Wall clock time and date at job start Fri Apr 10 2020 14:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34238 * 116.99683 * 2 1 4 4 O 1.20820 * 119.99823 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99719 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47413 * 59.99789 * 5 3 2 7 7 N 1.46500 * 109.46875 * 180.02562 * 5 3 2 8 8 S 1.65603 * 119.99836 * 244.82083 * 7 5 3 9 9 O 1.42100 * 104.27787 * 179.18611 * 8 7 5 10 10 O 1.42094 * 104.27725 * 307.04438 * 8 7 5 11 11 C 1.81393 * 104.44680 * 63.11663 * 8 7 5 12 12 C 1.53004 * 109.47454 * 178.01971 * 11 8 7 13 13 C 1.50704 * 115.54736 * 58.97035 * 12 11 8 14 14 H 1.07998 * 120.00368 * 266.24817 * 13 12 11 15 15 C 1.37879 * 119.99771 * 86.24817 * 13 12 11 16 16 N 1.31509 * 119.99829 * 178.51319 * 15 13 12 17 17 Si 1.86807 * 119.99934 * 358.50733 * 15 13 12 18 18 H 1.48502 * 109.46657 * 90.64496 * 17 15 13 19 19 H 1.48495 * 109.46730 * 210.64248 * 17 15 13 20 20 H 1.48497 * 109.46872 * 330.64333 * 17 15 13 21 21 C 1.52996 * 117.49982 * 273.31013 * 12 11 8 22 22 C 1.52992 * 117.50386 * 204.64826 * 12 11 8 23 23 C 1.53007 * 109.47281 * 299.99553 * 5 3 2 24 24 H 1.09003 * 109.46468 * 59.57619 * 23 5 3 25 25 C 1.53003 * 109.47201 * 179.56948 * 23 5 3 26 26 O 1.42899 * 109.47164 * 299.57808 * 23 5 3 27 27 H 1.09002 * 109.46948 * 299.99401 * 1 2 3 28 28 H 1.08993 * 109.47504 * 59.99870 * 1 2 3 29 29 H 1.09001 * 109.46836 * 180.02562 * 1 2 3 30 30 H 0.97002 * 120.00584 * 65.10371 * 7 5 3 31 31 H 1.09002 * 109.47633 * 298.01509 * 11 8 7 32 32 H 1.09007 * 109.47412 * 58.02069 * 11 8 7 33 33 H 0.97008 * 120.00107 * 180.02562 * 16 15 13 34 34 H 1.09005 * 117.49964 * 359.97438 * 21 12 11 35 35 H 1.09002 * 117.50523 * 145.01494 * 21 12 11 36 36 H 1.09002 * 117.49954 * 214.97463 * 22 12 11 37 37 H 1.09002 * 117.49557 * 359.97001 * 22 12 11 38 38 H 1.09002 * 109.46325 * 62.89069 * 25 23 5 39 39 H 1.09000 * 109.47080 * 182.88176 * 25 23 5 40 40 H 1.08994 * 109.47380 * 302.88780 * 25 23 5 41 41 H 0.96704 * 113.99744 * 299.98872 * 26 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9557 0.7810 -0.8908 7 7 3.9815 2.6799 0.0002 8 16 4.8009 3.3018 -1.2977 9 8 5.0147 4.6646 -0.9569 10 8 5.8937 2.4123 -1.4811 11 6 3.6316 3.1667 -2.6779 12 6 4.2611 3.7609 -3.9396 13 6 5.5506 3.1211 -4.3857 14 1 6.4965 3.5344 -4.0686 15 6 5.5226 2.0079 -5.1989 16 7 6.6479 1.4670 -5.6120 17 14 3.8863 1.2680 -5.7135 18 1 3.4424 1.8870 -6.9883 19 1 4.0430 -0.1965 -5.9024 20 1 2.8731 1.5255 -4.6588 21 6 4.1039 5.2658 -4.1661 22 6 3.3149 4.2754 -5.0262 23 6 4.1138 0.5812 1.2484 24 1 3.7984 -0.4622 1.2521 25 6 5.6422 0.6520 1.2424 26 8 3.6112 1.2350 2.4154 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.7803 3.2448 0.7626 31 1 3.3929 2.1173 -2.8507 32 1 2.7192 3.7118 -2.4359 33 1 6.6282 0.6841 -6.1844 34 1 3.5517 5.8326 -3.4165 35 1 4.9329 5.7931 -4.6382 36 1 3.6251 4.1516 -6.0637 37 1 2.2438 4.1903 -4.8424 38 1 5.9578 1.6942 1.2903 39 1 6.0343 0.1136 2.1053 40 1 6.0233 0.1986 0.3274 41 1 3.8539 2.1689 2.4784 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571821678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:34 Heat of formation + Delta-G solvation = -203.937650 kcal Electronic energy + Delta-G solvation = -27357.513425 eV Core-core repulsion = 23365.072015 eV Total energy + Delta-G solvation = -3992.441410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.78353 -39.23637 -38.88106 -38.04507 -37.57600 -36.88752 -35.48342 -34.29498 -31.78450 -30.20832 -29.64716 -27.61647 -27.46684 -23.39800 -23.31822 -22.13223 -21.52247 -20.49822 -19.18612 -18.91073 -18.60704 -18.31681 -17.70117 -17.37409 -17.00663 -16.91896 -16.31492 -16.26570 -15.66428 -15.45759 -14.94170 -14.85614 -14.66473 -14.50084 -14.11675 -13.91882 -13.44624 -13.28524 -13.22403 -13.03096 -12.92377 -12.92098 -12.83350 -12.69724 -12.42484 -12.23115 -12.11102 -11.90660 -11.80877 -11.74858 -11.69687 -11.55615 -11.02380 -10.74072 -10.69215 -10.22881 -8.31363 -6.45071 -0.71918 1.00482 1.33134 1.34990 1.38767 1.47187 1.93402 2.33465 2.77178 2.98682 3.08686 3.21283 3.29990 3.35422 3.58114 3.70519 3.82476 4.02346 4.14236 4.22896 4.30429 4.30963 4.34291 4.34601 4.44897 4.56616 4.71872 4.80668 4.88540 4.94549 5.05688 5.13804 5.25828 5.34977 5.40440 5.59905 5.80207 6.20114 6.54333 6.62105 6.66574 7.27918 8.84382 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.005891 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.386965 B = 4751.877575 C = 5206.096920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.458 3.542 4 O -0.515 6.515 5 C 0.119 3.881 6 H 0.142 0.858 7 N -1.093 6.093 8 S 2.627 3.373 9 O -0.985 6.985 10 O -0.961 6.961 11 C -0.579 4.579 12 C -0.031 4.031 13 C -0.512 4.512 14 H 0.036 0.964 15 C 0.035 3.965 16 N -0.934 5.934 17 Si 0.925 3.075 18 H -0.265 1.265 19 H -0.289 1.289 20 H -0.224 1.224 21 C -0.172 4.172 22 C -0.172 4.172 23 C 0.117 3.883 24 H 0.141 0.859 25 C -0.187 4.187 26 O -0.562 6.562 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.134 0.866 30 H 0.427 0.573 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.269 0.731 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.411 -4.237 13.463 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.299 3.701 4 O -0.403 6.403 5 C 0.008 3.992 6 H 0.159 0.841 7 N -0.852 5.852 8 S 2.723 3.277 9 O -0.976 6.976 10 O -0.950 6.950 11 C -0.711 4.711 12 C -0.033 4.033 13 C -0.549 4.549 14 H 0.054 0.946 15 C -0.165 4.165 16 N -0.571 5.571 17 Si 0.748 3.252 18 H -0.190 1.190 19 H -0.216 1.216 20 H -0.147 1.147 21 C -0.209 4.209 22 C -0.210 4.210 23 C 0.056 3.944 24 H 0.159 0.841 25 C -0.244 4.244 26 O -0.369 6.369 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.264 0.736 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.128 0.872 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -12.861 -4.451 13.390 19.093 hybrid contribution -0.699 0.396 -0.850 1.170 sum -13.560 -4.055 12.540 18.910 Atomic orbital electron populations 1.23604 0.74468 1.05942 1.02617 1.86477 1.25197 1.32086 1.83454 1.24083 0.92150 0.81981 0.71929 1.90645 1.67058 1.37001 1.45595 1.21407 0.87650 0.84052 1.06049 0.84059 1.55520 1.76044 1.17570 1.36107 1.04472 0.75529 0.73210 0.74507 1.93496 1.85339 1.35957 1.82794 1.93586 1.49684 1.66368 1.85360 1.30224 1.15542 1.10584 1.14712 1.18785 0.96127 0.94882 0.93524 1.20390 0.90181 1.12595 1.31734 0.94575 1.25801 0.99837 0.96189 0.94642 1.70038 1.29099 1.22841 1.35125 0.86108 0.81086 0.77102 0.80906 1.19047 1.21555 1.14677 1.23106 1.02755 0.91709 1.03372 1.23066 0.97271 1.04480 0.96229 1.22246 0.93807 0.97535 0.80829 0.84126 1.22501 0.94395 1.03368 1.04140 1.86584 1.78316 1.29133 1.42887 0.91605 0.92064 0.84819 0.73563 0.85414 0.83836 0.92170 0.87364 0.89593 0.89884 0.87228 0.92565 0.89486 0.91027 0.76571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.36 -7.50 10.46 -51.50 -0.54 -8.04 16 3 C 0.46 11.17 6.98 71.23 0.50 11.67 16 4 O -0.52 -14.52 16.18 21.98 0.36 -14.17 16 5 C 0.12 2.80 2.51 44.25 0.11 2.91 16 6 H 0.14 3.31 7.66 -2.39 -0.02 3.29 16 7 N -1.09 -28.29 3.96 -172.53 -0.68 -28.97 16 8 S 2.63 96.94 5.02 -56.49 -0.28 96.65 16 9 O -0.99 -40.42 18.08 -127.65 -2.31 -42.72 16 10 O -0.96 -42.64 16.88 -127.65 -2.15 -44.79 16 11 C -0.58 -21.23 5.62 71.98 0.40 -20.83 16 12 C -0.03 -1.35 0.86 -52.93 -0.05 -1.39 16 13 C -0.51 -28.43 8.21 25.60 0.21 -28.22 16 14 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 15 C 0.04 1.99 5.47 84.66 0.46 2.46 16 16 N -0.93 -57.16 13.96 21.45 0.30 -56.86 16 17 Si 0.92 41.19 24.96 68.60 1.71 42.90 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 19 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.22 -8.64 5.59 99.48 0.56 -8.08 16 21 C -0.17 -6.73 9.94 30.62 0.30 -6.43 16 22 C -0.17 -6.58 7.68 30.61 0.24 -6.34 16 23 C 0.12 2.26 3.38 30.60 0.10 2.37 16 24 H 0.14 2.24 8.10 -2.39 -0.02 2.22 16 25 C -0.19 -3.93 9.34 71.98 0.67 -3.26 16 26 O -0.56 -10.76 12.97 -148.98 -1.93 -12.69 16 27 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 28 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 29 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.43 8.98 7.71 -96.74 -0.75 8.23 16 31 H 0.13 4.45 6.35 -2.39 -0.02 4.44 16 32 H 0.14 4.31 8.11 -2.39 -0.02 4.29 16 33 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 34 H 0.11 3.62 8.14 -2.38 -0.02 3.60 16 35 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.08 3.35 7.34 -2.39 -0.02 3.33 16 37 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 38 H 0.06 1.28 7.71 -2.39 -0.02 1.27 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.38 5.64 7.71 -74.05 -0.57 5.07 16 Total: -1.00 -77.51 354.99 -1.78 -79.29 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -0.40 Total: 34.87 kcal Atomic # 6 Polarization: -49.62 SS G_CDS: 4.15 Total: -45.47 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -0.38 Total: -85.83 kcal Atomic # 8 Polarization: -115.84 SS G_CDS: -6.58 Total: -122.42 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.71 Total: 42.90 kcal Atomic # 16 Polarization: 96.94 SS G_CDS: -0.28 Total: 96.65 kcal Total: -77.51 -1.78 -79.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571821678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.644 kcal (2) G-P(sol) polarization free energy of solvation -77.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds