Wall clock time and date at job start Fri Apr 10 2020 14:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 119.99727 * 2 1 4 4 H 1.48501 * 109.46835 * 239.99834 * 3 2 1 5 5 H 1.48501 * 109.46915 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47256 * 119.99785 * 3 2 1 7 7 C 1.38950 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00158 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99949 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99684 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00154 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46973 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00189 * 174.43919 * 13 12 10 15 15 C 1.53002 * 112.85047 * 291.35856 * 14 13 12 16 16 N 1.46498 * 109.47105 * 312.16690 * 15 14 13 17 17 C 1.34772 * 120.00008 * 174.76288 * 16 15 14 18 18 O 1.21693 * 120.00351 * 0.02562 * 17 16 15 19 19 C 1.46683 * 119.99859 * 179.97438 * 17 16 15 20 20 C 1.37869 * 126.23033 * 179.69115 * 19 17 16 21 21 C 1.39842 * 107.08538 * 179.85203 * 20 19 17 22 22 C 1.35452 * 107.85817 * 0.41997 * 21 20 19 23 23 N 1.35525 * 108.87581 * 359.73612 * 22 21 20 24 24 H 0.97000 * 125.67940 * 180.02562 * 23 22 21 25 25 C 1.53780 * 113.62038 * 160.04834 * 14 13 12 26 26 C 1.53781 * 87.08270 * 220.02373 * 25 14 13 27 27 C 1.53777 * 87.08158 * 25.42922 * 26 25 14 28 28 H 0.96998 * 120.00562 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00695 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47347 * 59.99861 * 12 10 9 31 31 H 1.09000 * 109.47062 * 299.99898 * 12 10 9 32 32 H 1.00900 * 111.00449 * 298.39272 * 13 12 10 33 33 H 1.09006 * 109.47267 * 72.16962 * 15 14 13 34 34 H 1.09001 * 109.47380 * 192.16122 * 15 14 13 35 35 H 0.96997 * 119.99783 * 354.76515 * 16 15 14 36 36 H 1.08005 * 126.45870 * 359.97202 * 20 19 17 37 37 H 1.07995 * 126.06692 * 180.14323 * 21 20 19 38 38 H 1.08002 * 125.56119 * 179.70900 * 22 21 20 39 39 H 1.09002 * 113.60646 * 334.57334 * 25 14 13 40 40 H 1.08997 * 113.61061 * 105.47063 * 25 14 13 41 41 H 1.09004 * 113.61369 * 270.88114 * 26 25 14 42 42 H 1.09000 * 113.61141 * 139.98287 * 26 25 14 43 43 H 1.08997 * 113.61546 * 220.01775 * 27 26 25 44 44 H 1.09007 * 113.61068 * 89.12038 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1017 1.6966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0000 13 7 2.1986 -5.9794 -0.0005 14 6 1.5034 -7.2667 0.1318 15 6 0.8681 -7.4599 1.5102 16 7 1.8438 -7.1214 2.5493 17 6 1.4734 -7.1153 3.8451 18 8 0.3286 -7.3914 4.1521 19 6 2.4504 -6.7768 4.8855 20 6 2.2111 -6.7253 6.2423 21 6 3.4144 -6.3676 6.8585 22 6 4.3446 -6.2012 5.8880 23 7 3.7716 -6.4470 4.6847 24 1 4.2182 -6.3988 3.8250 25 6 2.3390 -8.4693 -0.3375 26 6 1.0452 -9.0278 -0.9534 27 6 0.5496 -7.5744 -1.0346 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0005 30 1 0.6176 -4.9205 -0.8902 31 1 0.6170 -4.9209 0.8897 32 1 2.7741 -5.9628 -0.8292 33 1 -0.0022 -6.8103 1.6035 34 1 0.5599 -8.4990 1.6258 35 1 2.7563 -6.9016 2.3047 36 1 1.2718 -6.9256 6.7364 37 1 3.5726 -6.2416 7.9193 38 1 5.3747 -5.9184 6.0472 39 1 3.0983 -8.2118 -1.0759 40 1 2.7302 -9.0748 0.4800 41 1 0.4679 -9.6484 -0.2680 42 1 1.1914 -9.4945 -1.9275 43 1 -0.5037 -7.4574 -0.7799 44 1 0.8197 -7.0723 -1.9637 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754977247.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:34 Heat of formation + Delta-G solvation = -29.624184 kcal Electronic energy + Delta-G solvation = -26950.561720 eV Core-core repulsion = 23096.079666 eV Total energy + Delta-G solvation = -3854.482054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.20130 -41.21550 -39.98974 -39.58635 -36.04730 -35.49149 -34.55037 -33.24230 -31.98392 -30.65775 -28.82693 -27.93760 -26.77547 -25.94054 -23.85292 -23.03971 -21.42076 -21.07452 -21.05496 -20.46009 -19.91117 -19.22829 -18.06262 -17.22026 -16.99472 -16.83147 -16.46310 -16.25638 -15.96989 -15.78683 -15.66109 -15.07957 -14.90381 -14.76525 -14.52719 -14.32708 -13.99130 -13.71549 -13.54539 -13.51960 -13.24627 -13.20895 -13.14036 -12.92944 -12.45436 -12.43162 -12.16134 -11.98410 -11.59579 -11.50386 -11.26732 -11.22474 -10.35853 -10.19855 -10.03017 -9.94734 -9.33369 -9.16629 -8.47623 -5.96846 0.47601 1.38359 1.40227 1.51271 1.85038 2.03603 2.05056 2.25672 2.28595 2.38360 2.86326 3.19388 3.42348 3.49886 3.60049 3.73761 3.90218 3.95533 4.25338 4.32435 4.39932 4.43414 4.45291 4.48481 4.54077 4.57240 4.66349 4.80324 4.84682 5.05684 5.08442 5.11022 5.13814 5.26954 5.31287 5.38843 5.43445 5.75916 5.85486 5.95448 6.05500 6.38247 6.45156 6.57537 6.60153 7.10675 7.11389 7.54509 8.08586 8.69592 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008823 B = 0.004024 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.683272 B = 6956.737504 C = 9168.111930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.082 0.918 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.616 6.616 12 C 0.070 3.930 13 N -0.656 5.656 14 C 0.077 3.923 15 C 0.153 3.847 16 N -0.702 5.702 17 C 0.582 3.418 18 O -0.580 6.580 19 C -0.084 4.084 20 C -0.128 4.128 21 C -0.227 4.227 22 C 0.039 3.961 23 N -0.530 5.530 24 H 0.427 0.573 25 C -0.120 4.120 26 C -0.128 4.128 27 C -0.166 4.166 28 H 0.277 0.723 29 H 0.393 0.607 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.353 0.647 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.410 0.590 36 H 0.138 0.862 37 H 0.164 0.836 38 H 0.210 0.790 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 -17.899 3.618 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.099 0.901 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.502 6.502 12 C -0.062 4.062 13 N -0.289 5.289 14 C -0.015 4.015 15 C 0.029 3.971 16 N -0.353 5.353 17 C 0.371 3.629 18 O -0.461 6.461 19 C -0.197 4.197 20 C -0.155 4.155 21 C -0.251 4.251 22 C -0.098 4.098 23 N -0.126 5.126 24 H 0.266 0.734 25 C -0.158 4.158 26 C -0.166 4.166 27 C -0.206 4.206 28 H 0.086 0.914 29 H 0.227 0.773 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.174 0.826 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.247 0.753 36 H 0.156 0.844 37 H 0.182 0.818 38 H 0.227 0.773 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.295 -17.879 4.277 19.131 hybrid contribution -0.310 1.222 -1.314 1.821 sum 4.986 -16.658 2.963 17.638 Atomic orbital electron populations 1.69673 1.06964 1.29347 1.50325 1.26060 0.96493 1.02521 0.96275 0.84991 0.77755 0.76609 0.79015 1.19429 1.19682 1.19720 1.19631 0.92717 0.83933 1.49965 0.90053 1.41963 1.09234 1.04911 1.65117 1.20789 0.88310 0.85904 0.82209 1.90473 1.15358 1.87916 1.56490 1.21365 0.94089 0.88586 1.02164 1.59763 1.22032 0.99964 1.47116 1.22654 0.95963 0.89474 0.93360 1.21090 0.90810 1.00871 0.84374 1.45573 1.15353 1.69580 1.04763 1.17350 0.86552 0.76694 0.82283 1.90782 1.20532 1.52041 1.82748 1.20318 0.85780 1.18324 0.95324 1.21520 0.99882 1.02807 0.91326 1.21212 0.92428 1.10744 1.00671 1.22746 1.00948 1.03117 0.83038 1.42113 1.08292 1.52102 1.10129 0.73387 1.23094 0.97258 0.94535 1.00943 1.22741 0.96400 0.95303 1.02174 1.23614 1.00151 0.98472 0.98347 0.91355 0.77338 0.91689 0.89792 0.82606 0.92842 0.89715 0.75338 0.84374 0.81842 0.77341 0.88858 0.90340 0.89245 0.89790 0.91005 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.43 13.05 21.66 0.28 -50.14 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 3 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.58 -29.53 5.29 -306.97 -1.62 -31.16 16 10 C 0.44 20.38 7.83 87.66 0.69 21.07 16 11 O -0.62 -32.28 15.90 -3.09 -0.05 -32.33 16 12 C 0.07 2.35 5.78 85.56 0.49 2.84 16 13 N -0.66 -17.77 5.32 -471.55 -2.51 -20.28 16 14 C 0.08 1.57 0.79 4.05 0.00 1.58 16 15 C 0.15 3.64 4.60 86.38 0.40 4.03 16 16 N -0.70 -18.06 5.37 -467.07 -2.51 -20.57 16 17 C 0.58 18.13 7.79 86.45 0.67 18.80 16 18 O -0.58 -21.98 16.88 -4.33 -0.07 -22.05 16 19 C -0.08 -2.35 7.06 40.35 0.28 -2.06 16 20 C -0.13 -3.45 10.65 22.57 0.24 -3.21 16 21 C -0.23 -4.70 10.81 22.01 0.24 -4.46 16 22 C 0.04 0.68 11.89 83.48 0.99 1.67 16 23 N -0.53 -11.11 5.99 -183.63 -1.10 -12.21 16 24 H 0.43 7.29 8.19 -92.71 -0.76 6.53 16 25 C -0.12 -1.85 7.34 31.12 0.23 -1.62 16 26 C -0.13 -1.75 7.73 31.12 0.24 -1.51 16 27 C -0.17 -2.92 6.49 31.12 0.20 -2.72 16 28 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.39 19.62 7.90 -92.71 -0.73 18.89 16 30 H 0.07 1.95 7.59 -2.39 -0.02 1.93 16 31 H 0.08 2.85 6.91 -2.39 -0.02 2.84 16 32 H 0.35 9.67 8.38 -89.69 -0.75 8.92 16 33 H 0.05 1.49 7.36 -2.38 -0.02 1.47 16 34 H 0.08 1.83 7.36 -2.39 -0.02 1.81 16 35 H 0.41 9.63 7.22 -92.71 -0.67 8.96 16 36 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 37 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.09 1.37 7.96 -2.39 -0.02 1.35 16 40 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 41 H 0.09 1.13 7.67 -2.39 -0.02 1.11 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 44 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -73.15 371.29 -1.43 -74.58 By element: Atomic # 1 Polarization: 54.96 SS G_CDS: -1.84 Total: 53.12 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 5.96 Total: 16.14 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -7.46 Total: -134.37 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -0.12 Total: -54.38 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -73.15 -1.43 -74.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754977247.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.952 kcal (2) G-P(sol) polarization free energy of solvation -73.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds