Wall clock time and date at job start Fri Apr 10 2020 14:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 119.99727 * 2 1 4 4 H 1.48501 * 109.46835 * 239.99834 * 3 2 1 5 5 H 1.48501 * 109.46915 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47256 * 119.99785 * 3 2 1 7 7 C 1.38950 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00158 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99949 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99684 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00154 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46973 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00189 * 174.43919 * 13 12 10 15 15 C 1.53002 * 112.85047 * 291.35856 * 14 13 12 16 16 N 1.46498 * 109.47105 * 312.16690 * 15 14 13 17 17 C 1.34772 * 120.00008 * 174.76288 * 16 15 14 18 18 O 1.21693 * 120.00351 * 0.02562 * 17 16 15 19 19 C 1.46683 * 119.99859 * 179.97438 * 17 16 15 20 20 C 1.37869 * 126.23033 * 179.69115 * 19 17 16 21 21 C 1.39842 * 107.08538 * 179.85203 * 20 19 17 22 22 C 1.35452 * 107.85817 * 0.41997 * 21 20 19 23 23 N 1.35525 * 108.87581 * 359.73612 * 22 21 20 24 24 H 0.97000 * 125.67940 * 180.02562 * 23 22 21 25 25 C 1.53780 * 113.62038 * 160.04834 * 14 13 12 26 26 C 1.53781 * 87.08270 * 220.02373 * 25 14 13 27 27 C 1.53777 * 87.08158 * 25.42922 * 26 25 14 28 28 H 0.96998 * 120.00562 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00695 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47347 * 59.99861 * 12 10 9 31 31 H 1.09000 * 109.47062 * 299.99898 * 12 10 9 32 32 H 1.00900 * 111.00449 * 298.39272 * 13 12 10 33 33 H 1.09006 * 109.47267 * 72.16962 * 15 14 13 34 34 H 1.09001 * 109.47380 * 192.16122 * 15 14 13 35 35 H 0.96997 * 119.99783 * 354.76515 * 16 15 14 36 36 H 1.08005 * 126.45870 * 359.97202 * 20 19 17 37 37 H 1.07995 * 126.06692 * 180.14323 * 21 20 19 38 38 H 1.08002 * 125.56119 * 179.70900 * 22 21 20 39 39 H 1.09002 * 113.60646 * 334.57334 * 25 14 13 40 40 H 1.08997 * 113.61061 * 105.47063 * 25 14 13 41 41 H 1.09004 * 113.61369 * 270.88114 * 26 25 14 42 42 H 1.09000 * 113.61141 * 139.98287 * 26 25 14 43 43 H 1.08997 * 113.61546 * 220.01775 * 27 26 25 44 44 H 1.09007 * 113.61068 * 89.12038 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1017 1.6966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0000 13 7 2.1986 -5.9794 -0.0005 14 6 1.5034 -7.2667 0.1318 15 6 0.8681 -7.4599 1.5102 16 7 1.8438 -7.1214 2.5493 17 6 1.4734 -7.1153 3.8451 18 8 0.3286 -7.3914 4.1521 19 6 2.4504 -6.7768 4.8855 20 6 2.2111 -6.7253 6.2423 21 6 3.4144 -6.3676 6.8585 22 6 4.3446 -6.2012 5.8880 23 7 3.7716 -6.4470 4.6847 24 1 4.2182 -6.3988 3.8250 25 6 2.3390 -8.4693 -0.3375 26 6 1.0452 -9.0278 -0.9534 27 6 0.5496 -7.5744 -1.0346 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0005 30 1 0.6176 -4.9205 -0.8902 31 1 0.6170 -4.9209 0.8897 32 1 2.7741 -5.9628 -0.8292 33 1 -0.0022 -6.8103 1.6035 34 1 0.5599 -8.4990 1.6258 35 1 2.7563 -6.9016 2.3047 36 1 1.2718 -6.9256 6.7364 37 1 3.5726 -6.2416 7.9193 38 1 5.3747 -5.9184 6.0472 39 1 3.0983 -8.2118 -1.0759 40 1 2.7302 -9.0748 0.4800 41 1 0.4679 -9.6484 -0.2680 42 1 1.1914 -9.4945 -1.9275 43 1 -0.5037 -7.4574 -0.7799 44 1 0.8197 -7.0723 -1.9637 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754977247.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:34 Heat of formation + Delta-G solvation = -4.001196 kcal Electronic energy + Delta-G solvation = -26949.450624 eV Core-core repulsion = 23096.079666 eV Total energy + Delta-G solvation = -3853.370958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25701 -40.24755 -38.63700 -38.00909 -34.42775 -34.11676 -33.20709 -31.22831 -31.07247 -29.67365 -27.59873 -26.68397 -25.83057 -24.29674 -22.84135 -22.08528 -20.52733 -20.06893 -19.50319 -19.26103 -18.26943 -17.90914 -16.77638 -15.98130 -15.89105 -15.50669 -15.14056 -14.91797 -14.57638 -14.52833 -14.07744 -13.96670 -13.82853 -13.55976 -13.45414 -13.05228 -12.77386 -12.60894 -12.44307 -12.31621 -12.29101 -12.01489 -11.58158 -11.38764 -11.14700 -10.98887 -10.82043 -10.46982 -10.42616 -10.23387 -10.06822 -9.52550 -9.08356 -9.02936 -8.55316 -8.24058 -8.11714 -7.98964 -6.43735 -3.85048 1.49997 2.73764 3.05685 3.16873 3.17782 3.24084 3.27901 3.47781 3.87333 4.00945 4.23819 4.33889 4.45101 4.47717 4.64507 4.94171 5.02514 5.06871 5.21915 5.29467 5.32231 5.42434 5.43528 5.51718 5.58619 5.63118 5.71076 5.75002 5.85812 5.87693 5.97859 6.04137 6.11685 6.13496 6.23478 6.39939 6.67527 6.89051 7.09100 7.32129 7.51488 7.52244 7.60337 8.02832 8.23221 8.58081 9.14917 9.51459 10.02331 10.73769 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008823 B = 0.004024 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.683272 B = 6956.737504 C = 9168.111930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.586 6.586 12 C 0.052 3.948 13 N -0.653 5.653 14 C 0.079 3.921 15 C 0.154 3.846 16 N -0.712 5.712 17 C 0.587 3.413 18 O -0.539 6.539 19 C -0.053 4.053 20 C -0.111 4.111 21 C -0.215 4.215 22 C 0.023 3.977 23 N -0.535 5.535 24 H 0.419 0.581 25 C -0.129 4.129 26 C -0.140 4.140 27 C -0.166 4.166 28 H 0.273 0.727 29 H 0.392 0.608 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.353 0.647 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.405 0.595 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.170 0.830 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.984 -17.338 3.895 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.471 6.471 12 C -0.081 4.081 13 N -0.285 5.285 14 C -0.014 4.014 15 C 0.030 3.970 16 N -0.363 5.363 17 C 0.375 3.625 18 O -0.417 6.417 19 C -0.166 4.166 20 C -0.138 4.138 21 C -0.240 4.240 22 C -0.114 4.114 23 N -0.131 5.131 24 H 0.257 0.743 25 C -0.167 4.167 26 C -0.177 4.177 27 C -0.206 4.206 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.173 0.827 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.241 0.759 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.187 0.813 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.010 -17.293 4.589 18.335 hybrid contribution 0.033 1.106 -1.439 1.815 sum 4.043 -16.187 3.150 16.979 Atomic orbital electron populations 1.69599 1.05948 1.28338 1.50217 1.25264 0.95618 0.99729 0.97211 0.85925 0.78789 0.80509 0.79036 1.19927 1.20919 1.19887 1.19626 0.93272 0.82240 1.47952 0.88036 1.41862 1.09214 1.04630 1.64097 1.19782 0.88361 0.84648 0.84610 1.90504 1.13693 1.87125 1.55734 1.21626 0.94331 0.90760 1.01344 1.59820 1.22192 0.99540 1.46924 1.22571 0.94794 0.90373 0.93617 1.21021 0.91440 1.00646 0.83934 1.45617 1.15063 1.70459 1.05196 1.17078 0.86764 0.77184 0.81483 1.90821 1.18890 1.49865 1.82082 1.20431 0.84655 1.15999 0.95494 1.21297 0.99015 1.02493 0.90950 1.20878 0.93215 1.10699 0.99186 1.22043 0.99583 1.05738 0.84021 1.42083 1.09215 1.52639 1.09172 0.74335 1.23107 0.96917 0.95997 1.00687 1.22769 0.97321 0.96327 1.01322 1.23617 1.00537 0.97153 0.99287 0.91755 0.77488 0.93589 0.89784 0.82684 0.90908 0.90929 0.75919 0.83662 0.84048 0.81281 0.89467 0.90972 0.89929 0.91192 0.90928 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 10 C 0.44 10.09 7.83 -10.98 -0.09 10.01 16 11 O -0.59 -15.19 15.90 5.54 0.09 -15.10 16 12 C 0.05 0.87 5.78 -4.98 -0.03 0.84 16 13 N -0.65 -9.15 5.32 -100.40 -0.53 -9.68 16 14 C 0.08 0.86 0.79 -130.79 -0.10 0.76 16 15 C 0.15 1.87 4.60 -4.04 -0.02 1.85 16 16 N -0.71 -9.18 5.37 -61.62 -0.33 -9.51 16 17 C 0.59 8.91 7.79 -12.85 -0.10 8.81 16 18 O -0.54 -9.80 16.88 5.20 0.09 -9.71 16 19 C -0.05 -0.72 7.06 -81.98 -0.58 -1.30 16 20 C -0.11 -1.48 10.65 -39.12 -0.42 -1.90 16 21 C -0.22 -2.39 10.81 -39.98 -0.43 -2.82 16 22 C 0.02 0.23 11.89 -16.91 -0.20 0.03 16 23 N -0.54 -5.92 5.99 -9.39 -0.06 -5.98 16 24 H 0.42 3.84 8.19 -40.82 -0.33 3.51 16 25 C -0.13 -1.15 7.34 -25.92 -0.19 -1.34 16 26 C -0.14 -1.14 7.73 -25.92 -0.20 -1.34 16 27 C -0.17 -1.62 6.49 -25.92 -0.17 -1.79 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 30 H 0.05 0.71 7.59 -51.93 -0.39 0.32 16 31 H 0.08 1.43 6.91 -51.93 -0.36 1.07 16 32 H 0.35 5.04 8.38 -39.29 -0.33 4.71 16 33 H 0.07 1.00 7.36 -51.93 -0.38 0.62 16 34 H 0.07 0.82 7.36 -51.93 -0.38 0.43 16 35 H 0.41 4.86 7.22 -40.82 -0.29 4.57 16 36 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.09 0.76 7.96 -51.93 -0.41 0.35 16 40 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.08 0.64 7.67 -51.93 -0.40 0.24 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -33.23 371.29 -8.35 -41.58 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -6.08 Total: 21.03 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -2.77 Total: 3.85 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.26 Total: -63.24 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.18 Total: -24.81 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.23 -8.35 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754977247.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.577 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds