Wall clock time and date at job start Fri Apr 10 2020 14:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48501 * 109.46894 * 240.00039 * 3 2 1 5 5 H 1.48495 * 109.47025 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47257 * 119.99979 * 3 2 1 7 7 C 1.38946 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00173 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00076 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00200 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99974 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47522 * 180.02562 * 12 10 9 14 14 C 1.47844 * 110.99626 * 55.89607 * 13 12 10 15 15 C 1.54906 * 104.79563 * 146.36744 * 14 13 12 16 16 C 1.55397 * 101.74147 * 323.02337 * 15 14 13 17 17 C 1.47440 * 111.00238 * 176.74257 * 13 12 10 18 18 H 1.08994 * 109.88707 * 117.17376 * 17 13 12 19 19 C 1.52995 * 109.88969 * 356.14905 * 17 13 12 20 20 N 1.46499 * 109.47024 * 176.35679 * 19 17 13 21 21 C 1.34779 * 119.99789 * 174.97374 * 20 19 17 22 22 O 1.21695 * 119.99952 * 359.97438 * 21 20 19 23 23 C 1.46683 * 119.99811 * 179.97438 * 21 20 19 24 24 C 1.37872 * 126.23062 * 180.02562 * 23 21 20 25 25 C 1.39841 * 107.08405 * 179.97438 * 24 23 21 26 26 C 1.35458 * 107.86195 * 359.97438 * 25 24 23 27 27 N 1.35529 * 108.87271 * 0.02562 * 26 25 24 28 28 H 0.97003 * 125.67835 * 180.02562 * 27 26 25 29 29 H 0.96993 * 120.00454 * 0.02562 * 1 2 3 30 30 H 0.97007 * 119.99774 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47205 * 60.00079 * 12 10 9 32 32 H 1.09005 * 109.47328 * 300.00745 * 12 10 9 33 33 H 1.09005 * 110.37377 * 265.19410 * 14 13 12 34 34 H 1.08995 * 110.37613 * 27.42482 * 14 13 12 35 35 H 1.09008 * 110.98667 * 81.02105 * 15 14 13 36 36 H 1.08998 * 110.99470 * 204.80134 * 15 14 13 37 37 H 1.09007 * 110.67403 * 277.17643 * 16 15 14 38 38 H 1.08997 * 110.85223 * 153.86246 * 16 15 14 39 39 H 1.09000 * 109.47299 * 56.34879 * 19 17 13 40 40 H 1.09007 * 109.46831 * 296.35326 * 19 17 13 41 41 H 0.96993 * 119.99877 * 354.96984 * 20 19 17 42 42 H 1.08002 * 126.45919 * 0.23762 * 24 23 21 43 43 H 1.07995 * 126.06522 * 179.97438 * 25 24 23 44 44 H 1.07994 * 125.55887 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6966 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1986 -5.9795 -0.0004 14 6 3.1302 -5.8792 1.1432 15 6 3.4234 -7.3464 1.5444 16 6 2.0418 -8.0194 1.3141 17 6 1.4974 -7.2741 0.0773 18 1 1.6937 -7.8567 -0.8228 19 6 -0.0073 -7.0428 0.2294 20 7 -0.7031 -8.3320 0.2183 21 6 -2.0314 -8.3827 0.4406 22 8 -2.6527 -7.3576 0.6510 23 6 -2.7282 -9.6734 0.4289 24 6 -4.0761 -9.8737 0.6389 25 6 -4.3075 -11.2492 0.5385 26 6 -3.1233 -11.8515 0.2743 27 7 -2.1558 -10.9051 0.2054 28 1 -1.2162 -11.0683 0.0276 29 1 -0.4850 0.8399 -0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6177 -4.9205 -0.8914 32 1 0.6169 -4.9209 0.8886 33 1 4.0495 -5.3775 0.8410 34 1 2.6610 -5.3447 1.9692 35 1 4.1818 -7.7845 0.8954 36 1 3.7220 -7.4130 2.5906 37 1 1.3905 -7.8653 2.1744 38 1 2.1584 -9.0824 1.1031 39 1 -0.3659 -6.4291 -0.5969 40 1 -0.2028 -6.5325 1.1726 41 1 -0.2078 -9.1489 0.0509 42 1 -4.8148 -9.1116 0.8386 43 1 -5.2611 -11.7434 0.6516 44 1 -2.9745 -12.9129 0.1411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753098560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:43 Heat of formation + Delta-G solvation = -39.258060 kcal Electronic energy + Delta-G solvation = -26570.047839 eV Core-core repulsion = 22715.148029 eV Total energy + Delta-G solvation = -3854.899810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.22483 -41.23972 -40.08787 -39.20904 -36.10941 -35.74048 -33.54712 -33.01908 -32.12128 -31.35886 -29.80269 -28.35375 -26.32504 -26.10744 -23.60556 -22.41108 -21.64841 -21.45459 -21.08249 -20.73869 -20.01578 -19.49048 -18.23324 -17.18437 -16.99839 -16.82327 -16.40602 -16.27308 -16.06529 -15.96825 -15.63845 -15.22480 -14.95419 -14.59930 -14.55283 -14.37516 -14.16729 -13.68889 -13.51980 -13.48119 -13.32715 -13.17678 -13.02233 -12.85056 -12.46133 -12.34968 -12.15202 -11.99818 -11.97663 -11.62517 -11.49621 -11.35657 -10.38373 -10.23213 -10.04378 -9.94338 -9.29223 -9.17598 -8.48290 -5.98109 0.44501 1.37811 1.39260 1.51114 1.85205 1.92140 2.00299 2.24630 2.26871 2.34080 2.79003 3.17263 3.28167 3.48021 3.70198 3.79560 3.89947 4.10882 4.19832 4.27042 4.35404 4.36290 4.40600 4.42741 4.51128 4.53865 4.57737 4.73625 4.90108 5.01662 5.03409 5.11856 5.20421 5.24927 5.28731 5.33633 5.38132 5.74020 5.80298 5.92173 5.96901 6.08285 6.40889 6.56388 6.63314 7.08184 7.09223 7.51619 8.06371 8.69065 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.002687 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.167429 B =10417.314881 C =11892.928255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.016 4.016 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.333 4.333 8 H 0.082 0.918 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.612 6.612 12 C 0.046 3.954 13 N -0.510 5.510 14 C 0.051 3.949 15 C -0.121 4.121 16 C -0.129 4.129 17 C 0.066 3.934 18 H 0.114 0.886 19 C 0.107 3.893 20 N -0.706 5.706 21 C 0.583 3.417 22 O -0.580 6.580 23 C -0.081 4.081 24 C -0.130 4.130 25 C -0.232 4.232 26 C 0.051 3.949 27 N -0.524 5.524 28 H 0.433 0.567 29 H 0.278 0.722 30 H 0.394 0.606 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.020 0.980 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.413 0.587 42 H 0.130 0.870 43 H 0.159 0.841 44 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -28.985 1.362 29.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.100 0.900 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.498 6.498 12 C -0.085 4.085 13 N -0.234 5.234 14 C -0.077 4.077 15 C -0.159 4.159 16 C -0.167 4.167 17 C -0.042 4.042 18 H 0.132 0.868 19 C -0.018 4.018 20 N -0.358 5.358 21 C 0.372 3.628 22 O -0.460 6.460 23 C -0.194 4.194 24 C -0.158 4.158 25 C -0.255 4.255 26 C -0.087 4.087 27 N -0.122 5.122 28 H 0.273 0.727 29 H 0.087 0.913 30 H 0.227 0.773 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.250 0.750 42 H 0.148 0.852 43 H 0.177 0.823 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.023 -28.010 1.006 28.191 hybrid contribution -0.284 1.224 0.595 1.390 sum -3.306 -26.786 1.601 27.037 Atomic orbital electron populations 1.69688 1.07011 1.29436 1.50203 1.26119 0.96545 1.02648 0.96219 0.84948 0.77707 0.76380 0.79054 1.19509 1.19543 1.19540 1.19646 0.92732 0.83834 1.50033 0.90016 1.41955 1.09252 1.04853 1.65048 1.20668 0.88333 0.85874 0.82509 1.90467 1.15277 1.87723 1.56331 1.22035 0.94433 0.89227 1.02784 1.63562 1.15838 1.00281 1.43747 1.22982 0.96758 0.97855 0.90066 1.22772 0.97939 0.92788 1.02393 1.22952 0.95951 1.01409 0.96363 1.22856 0.89387 0.90891 1.01055 0.86830 1.21965 0.92517 0.85591 1.01677 1.45514 1.07266 1.10317 1.72716 1.17448 0.81872 0.87470 0.75974 1.90863 1.67430 1.36042 1.51659 1.20057 0.94356 0.84972 1.20018 1.21540 0.93573 0.97963 1.02704 1.21221 0.99971 0.92686 1.11648 1.22757 0.87094 0.96203 1.02601 1.41983 1.11408 1.04717 1.54050 0.72709 0.91276 0.77273 0.87658 0.91979 0.91543 0.96197 0.89532 0.89624 0.91635 0.86833 0.91835 0.92652 0.74986 0.85244 0.82293 0.76630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.08 13.05 21.66 0.28 -51.79 16 2 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 3 Si 1.00 44.19 29.55 68.60 2.03 46.22 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.33 -19.51 9.68 84.04 0.81 -18.70 16 8 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.57 -31.03 5.29 -306.98 -1.62 -32.66 16 10 C 0.44 21.84 7.44 87.66 0.65 22.49 16 11 O -0.61 -34.14 13.62 -3.07 -0.04 -34.18 16 12 C 0.05 1.74 4.21 85.56 0.36 2.10 16 13 N -0.51 -16.41 5.10 -865.09 -4.41 -20.82 16 14 C 0.05 1.68 5.20 86.77 0.45 2.13 16 15 C -0.12 -2.52 7.08 32.07 0.23 -2.29 16 16 C -0.13 -2.08 6.17 31.87 0.20 -1.89 16 17 C 0.07 1.41 3.49 45.26 0.16 1.57 16 18 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 19 C 0.11 2.55 3.71 86.38 0.32 2.87 16 20 N -0.71 -12.79 5.34 -467.07 -2.49 -15.28 16 21 C 0.58 14.66 7.79 86.45 0.67 15.33 16 22 O -0.58 -20.87 16.88 -4.33 -0.07 -20.94 16 23 C -0.08 -1.58 7.06 40.35 0.28 -1.29 16 24 C -0.13 -2.71 10.65 22.57 0.24 -2.47 16 25 C -0.23 -3.11 10.81 22.01 0.24 -2.87 16 26 C 0.05 0.38 11.89 83.48 0.99 1.37 16 27 N -0.52 -4.84 5.99 -183.62 -1.10 -5.94 16 28 H 0.43 0.79 8.19 -92.71 -0.76 0.03 16 29 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.39 20.70 7.90 -92.70 -0.73 19.97 16 31 H 0.11 3.66 6.84 -2.39 -0.02 3.65 16 32 H 0.06 2.23 6.40 -2.38 -0.02 2.22 16 33 H 0.07 2.66 6.85 -2.38 -0.02 2.64 16 34 H 0.02 0.72 7.73 -2.39 -0.02 0.70 16 35 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.16 7.79 -2.38 -0.02 1.14 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 1.75 6.44 -2.39 -0.02 1.73 16 40 H 0.06 1.58 6.81 -2.38 -0.02 1.56 16 41 H 0.41 3.84 7.50 -92.71 -0.70 3.14 16 42 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 43 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.22 -0.37 8.06 -2.91 -0.02 -0.39 16 Total: -1.00 -81.90 361.48 -2.48 -84.39 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -1.12 Total: 33.06 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 6.08 Total: 17.94 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -9.35 Total: -126.49 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -0.11 Total: -55.12 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -81.90 -2.48 -84.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753098560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.128 kcal (2) G-P(sol) polarization free energy of solvation -81.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds