Wall clock time and date at job start Fri Apr 10 2020 14:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34238 * 116.99683 * 2 1 4 4 O 1.20820 * 119.99823 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99719 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47413 * 59.99789 * 5 3 2 7 7 N 1.46500 * 109.46875 * 180.02562 * 5 3 2 8 8 S 1.65603 * 119.99836 * 244.82083 * 7 5 3 9 9 O 1.42100 * 104.27787 * 179.18611 * 8 7 5 10 10 O 1.42094 * 104.27725 * 307.04438 * 8 7 5 11 11 C 1.81393 * 104.44680 * 63.11663 * 8 7 5 12 12 C 1.53004 * 109.47454 * 178.01971 * 11 8 7 13 13 C 1.50704 * 115.54736 * 58.97035 * 12 11 8 14 14 H 1.07998 * 120.00368 * 266.24817 * 13 12 11 15 15 C 1.37879 * 119.99771 * 86.24817 * 13 12 11 16 16 N 1.31509 * 119.99829 * 178.51319 * 15 13 12 17 17 Si 1.86807 * 119.99934 * 358.50733 * 15 13 12 18 18 H 1.48502 * 109.46657 * 90.64496 * 17 15 13 19 19 H 1.48495 * 109.46730 * 210.64248 * 17 15 13 20 20 H 1.48497 * 109.46872 * 330.64333 * 17 15 13 21 21 C 1.52996 * 117.49982 * 273.31013 * 12 11 8 22 22 C 1.52992 * 117.50386 * 204.64826 * 12 11 8 23 23 C 1.53007 * 109.47281 * 299.99553 * 5 3 2 24 24 H 1.09003 * 109.46468 * 59.57619 * 23 5 3 25 25 C 1.53003 * 109.47201 * 179.56948 * 23 5 3 26 26 O 1.42899 * 109.47164 * 299.57808 * 23 5 3 27 27 H 1.09002 * 109.46948 * 299.99401 * 1 2 3 28 28 H 1.08993 * 109.47504 * 59.99870 * 1 2 3 29 29 H 1.09001 * 109.46836 * 180.02562 * 1 2 3 30 30 H 0.97002 * 120.00584 * 65.10371 * 7 5 3 31 31 H 1.09002 * 109.47633 * 298.01509 * 11 8 7 32 32 H 1.09007 * 109.47412 * 58.02069 * 11 8 7 33 33 H 0.97008 * 120.00107 * 180.02562 * 16 15 13 34 34 H 1.09005 * 117.49964 * 359.97438 * 21 12 11 35 35 H 1.09002 * 117.50523 * 145.01494 * 21 12 11 36 36 H 1.09002 * 117.49954 * 214.97463 * 22 12 11 37 37 H 1.09002 * 117.49557 * 359.97001 * 22 12 11 38 38 H 1.09002 * 109.46325 * 62.89069 * 25 23 5 39 39 H 1.09000 * 109.47080 * 182.88176 * 25 23 5 40 40 H 1.08994 * 109.47380 * 302.88780 * 25 23 5 41 41 H 0.96704 * 113.99744 * 299.98872 * 26 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9557 0.7810 -0.8908 7 7 3.9815 2.6799 0.0002 8 16 4.8009 3.3018 -1.2977 9 8 5.0147 4.6646 -0.9569 10 8 5.8937 2.4123 -1.4811 11 6 3.6316 3.1667 -2.6779 12 6 4.2611 3.7609 -3.9396 13 6 5.5506 3.1211 -4.3857 14 1 6.4965 3.5344 -4.0686 15 6 5.5226 2.0079 -5.1989 16 7 6.6479 1.4670 -5.6120 17 14 3.8863 1.2680 -5.7135 18 1 3.4424 1.8870 -6.9883 19 1 4.0430 -0.1965 -5.9024 20 1 2.8731 1.5255 -4.6588 21 6 4.1039 5.2658 -4.1661 22 6 3.3149 4.2754 -5.0262 23 6 4.1138 0.5812 1.2484 24 1 3.7984 -0.4622 1.2521 25 6 5.6422 0.6520 1.2424 26 8 3.6112 1.2350 2.4154 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.7803 3.2448 0.7626 31 1 3.3929 2.1173 -2.8507 32 1 2.7192 3.7118 -2.4359 33 1 6.6282 0.6841 -6.1844 34 1 3.5517 5.8326 -3.4165 35 1 4.9329 5.7931 -4.6382 36 1 3.6251 4.1516 -6.0637 37 1 2.2438 4.1903 -4.8424 38 1 5.9578 1.6942 1.2903 39 1 6.0343 0.1136 2.1053 40 1 6.0233 0.1986 0.3274 41 1 3.8539 2.1689 2.4784 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571821678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:34 Heat of formation + Delta-G solvation = -174.440511 kcal Electronic energy + Delta-G solvation = -27356.234333 eV Core-core repulsion = 23365.072015 eV Total energy + Delta-G solvation = -3991.162318 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79813 -38.31464 -37.17780 -36.60588 -36.46724 -35.30197 -34.43391 -32.21862 -30.82737 -28.83464 -28.57197 -26.60964 -25.57839 -22.42119 -21.76708 -21.14251 -19.92933 -18.93115 -18.09436 -17.70637 -17.31697 -16.82695 -16.50574 -16.40386 -15.46540 -15.28269 -15.22863 -14.91421 -14.41004 -14.03568 -13.88671 -13.66300 -13.09459 -12.97579 -12.68376 -12.61107 -12.49509 -12.14492 -11.95515 -11.86443 -11.50734 -11.33440 -11.25609 -11.21071 -10.97424 -10.94178 -10.79388 -10.71783 -10.68055 -10.44296 -10.17785 -9.80836 -9.54094 -9.22247 -8.72596 -8.53525 -6.21714 -4.30396 0.76139 2.01670 2.39651 3.14494 3.16667 3.27344 3.28479 4.07158 4.25998 4.28765 4.29761 4.47673 4.71481 4.73210 4.78296 4.93994 4.99233 5.01366 5.02793 5.10468 5.29673 5.36397 5.58261 5.62627 5.73161 5.91305 5.94322 5.99106 6.13791 6.18564 6.23711 6.38586 6.57466 6.78260 6.83970 7.01118 7.31028 7.53421 7.57162 8.31239 8.83018 9.38971 10.89521 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.005891 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.386965 B = 4751.877575 C = 5206.096920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.455 3.545 4 O -0.493 6.493 5 C 0.128 3.872 6 H 0.141 0.859 7 N -1.109 6.109 8 S 2.613 3.387 9 O -0.961 6.961 10 O -0.922 6.922 11 C -0.577 4.577 12 C 0.001 3.999 13 C -0.512 4.512 14 H 0.088 0.912 15 C 0.092 3.908 16 N -0.878 5.878 17 Si 0.870 3.130 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.259 1.259 21 C -0.176 4.176 22 C -0.184 4.184 23 C 0.107 3.893 24 H 0.123 0.877 25 C -0.185 4.185 26 O -0.557 6.557 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.415 0.585 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.268 0.732 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 -3.649 12.453 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.294 3.706 4 O -0.379 6.379 5 C 0.017 3.983 6 H 0.158 0.842 7 N -0.865 5.865 8 S 2.708 3.292 9 O -0.951 6.951 10 O -0.911 6.911 11 C -0.709 4.709 12 C -0.002 4.002 13 C -0.549 4.549 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.513 5.513 17 Si 0.698 3.302 18 H -0.200 1.200 19 H -0.215 1.215 20 H -0.183 1.183 21 C -0.213 4.213 22 C -0.223 4.223 23 C 0.046 3.954 24 H 0.140 0.860 25 C -0.243 4.243 26 O -0.363 6.363 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.249 0.751 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.482 -3.890 12.353 16.052 hybrid contribution -1.793 0.177 -0.605 1.900 sum -11.275 -3.713 11.748 16.701 Atomic orbital electron populations 1.23285 0.76159 1.03768 1.02618 1.86485 1.23576 1.33097 1.83981 1.24114 0.92168 0.81814 0.72476 1.90655 1.66593 1.36296 1.44342 1.21145 0.87438 0.84984 1.04761 0.84205 1.56123 1.76400 1.16739 1.37223 1.05214 0.75712 0.74133 0.74150 1.93538 1.84707 1.34595 1.82282 1.93625 1.47418 1.65576 1.84511 1.30298 1.14530 1.09848 1.16238 1.18855 0.96850 0.93339 0.91166 1.20338 0.89772 1.12570 1.32181 0.89378 1.24919 0.96041 0.95726 0.94621 1.69882 1.26261 1.21766 1.33406 0.87002 0.85013 0.78123 0.80105 1.19978 1.21542 1.18319 1.23013 1.02734 0.92679 1.02899 1.22986 0.95867 1.06051 0.97426 1.22250 0.94426 0.96900 0.81794 0.85960 1.22489 0.93865 1.03892 1.04030 1.86596 1.78327 1.28227 1.43150 0.91799 0.91825 0.87978 0.75103 0.86189 0.87054 0.92230 0.90116 0.88550 0.88845 0.90686 0.91534 0.91223 0.89674 0.77658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.28 10.46 -39.28 -0.41 -4.69 16 3 C 0.45 6.16 6.98 36.00 0.25 6.41 16 4 O -0.49 -7.63 16.18 -18.74 -0.30 -7.94 16 5 C 0.13 1.62 2.51 -69.08 -0.17 1.45 16 6 H 0.14 1.74 7.66 -51.93 -0.40 1.34 16 7 N -1.11 -15.19 3.96 -5.88 -0.02 -15.21 16 8 S 2.61 48.88 5.02 -107.50 -0.54 48.34 16 9 O -0.96 -19.89 18.08 -57.54 -1.04 -20.93 16 10 O -0.92 -19.94 16.88 -57.54 -0.97 -20.92 16 11 C -0.58 -11.28 5.62 37.16 0.21 -11.07 16 12 C 0.00 0.02 0.86 -155.66 -0.13 -0.12 16 13 C -0.51 -13.85 8.21 -34.44 -0.28 -14.14 16 14 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 15 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 16 N -0.88 -25.87 13.96 55.43 0.77 -25.09 16 17 Si 0.87 20.50 24.96 -169.99 -4.24 16.25 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.26 -5.63 5.59 56.52 0.32 -5.31 16 21 C -0.18 -3.60 9.94 -26.70 -0.27 -3.86 16 22 C -0.18 -3.81 7.68 -26.70 -0.21 -4.02 16 23 C 0.11 1.15 3.38 -26.73 -0.09 1.06 16 24 H 0.12 1.14 8.10 -51.93 -0.42 0.72 16 25 C -0.19 -2.04 9.34 37.16 0.35 -1.70 16 26 O -0.56 -5.99 12.97 -35.23 -0.46 -6.45 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.41 4.71 7.71 -34.47 -0.27 4.45 16 31 H 0.12 2.27 6.35 -51.92 -0.33 1.94 16 32 H 0.11 1.90 8.11 -51.92 -0.42 1.48 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 36 H 0.09 1.99 7.34 -51.93 -0.38 1.61 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.38 3.14 7.71 45.56 0.35 3.49 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -34.97 354.99 -6.53 -41.50 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.29 Total: 11.92 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 0.63 Total: -22.14 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.75 Total: -40.30 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -3.18 Total: -60.92 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.24 Total: 16.25 kcal Atomic # 16 Polarization: 48.88 SS G_CDS: -0.54 Total: 48.34 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.97 -6.53 -41.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571821678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.939 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds