Wall clock time and date at job start Fri Apr 10 2020 14:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48501 * 109.46894 * 240.00039 * 3 2 1 5 5 H 1.48495 * 109.47025 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47257 * 119.99979 * 3 2 1 7 7 C 1.38946 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00173 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00076 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00200 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99974 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47522 * 180.02562 * 12 10 9 14 14 C 1.47844 * 110.99626 * 55.89607 * 13 12 10 15 15 C 1.54906 * 104.79563 * 146.36744 * 14 13 12 16 16 C 1.55397 * 101.74147 * 323.02337 * 15 14 13 17 17 C 1.47440 * 111.00238 * 176.74257 * 13 12 10 18 18 H 1.08994 * 109.88707 * 117.17376 * 17 13 12 19 19 C 1.52995 * 109.88969 * 356.14905 * 17 13 12 20 20 N 1.46499 * 109.47024 * 176.35679 * 19 17 13 21 21 C 1.34779 * 119.99789 * 174.97374 * 20 19 17 22 22 O 1.21695 * 119.99952 * 359.97438 * 21 20 19 23 23 C 1.46683 * 119.99811 * 179.97438 * 21 20 19 24 24 C 1.37872 * 126.23062 * 180.02562 * 23 21 20 25 25 C 1.39841 * 107.08405 * 179.97438 * 24 23 21 26 26 C 1.35458 * 107.86195 * 359.97438 * 25 24 23 27 27 N 1.35529 * 108.87271 * 0.02562 * 26 25 24 28 28 H 0.97003 * 125.67835 * 180.02562 * 27 26 25 29 29 H 0.96993 * 120.00454 * 0.02562 * 1 2 3 30 30 H 0.97007 * 119.99774 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47205 * 60.00079 * 12 10 9 32 32 H 1.09005 * 109.47328 * 300.00745 * 12 10 9 33 33 H 1.09005 * 110.37377 * 265.19410 * 14 13 12 34 34 H 1.08995 * 110.37613 * 27.42482 * 14 13 12 35 35 H 1.09008 * 110.98667 * 81.02105 * 15 14 13 36 36 H 1.08998 * 110.99470 * 204.80134 * 15 14 13 37 37 H 1.09007 * 110.67403 * 277.17643 * 16 15 14 38 38 H 1.08997 * 110.85223 * 153.86246 * 16 15 14 39 39 H 1.09000 * 109.47299 * 56.34879 * 19 17 13 40 40 H 1.09007 * 109.46831 * 296.35326 * 19 17 13 41 41 H 0.96993 * 119.99877 * 354.96984 * 20 19 17 42 42 H 1.08002 * 126.45919 * 0.23762 * 24 23 21 43 43 H 1.07995 * 126.06522 * 179.97438 * 25 24 23 44 44 H 1.07994 * 125.55887 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6966 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1986 -5.9795 -0.0004 14 6 3.1302 -5.8792 1.1432 15 6 3.4234 -7.3464 1.5444 16 6 2.0418 -8.0194 1.3141 17 6 1.4974 -7.2741 0.0773 18 1 1.6937 -7.8567 -0.8228 19 6 -0.0073 -7.0428 0.2294 20 7 -0.7031 -8.3320 0.2183 21 6 -2.0314 -8.3827 0.4406 22 8 -2.6527 -7.3576 0.6510 23 6 -2.7282 -9.6734 0.4289 24 6 -4.0761 -9.8737 0.6389 25 6 -4.3075 -11.2492 0.5385 26 6 -3.1233 -11.8515 0.2743 27 7 -2.1558 -10.9051 0.2054 28 1 -1.2162 -11.0683 0.0276 29 1 -0.4850 0.8399 -0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6177 -4.9205 -0.8914 32 1 0.6169 -4.9209 0.8886 33 1 4.0495 -5.3775 0.8410 34 1 2.6610 -5.3447 1.9692 35 1 4.1818 -7.7845 0.8954 36 1 3.7220 -7.4130 2.5906 37 1 1.3905 -7.8653 2.1744 38 1 2.1584 -9.0824 1.1031 39 1 -0.3659 -6.4291 -0.5969 40 1 -0.2028 -6.5325 1.1726 41 1 -0.2078 -9.1489 0.0509 42 1 -4.8148 -9.1116 0.8386 43 1 -5.2611 -11.7434 0.6516 44 1 -2.9745 -12.9129 0.1411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753098560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:43 Heat of formation + Delta-G solvation = -10.542651 kcal Electronic energy + Delta-G solvation = -26568.802645 eV Core-core repulsion = 22715.148029 eV Total energy + Delta-G solvation = -3853.654617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55630 -40.04200 -38.88853 -37.56592 -34.85770 -33.89751 -32.12183 -31.45928 -31.13033 -30.42844 -29.01662 -26.71781 -25.33300 -24.24551 -22.76617 -21.28706 -20.81190 -20.52296 -20.24901 -19.33703 -18.64717 -17.77284 -16.88019 -16.12292 -15.79291 -15.49295 -15.25194 -15.10758 -14.58933 -14.39327 -14.25320 -14.12725 -13.83016 -13.80724 -13.52239 -13.01204 -12.86981 -12.68181 -12.56038 -12.38961 -11.98141 -11.77119 -11.50130 -11.18624 -11.05027 -10.96141 -10.87696 -10.63254 -10.41415 -10.30621 -10.19161 -9.46895 -9.35299 -9.32110 -8.55253 -8.39956 -7.96919 -7.88718 -6.38718 -3.80049 1.19866 2.44826 2.72322 2.87230 3.20178 3.21717 3.27604 3.31634 3.90842 4.02900 4.25146 4.43009 4.57164 4.63975 4.70041 4.76942 5.03762 5.09038 5.13243 5.16638 5.23676 5.29061 5.39880 5.62005 5.66023 5.72491 5.75510 5.76184 5.86472 5.87369 5.95641 6.03256 6.17995 6.26279 6.31672 6.37034 6.58542 6.59264 6.97919 7.18630 7.23407 7.27094 7.57267 7.96970 8.07693 8.63507 9.19824 9.56290 10.07488 10.78763 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.002687 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.167429 B =10417.314881 C =11892.928255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.442 3.558 11 O -0.582 6.582 12 C 0.030 3.970 13 N -0.494 5.494 14 C 0.055 3.945 15 C -0.133 4.133 16 C -0.139 4.139 17 C 0.061 3.939 18 H 0.089 0.911 19 C 0.100 3.900 20 N -0.727 5.727 21 C 0.585 3.415 22 O -0.522 6.522 23 C -0.055 4.055 24 C -0.107 4.107 25 C -0.212 4.212 26 C 0.020 3.980 27 N -0.541 5.541 28 H 0.415 0.585 29 H 0.272 0.728 30 H 0.393 0.607 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.392 0.608 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.176 -25.460 1.612 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.227 3.773 11 O -0.466 6.466 12 C -0.101 4.101 13 N -0.219 5.219 14 C -0.072 4.072 15 C -0.171 4.171 16 C -0.178 4.178 17 C -0.048 4.048 18 H 0.107 0.893 19 C -0.024 4.024 20 N -0.379 5.379 21 C 0.372 3.628 22 O -0.397 6.397 23 C -0.167 4.167 24 C -0.133 4.133 25 C -0.237 4.237 26 C -0.116 4.116 27 N -0.137 5.137 28 H 0.252 0.748 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.225 0.775 42 H 0.166 0.834 43 H 0.161 0.839 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.492 -24.423 1.269 24.704 hybrid contribution -0.136 0.264 0.531 0.608 sum -3.629 -24.159 1.800 24.496 Atomic orbital electron populations 1.69608 1.05927 1.28318 1.50224 1.25275 0.95627 0.99734 0.97292 0.85919 0.78754 0.80508 0.79031 1.19890 1.20972 1.19938 1.19637 0.93295 0.82186 1.47856 0.87962 1.41850 1.09259 1.04554 1.64093 1.19676 0.88351 0.84587 0.84689 1.90487 1.13635 1.86917 1.55607 1.22225 0.94725 0.91331 1.01802 1.63607 1.15597 0.99209 1.43459 1.23098 0.98497 0.94778 0.90858 1.22830 0.96480 0.96456 1.01322 1.22946 0.97661 0.99450 0.97735 1.22746 0.90469 0.92860 0.98721 0.89291 1.22230 0.91940 0.84765 1.03462 1.45821 1.08012 1.10273 1.73758 1.17089 0.81474 0.87219 0.76999 1.90897 1.66141 1.33881 1.48785 1.20490 0.94364 0.84599 1.17289 1.21387 0.93353 0.96620 1.01957 1.20935 0.98085 0.93896 1.10735 1.22042 0.88345 0.94660 1.06513 1.42029 1.10302 1.06144 1.55273 0.74793 0.91761 0.77390 0.88968 0.92797 0.87854 0.93940 0.90788 0.91060 0.91292 0.91188 0.90116 0.90528 0.77481 0.83388 0.83871 0.81206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.01 13.05 55.50 0.72 -24.28 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.56 -14.50 5.29 -10.96 -0.06 -14.55 16 10 C 0.44 10.50 7.44 -10.99 -0.08 10.42 16 11 O -0.58 -15.47 13.62 5.55 0.08 -15.39 16 12 C 0.03 0.55 4.21 -4.98 -0.02 0.53 16 13 N -0.49 -8.01 5.10 -224.79 -1.15 -9.15 16 14 C 0.05 0.89 5.20 -2.30 -0.01 0.87 16 15 C -0.13 -1.53 7.08 -24.45 -0.17 -1.71 16 16 C -0.14 -1.37 6.17 -24.77 -0.15 -1.53 16 17 C 0.06 0.72 3.49 -66.73 -0.23 0.48 16 18 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 19 C 0.10 1.22 3.71 -4.04 -0.02 1.21 16 20 N -0.73 -7.19 5.34 -61.62 -0.33 -7.51 16 21 C 0.59 7.37 7.79 -12.85 -0.10 7.27 16 22 O -0.52 -8.91 16.88 5.19 0.09 -8.82 16 23 C -0.05 -0.56 7.06 -81.98 -0.58 -1.14 16 24 C -0.11 -1.11 10.65 -39.12 -0.42 -1.53 16 25 C -0.21 -1.66 10.81 -39.97 -0.43 -2.09 16 26 C 0.02 0.12 11.89 -16.91 -0.20 -0.08 16 27 N -0.54 -3.46 5.99 -9.39 -0.06 -3.51 16 28 H 0.42 1.34 8.19 -40.82 -0.33 1.01 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 30 H 0.39 9.85 7.90 -40.82 -0.32 9.53 16 31 H 0.09 1.57 6.84 -51.93 -0.36 1.21 16 32 H 0.05 0.93 6.40 -51.93 -0.33 0.60 16 33 H 0.10 1.97 6.85 -51.93 -0.36 1.61 16 34 H 0.04 0.74 7.73 -51.93 -0.40 0.34 16 35 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 1.10 6.44 -51.93 -0.33 0.77 16 40 H 0.08 1.07 6.81 -51.92 -0.35 0.72 16 41 H 0.39 2.52 7.50 -40.82 -0.31 2.22 16 42 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.17 0.41 8.06 -52.49 -0.42 -0.02 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -34.91 361.48 -8.91 -43.82 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -5.97 Total: 13.02 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.66 Total: 4.64 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.87 Total: -59.02 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.16 Total: -24.21 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.91 -8.91 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753098560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.275 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds