Wall clock time and date at job start Fri Apr 10 2020 14:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99419 * 2 1 4 4 H 1.48498 * 109.47134 * 270.00300 * 3 2 1 5 5 H 1.48504 * 109.47293 * 30.00097 * 3 2 1 6 6 H 1.48499 * 109.46991 * 150.00366 * 3 2 1 7 7 C 1.37872 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99922 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99881 * 179.72103 * 7 2 1 10 10 C 1.53005 * 109.47054 * 180.27699 * 9 7 2 11 11 C 1.52997 * 109.47283 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47185 * 179.97438 * 11 10 9 13 13 O 1.42097 * 110.54088 * 291.62105 * 12 11 10 14 14 O 1.42103 * 110.54256 * 68.37346 * 12 11 10 15 15 N 1.65602 * 104.45038 * 179.97438 * 12 11 10 16 16 C 1.47149 * 120.97980 * 100.89457 * 15 12 11 17 17 C 1.53305 * 108.38118 * 230.51088 * 16 15 12 18 18 O 1.42960 * 109.22666 * 307.70065 * 17 16 15 19 19 C 1.42963 * 114.16267 * 62.57784 * 18 17 16 20 20 C 1.47153 * 120.98088 * 280.61434 * 15 12 11 21 21 H 1.08996 * 109.68308 * 249.20939 * 20 15 12 22 22 C 1.53005 * 109.68246 * 9.76367 * 20 15 12 23 23 C 1.50704 * 109.46970 * 176.92807 * 22 20 15 24 24 O 1.20818 * 120.00171 * 7.13918 * 23 22 20 25 25 O 1.34222 * 119.99690 * 187.14185 * 23 22 20 26 26 H 0.96993 * 120.00526 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47486 * 300.27569 * 9 7 2 28 28 H 1.08997 * 109.47412 * 60.27685 * 9 7 2 29 29 H 1.09000 * 109.46868 * 300.00249 * 10 9 7 30 30 H 1.08997 * 109.47023 * 59.99748 * 10 9 7 31 31 H 1.09000 * 109.47089 * 299.99767 * 11 10 9 32 32 H 1.08997 * 109.47580 * 59.99743 * 11 10 9 33 33 H 1.08994 * 109.68351 * 350.23655 * 16 15 12 34 34 H 1.08996 * 109.67964 * 110.79601 * 16 15 12 35 35 H 1.09000 * 109.50682 * 67.62874 * 17 16 15 36 36 H 1.09000 * 109.50756 * 187.77338 * 17 16 15 37 37 H 1.09002 * 109.51267 * 57.35224 * 19 18 17 38 38 H 1.09000 * 109.50860 * 177.44700 * 19 18 17 39 39 H 1.08994 * 109.46904 * 296.92786 * 22 20 15 40 40 H 1.09004 * 109.47103 * 56.92725 * 22 20 15 41 41 H 0.96701 * 116.99952 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1938 -0.0069 10 6 4.0218 -2.6362 -0.0131 11 6 5.5517 -2.6361 -0.0190 12 16 6.1565 -4.3464 -0.0256 13 8 5.8652 -4.9830 1.2109 14 8 5.8557 -4.9768 -1.2631 15 7 7.8062 -4.2013 -0.0322 16 6 8.5868 -4.3754 1.2029 17 6 9.5278 -3.1746 1.3534 18 8 10.2768 -3.0093 0.1470 19 6 9.4781 -2.7175 -1.0023 20 6 8.5351 -3.9005 -1.2746 21 1 9.1138 -4.7719 -1.5809 22 6 7.5422 -3.5268 -2.3771 23 6 8.2968 -3.1469 -3.6250 24 8 9.4949 -3.2948 -3.6752 25 8 7.6379 -2.6441 -4.6808 26 1 -0.4850 0.8399 0.0004 27 1 3.8712 -0.6774 -0.8969 28 1 3.8787 -0.6824 0.8830 29 1 3.6622 -3.1526 0.8769 30 1 3.6547 -3.1476 -0.9030 31 1 5.9116 -2.1196 -0.9088 32 1 5.9185 -2.1249 0.8711 33 1 7.9137 -4.4239 2.0588 34 1 9.1706 -5.2938 1.1418 35 1 8.9425 -2.2752 1.5448 36 1 10.2107 -3.3492 2.1849 37 1 8.8927 -1.8164 -0.8196 38 1 10.1253 -2.5624 -1.8655 39 1 6.8963 -4.3790 -2.5883 40 1 6.9350 -2.6833 -2.0486 41 1 8.1647 -2.4155 -5.4588 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364419498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:56 Heat of formation + Delta-G solvation = -195.546305 kcal Electronic energy + Delta-G solvation = -26626.379296 eV Core-core repulsion = 22634.301762 eV Total energy + Delta-G solvation = -3992.077534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.88489 -39.45350 -37.49414 -36.51330 -36.12183 -35.43873 -34.97162 -32.99871 -32.28119 -29.16663 -28.51239 -26.97070 -24.34159 -23.80395 -21.98486 -21.49895 -20.36859 -19.21975 -18.41363 -17.72428 -17.45366 -16.97894 -16.90612 -16.27365 -16.09255 -15.79785 -15.51556 -15.14172 -15.08393 -14.74964 -14.40133 -14.26582 -13.45317 -13.24210 -13.00125 -12.66689 -12.51202 -12.38948 -12.26919 -12.11870 -12.07816 -11.96476 -11.72267 -11.63107 -11.43221 -11.12410 -11.02617 -10.96352 -10.65470 -10.43723 -10.17023 -9.94398 -9.71840 -9.34507 -9.08801 -8.64365 -6.13850 -4.13719 0.09921 1.84430 2.22545 2.76232 3.21785 3.29872 3.30925 3.50493 3.65461 3.95658 4.03377 4.27080 4.34906 4.40481 4.55079 4.77073 4.81789 4.84672 4.94189 4.98064 5.06583 5.18732 5.20044 5.37129 5.46416 5.53753 5.58680 5.65784 5.75445 5.99502 6.10904 6.14232 6.23392 6.55876 6.79869 7.03363 7.17487 7.56603 7.64412 8.41266 8.90210 9.46969 10.99376 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013079 B = 0.004180 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.286039 B = 6696.228603 C = 7352.080774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.097 4.097 11 C -0.620 4.620 12 S 2.596 3.404 13 O -0.950 6.950 14 O -0.953 6.953 15 N -1.005 6.005 16 C 0.087 3.913 17 C 0.042 3.958 18 O -0.372 6.372 19 C 0.043 3.957 20 C 0.141 3.859 21 H 0.102 0.898 22 C -0.192 4.192 23 C 0.497 3.503 24 O -0.515 6.515 25 O -0.508 6.508 26 H 0.265 0.735 27 H 0.016 0.984 28 H 0.020 0.980 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.123 0.877 39 H 0.178 0.822 40 H 0.111 0.889 41 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.192 -5.818 -2.666 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.137 4.137 11 C -0.752 4.752 12 S 2.694 3.306 13 O -0.941 6.941 14 O -0.943 6.943 15 N -0.843 5.843 16 C -0.038 4.038 17 C -0.036 4.036 18 O -0.290 6.290 19 C -0.035 4.035 20 C 0.034 3.966 21 H 0.120 0.880 22 C -0.230 4.230 23 C 0.340 3.660 24 O -0.405 6.405 25 O -0.319 6.319 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.038 0.962 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.195 0.805 40 H 0.129 0.871 41 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 20.862 -6.718 -2.312 22.039 hybrid contribution 0.479 1.882 -0.513 2.009 sum 21.341 -4.836 -2.825 22.064 Atomic orbital electron populations 1.69902 1.06285 1.27053 1.50484 1.25013 0.94742 0.99138 0.94395 0.86796 0.80314 0.83693 0.78568 1.20176 1.21206 1.19108 1.21104 0.89144 0.94804 1.51589 0.90685 1.19530 0.97453 0.90508 0.96763 1.21341 0.86116 1.03190 1.03003 1.30875 1.10009 1.23004 1.11265 1.05582 0.72219 0.78432 0.74351 1.93568 1.82441 1.73172 1.44873 1.93435 1.82761 1.73830 1.44282 1.58042 1.24549 1.87699 1.13970 1.22172 0.95616 0.99734 0.86308 1.23052 0.95408 0.97104 0.88065 1.88000 1.33102 1.91572 1.16293 1.23415 0.95100 0.94965 0.90051 1.21372 0.92681 1.00547 0.81990 0.88047 1.22826 1.00475 1.08371 0.91293 1.22782 0.85931 0.72816 0.84520 1.90701 1.16057 1.51127 1.82593 1.84560 1.45960 1.75259 1.26131 0.92556 0.96580 0.96164 0.90827 0.90761 0.85444 0.85054 0.87400 0.90001 0.92361 0.87441 0.92674 0.85968 0.80501 0.87078 0.72731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.89 27.46 -169.99 -4.67 16.22 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.27 -5.99 6.55 56.52 0.37 -5.62 16 7 C -0.53 -14.58 9.66 -34.44 -0.33 -14.91 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 10 C -0.10 -1.76 5.16 -26.73 -0.14 -1.90 16 11 C -0.62 -8.16 5.94 37.16 0.22 -7.94 16 12 S 2.60 34.20 4.85 -107.50 -0.52 33.67 16 13 O -0.95 -15.07 16.48 -57.54 -0.95 -16.02 16 14 O -0.95 -14.10 14.23 -57.54 -0.82 -14.92 16 15 N -1.00 -10.65 3.26 -105.80 -0.34 -10.99 16 16 C 0.09 0.78 6.57 -3.53 -0.02 0.76 16 17 C 0.04 0.34 6.98 37.32 0.26 0.60 16 18 O -0.37 -3.91 10.74 -35.23 -0.38 -4.29 16 19 C 0.04 0.42 5.82 37.53 0.22 0.64 16 20 C 0.14 1.43 2.79 -67.20 -0.19 1.24 16 21 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 22 C -0.19 -1.95 4.11 -27.88 -0.11 -2.06 16 23 C 0.50 4.91 7.94 36.01 0.29 5.20 16 24 O -0.52 -5.89 14.66 -18.74 -0.27 -6.16 16 25 O -0.51 -4.22 13.42 -39.24 -0.53 -4.74 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.02 0.34 7.56 -51.93 -0.39 -0.05 16 28 H 0.02 0.44 7.21 -51.93 -0.37 0.07 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.13 1.40 5.59 -51.92 -0.29 1.11 16 32 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.11 0.92 6.91 -51.93 -0.36 0.56 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.12 1.25 5.91 -51.93 -0.31 0.95 16 39 H 0.18 1.99 5.20 -52.06 -0.27 1.72 16 40 H 0.11 1.00 5.09 -51.93 -0.26 0.74 16 41 H 0.41 1.53 9.10 45.56 0.41 1.95 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -35.77 338.28 -7.44 -43.21 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.81 Total: 1.99 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.02 Total: -16.71 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.43 Total: -37.35 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -2.95 Total: -46.13 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 34.20 SS G_CDS: -0.52 Total: 33.67 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.77 -7.44 -43.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364419498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.339 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds