89122 0.94792 0.89946 1.21461 0.94606 0.92480 0.89903 1.46007 1.51843 1.29727 1.09339 1.17292 0.79569 0.84002 0.81647 1.90779 1.52532 1.30628 1.71493 1.20361 1.09173 0.94341 0.96089 1.21520 1.00173 1.00497 0.92837 1.21209 1.06004 0.97375 1.00218 1.22725 0.99530 1.00796 0.86847 1.42102 1.38428 1.19953 1.12427 0.73722 0.91256 0.76910 0.88735 0.90582 0.93033 0.94949 0.89609 0.90317 0.87346 0.90373 0.89308 0.92345 0.76365 0.84021 0.81780 0.77841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.42 13.05 21.66 0.28 -46.14 16 2 C -0.01 -0.31 5.50 84.92 0.47 0.16 16 3 Si 0.99 41.63 29.55 68.60 2.03 43.66 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.33 -18.09 9.68 84.04 0.81 -17.28 16 8 H 0.07 4.43 7.16 -2.91 -0.02 4.41 16 9 N -0.57 -27.28 5.29 -306.99 -1.62 -28.90 16 10 C 0.44 19.63 7.10 87.66 0.62 20.25 16 11 O -0.61 -32.88 13.97 -3.06 -0.04 -32.92 16 12 C 0.05 1.71 5.03 85.56 0.43 2.14 16 13 N -0.52 -15.75 4.70 -865.16 -4.07 -19.81 16 14 C 0.06 2.03 5.14 86.64 0.45 2.48 16 15 C -0.14 -2.79 6.94 31.82 0.22 -2.57 16 16 C -0.11 -1.86 6.51 32.02 0.21 -1.65 16 17 C 0.06 1.21 2.68 45.39 0.12 1.33 16 18 H 0.08 1.41 7.72 -2.39 -0.02 1.40 16 19 C 0.14 3.23 5.39 86.38 0.47 3.69 16 20 N -0.72 -17.88 5.34 -467.08 -2.49 -20.38 16 21 C 0.59 17.77 7.79 86.45 0.67 18.44 16 22 O -0.57 -21.16 16.86 -4.31 -0.07 -21.24 16 23 C -0.09 -2.37 7.06 40.35 0.28 -2.09 16 24 C -0.12 -3.24 10.65 22.57 0.24 -3.00 16 25 C -0.22 -4.70 10.81 22.01 0.24 -4.46 16 26 C 0.04 0.72 11.89 83.48 0.99 1.71 16 27 N -0.53 -11.40 5.99 -183.62 -1.10 -12.50 16 28 H 0.42 7.41 8.19 -92.71 -0.76 6.65 16 29 H 0.28 13.25 8.31 -92.70 -0.77 12.48 16 30 H 0.40 17.59 7.90 -92.71 -0.73 16.86 16 31 H 0.09 2.51 5.35 -2.39 -0.01 2.50 16 32 H 0.08 2.01 8.00 -2.39 -0.02 1.99 16 33 H 0.05 1.92 8.00 -2.39 -0.02 1.90 16 34 H 0.03 1.18 6.61 -2.39 -0.02 1.16 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.41 8.06 -2.39 -0.02 1.39 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 1.65 8.11 -2.39 -0.02 1.63 16 41 H 0.40 8.63 4.61 -92.71 -0.43 8.20 16 42 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 43 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.20 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -74.02 363.00 -1.73 -75.75 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: -0.86 Total: 43.32 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 6.22 Total: 19.16 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -9.00 Total: -127.73 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -0.12 Total: -54.16 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -74.02 -1.73 -75.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753098548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.633 kcal (2) G-P(sol) polarization free energy of solvation -74.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds