Wall clock time and date at job start Fri Apr 10 2020 14:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47033 * 2 1 4 4 N 1.46893 * 109.47071 * 239.99819 * 2 1 3 5 5 C 1.46900 * 111.00361 * 85.00284 * 4 2 1 6 6 C 1.52998 * 109.47345 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47014 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99910 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99855 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00114 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99990 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47105 * 90.00321 * 11 9 7 13 13 H 1.48504 * 109.46908 * 210.00009 * 11 9 7 14 14 H 1.48496 * 109.47321 * 329.99798 * 11 9 7 15 15 C 1.50702 * 109.46854 * 119.99563 * 2 1 3 16 16 N 1.30967 * 126.44061 * 255.01989 * 15 2 1 17 17 C 1.35219 * 105.58418 * 179.97438 * 16 15 2 18 18 C 1.48406 * 126.41881 * 180.02562 * 17 16 15 19 19 C 1.39339 * 120.10404 * 359.72756 * 18 17 16 20 20 C 1.37987 * 119.89024 * 179.76601 * 19 18 17 21 21 C 1.38449 * 120.10500 * 0.50959 * 20 19 18 22 22 Cl 1.73607 * 119.89356 * 179.72224 * 21 20 19 23 23 C 1.38455 * 120.21710 * 359.73815 * 21 20 19 24 24 C 1.37983 * 120.10251 * 0.02562 * 23 21 20 25 25 N 1.30778 * 107.16778 * 359.97438 * 17 16 15 26 26 O 1.21293 * 110.09285 * 359.97438 * 25 17 16 27 27 H 1.08997 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46791 * 300.00421 * 1 2 3 29 29 H 1.09002 * 109.46795 * 59.99914 * 1 2 3 30 30 H 1.00906 * 111.00035 * 208.95436 * 4 2 1 31 31 H 1.09002 * 109.46896 * 299.99740 * 5 4 2 32 32 H 1.09002 * 109.46925 * 59.99634 * 5 4 2 33 33 H 1.09002 * 109.47165 * 299.99886 * 6 5 4 34 34 H 1.09002 * 109.47155 * 60.00085 * 6 5 4 35 35 H 0.96999 * 120.00421 * 179.97438 * 10 9 7 36 36 H 1.08001 * 120.05706 * 359.97438 * 19 18 17 37 37 H 1.07993 * 119.95193 * 180.22555 * 20 19 18 38 38 H 1.07997 * 119.94871 * 179.97438 * 23 21 20 39 39 H 1.08001 * 120.05282 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5963 -0.5330 -3.5741 7 6 2.6602 0.4056 -4.7514 8 1 2.3636 1.4376 -4.6360 9 6 3.0963 -0.0535 -5.9762 10 7 3.1516 0.7654 -7.0037 11 14 3.6086 -1.8388 -6.1760 12 1 2.4296 -2.6510 -6.5700 13 1 4.6527 -1.9394 -7.2272 14 1 4.1510 -2.3451 -4.8897 15 6 2.0323 -0.7103 1.2305 16 7 2.5484 -0.1502 2.2960 17 6 2.8517 -1.1692 3.1314 18 6 3.4626 -1.0519 4.4788 19 6 3.7856 0.2023 4.9929 20 6 4.3491 0.3066 6.2481 21 6 4.6032 -0.8330 6.9922 22 17 5.3189 -0.6959 8.5679 23 6 4.2887 -2.0818 6.4835 24 6 3.7205 -2.1960 5.2313 25 7 2.5048 -2.2776 2.5302 26 8 2.0330 -2.0304 1.4404 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.9174 -1.1205 -1.0286 31 1 1.0872 0.6162 -2.5526 32 1 2.7590 1.0461 -2.1182 33 1 3.5918 -0.9264 -3.3682 34 1 1.9202 -1.3568 -3.8029 35 1 3.4587 0.4425 -7.8653 36 1 3.5923 1.0915 4.4112 37 1 4.5965 1.2783 6.6490 38 1 4.4892 -2.9679 7.0675 39 1 3.4752 -3.1704 4.8355 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097085781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:22 Heat of formation + Delta-G solvation = 81.909417 kcal Electronic energy + Delta-G solvation = -22891.185596 eV Core-core repulsion = 19248.697410 eV Total energy + Delta-G solvation = -3642.488186 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.75444 -39.79932 -37.40544 -37.07297 -35.91787 -33.81510 -32.63150 -31.69085 -31.27603 -30.41512 -28.64685 -25.31753 -25.05558 -23.94980 -22.91448 -22.58866 -20.68296 -20.55984 -18.28763 -18.18405 -17.27888 -16.81855 -16.32079 -16.05603 -15.52993 -15.27786 -14.53439 -14.43666 -14.14064 -14.07546 -13.83264 -13.24936 -12.94292 -12.89437 -12.65691 -12.48700 -12.38179 -12.12678 -12.04926 -11.73859 -11.65773 -11.42353 -11.38605 -11.22412 -11.01288 -10.52211 -10.24468 -9.89753 -9.83606 -9.62584 -9.29268 -9.00247 -8.58279 -8.32044 -6.08671 -4.07961 0.12953 0.74560 1.03184 1.58303 2.05323 2.57194 3.07993 3.19111 3.30559 3.37948 3.41839 3.58325 4.21214 4.33108 4.38352 4.42514 4.55064 4.70948 4.91276 4.99098 5.05443 5.08463 5.24890 5.25882 5.40919 5.51632 5.62959 5.65286 5.73063 5.78852 5.89903 5.99578 6.04307 6.14428 6.16591 6.63841 6.88260 7.24058 7.34731 7.48747 7.75730 7.90382 8.46538 8.94571 9.53206 11.04343 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.001996 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.431037 B =14024.050096 C =14235.721804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.176 3.824 3 H 0.092 0.908 4 N -0.683 5.683 5 C 0.072 3.928 6 C -0.010 4.010 7 C -0.523 4.523 8 H 0.072 0.928 9 C 0.068 3.932 10 N -0.902 5.902 11 Si 0.882 3.118 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.265 1.265 15 C 0.199 3.801 16 N -0.475 5.475 17 C 0.202 3.798 18 C -0.012 4.012 19 C -0.063 4.063 20 C -0.112 4.112 21 C -0.020 4.020 22 Cl -0.065 7.065 23 C -0.112 4.112 24 C -0.072 4.072 25 N -0.375 5.375 26 O 0.100 5.900 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.342 0.658 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.014 0.986 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 -3.229 29.481 29.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.064 3.936 3 H 0.109 0.891 4 N -0.317 5.317 5 C -0.055 4.055 6 C -0.048 4.048 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.134 4.134 10 N -0.540 5.540 11 Si 0.709 3.291 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.190 1.190 15 C -0.022 4.022 16 N -0.209 5.209 17 C -0.067 4.067 18 C -0.014 4.014 19 C -0.083 4.083 20 C -0.131 4.131 21 C -0.048 4.048 22 Cl -0.036 7.036 23 C -0.131 4.131 24 C -0.092 4.092 25 N -0.079 5.079 26 O 0.039 5.961 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.160 0.840 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.033 0.967 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.249 -3.911 29.857 30.113 hybrid contribution 1.126 -0.336 -0.065 1.177 sum 0.877 -4.247 29.792 30.106 Atomic orbital electron populations 1.21872 0.91456 1.03758 1.02876 1.20264 0.97259 0.94876 0.81214 0.89093 1.60877 1.33897 1.34049 1.02846 1.22128 1.00983 0.93235 0.89170 1.19555 0.95951 0.96685 0.92597 1.21016 1.44636 0.97743 0.92791 0.90979 1.24998 0.94946 0.97632 0.95778 1.69905 1.47496 1.35406 1.01225 0.86748 0.78699 0.85565 0.78081 1.20158 1.21495 1.18987 1.29031 0.94521 0.81084 0.97601 1.71984 1.17145 1.29929 1.01793 1.23789 1.01334 0.84292 0.97325 1.17422 1.00788 0.94573 0.88590 1.21215 0.95358 0.97183 0.94529 1.21038 0.99886 0.98142 0.94019 1.21149 1.00266 0.95190 0.88168 1.98391 1.81890 1.98387 1.24914 1.20984 0.99737 0.96518 0.95816 1.21161 0.96430 0.98467 0.93143 1.74907 1.15185 1.23092 0.94731 1.85347 1.57471 1.26870 1.26458 0.91008 0.92120 0.89898 0.83975 0.90822 0.95186 0.96743 0.95754 0.92656 0.83547 0.83981 0.84059 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.40 37.16 0.35 -1.16 16 2 C 0.18 2.16 3.16 -68.86 -0.22 1.94 16 3 H 0.09 1.08 7.80 -51.93 -0.40 0.68 16 4 N -0.68 -10.17 6.30 -107.95 -0.68 -10.86 16 5 C 0.07 1.30 5.42 -3.82 -0.02 1.27 16 6 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 7 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 10 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 11 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 15 C 0.20 2.56 6.98 -12.99 -0.09 2.47 16 16 N -0.48 -6.27 11.26 -9.88 -0.11 -6.38 16 17 C 0.20 2.61 7.80 -156.11 -1.22 1.39 16 18 C -0.01 -0.13 5.88 -104.89 -0.62 -0.74 16 19 C -0.06 -0.57 9.70 -39.26 -0.38 -0.95 16 20 C -0.11 -0.85 9.81 -39.60 -0.39 -1.24 16 21 C -0.02 -0.16 6.32 -39.42 -0.25 -0.41 16 22 Cl -0.06 -0.47 28.95 -51.86 -1.50 -1.97 16 23 C -0.11 -0.85 9.81 -39.59 -0.39 -1.24 16 24 C -0.07 -0.65 9.69 -39.26 -0.38 -1.03 16 25 N -0.37 -5.11 11.86 30.97 0.37 -4.74 16 26 O 0.10 1.37 11.29 18.04 0.20 1.58 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.89 7.45 -51.93 -0.39 0.51 16 30 H 0.34 5.05 8.35 -39.29 -0.33 4.72 16 31 H 0.07 1.30 7.44 -51.93 -0.39 0.91 16 32 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 33 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 34 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.15 1.25 7.88 -52.49 -0.41 0.84 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.14 1.19 7.87 -52.49 -0.41 0.78 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -30.35 353.56 -9.24 -39.58 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.79 Total: 0.13 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -4.15 Total: -12.89 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.35 Total: -48.48 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: 0.20 Total: 1.58 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.35 -9.24 -39.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097085781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.491 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds