Wall clock time and date at job start Fri Apr 10 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99954 * 2 1 4 4 O 1.20819 * 120.00202 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99618 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47601 * 299.99886 * 5 3 2 7 7 N 1.46505 * 109.46917 * 179.97438 * 5 3 2 8 8 S 1.65604 * 119.99773 * 97.09066 * 7 5 3 9 9 O 1.42094 * 104.27809 * 178.81157 * 8 7 5 10 10 O 1.42106 * 104.27885 * 306.67352 * 8 7 5 11 11 C 1.81402 * 104.44666 * 62.74174 * 8 7 5 12 12 C 1.53005 * 109.46697 * 180.94458 * 11 8 7 13 13 C 1.50693 * 115.54956 * 58.60934 * 12 11 8 14 14 H 1.07998 * 120.00016 * 267.46707 * 13 12 11 15 15 C 1.37879 * 120.00181 * 87.47506 * 13 12 11 16 16 N 1.31517 * 120.00169 * 179.52320 * 15 13 12 17 17 Si 1.86795 * 120.00097 * 359.51831 * 15 13 12 18 18 H 1.48495 * 109.47259 * 91.71939 * 17 15 13 19 19 H 1.48498 * 109.47259 * 211.72180 * 17 15 13 20 20 H 1.48504 * 109.47026 * 331.72222 * 17 15 13 21 21 C 1.53000 * 117.49778 * 272.93178 * 12 11 8 22 22 C 1.53005 * 117.49571 * 204.27330 * 12 11 8 23 23 C 1.53003 * 109.47305 * 60.00294 * 5 3 2 24 24 H 1.09005 * 109.47051 * 54.92164 * 23 5 3 25 25 C 1.52996 * 109.47168 * 174.92541 * 23 5 3 26 26 O 1.42896 * 109.46740 * 294.92542 * 23 5 3 27 27 H 1.08994 * 109.46876 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47254 * 300.00036 * 1 2 3 29 29 H 1.09002 * 109.46926 * 60.00410 * 1 2 3 30 30 H 0.96992 * 120.00370 * 277.09299 * 7 5 3 31 31 H 1.08994 * 109.47504 * 300.94386 * 11 8 7 32 32 H 1.08995 * 109.47234 * 60.94779 * 11 8 7 33 33 H 0.96998 * 120.00310 * 179.97438 * 16 15 13 34 34 H 1.08997 * 117.50208 * 0.02562 * 21 12 11 35 35 H 1.09003 * 117.49215 * 145.02375 * 21 12 11 36 36 H 1.09000 * 117.50159 * 214.97743 * 22 12 11 37 37 H 1.09003 * 117.50142 * 359.97438 * 22 12 11 38 38 H 1.08996 * 109.47320 * 63.94600 * 25 23 5 39 39 H 1.08995 * 109.47207 * 183.94698 * 25 23 5 40 40 H 1.09006 * 109.47117 * 303.94023 * 25 23 5 41 41 H 0.96704 * 114.00443 * 299.99495 * 26 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9558 0.7809 0.8908 7 7 3.9818 2.6797 -0.0002 8 16 4.3857 3.4244 1.4228 9 8 4.7553 4.7410 1.0367 10 8 3.2666 3.1957 2.2681 11 6 5.8321 2.5064 2.0193 12 6 6.2914 3.0913 3.3565 13 6 5.2636 3.0794 4.4584 14 1 4.6258 3.9374 4.6113 15 6 5.1375 1.9731 5.2716 16 7 4.2469 1.9663 6.2393 17 14 6.2315 0.4838 4.9989 18 1 7.4519 0.6062 5.8359 19 1 5.4937 -0.7483 5.3766 20 1 6.6187 0.4096 3.5671 21 6 7.2686 4.2678 3.3145 22 6 7.7546 2.8840 3.7529 23 6 4.1139 0.5810 -1.2483 24 1 3.6552 1.0161 -2.1363 25 6 5.6307 0.7701 -1.3132 26 8 3.8098 -0.8140 -1.1901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0202 3.1737 -0.8340 31 1 5.5669 1.4577 2.1534 32 1 6.6392 2.5868 1.2912 33 1 4.1579 1.1879 6.8112 34 1 7.5840 4.6254 2.3343 35 1 7.1683 5.0330 4.0842 36 1 7.9738 2.7395 4.8108 37 1 8.3899 2.3306 3.0613 38 1 6.0955 0.2742 -0.4610 39 1 6.0117 0.3367 -2.2378 40 1 5.8657 1.8342 -1.2869 41 1 4.1869 -1.2672 -0.4236 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571821685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:42 Heat of formation + Delta-G solvation = -170.858976 kcal Electronic energy + Delta-G solvation = -27323.491444 eV Core-core repulsion = 23332.484434 eV Total energy + Delta-G solvation = -3991.007011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55163 -38.15510 -37.21715 -36.53306 -36.33562 -35.19952 -34.73437 -32.21000 -30.49364 -28.74172 -28.64343 -26.52699 -25.58694 -22.54086 -21.81751 -21.09093 -19.88650 -18.86596 -18.01107 -17.58811 -17.17747 -16.66955 -16.31342 -16.18336 -15.73896 -15.27160 -15.18018 -14.94913 -14.38559 -13.94831 -13.84019 -13.60613 -13.08919 -12.84006 -12.76629 -12.69316 -12.47634 -12.24990 -11.95172 -11.84207 -11.47988 -11.26613 -11.21536 -11.16469 -11.00299 -10.74727 -10.70456 -10.67293 -10.62276 -10.45549 -10.16547 -9.77490 -9.49978 -9.24849 -8.72668 -8.54697 -6.20133 -4.29036 0.76120 2.27281 2.65250 3.13936 3.14851 3.24289 3.27034 4.04875 4.18591 4.28442 4.37351 4.47439 4.63955 4.71911 4.81489 4.92900 5.00007 5.00439 5.15721 5.19220 5.25778 5.43450 5.52439 5.56780 5.60643 5.74845 5.81530 5.90411 5.94272 6.07824 6.34168 6.44683 6.54252 6.76532 6.90693 6.98035 7.35025 7.52358 7.85112 8.32106 8.86049 9.39303 10.91367 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.005777 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.825290 B = 4845.558954 C = 5151.349727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.347 6.347 3 C 0.448 3.552 4 O -0.483 6.483 5 C 0.134 3.866 6 H 0.124 0.876 7 N -1.105 6.105 8 S 2.608 3.392 9 O -0.962 6.962 10 O -0.916 6.916 11 C -0.578 4.578 12 C 0.001 3.999 13 C -0.512 4.512 14 H 0.088 0.912 15 C 0.089 3.911 16 N -0.878 5.878 17 Si 0.873 3.127 18 H -0.275 1.275 19 H -0.290 1.290 20 H -0.257 1.257 21 C -0.178 4.178 22 C -0.183 4.183 23 C 0.109 3.891 24 H 0.109 0.891 25 C -0.190 4.190 26 O -0.544 6.544 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.417 0.583 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.267 0.733 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.888 -6.985 -15.731 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.262 6.262 3 C 0.287 3.713 4 O -0.368 6.368 5 C 0.022 3.978 6 H 0.142 0.858 7 N -0.862 5.862 8 S 2.703 3.297 9 O -0.953 6.953 10 O -0.906 6.906 11 C -0.710 4.710 12 C -0.002 4.002 13 C -0.548 4.548 14 H 0.106 0.894 15 C -0.116 4.116 16 N -0.513 5.513 17 Si 0.700 3.300 18 H -0.201 1.201 19 H -0.217 1.217 20 H -0.182 1.182 21 C -0.215 4.215 22 C -0.222 4.222 23 C 0.047 3.953 24 H 0.127 0.873 25 C -0.247 4.247 26 O -0.349 6.349 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.251 0.749 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.730 -6.027 -15.581 16.722 hybrid contribution 1.100 -1.203 0.161 1.638 sum 1.830 -7.230 -15.421 17.130 Atomic orbital electron populations 1.23251 0.76683 1.03458 1.02494 1.86533 1.23011 1.32726 1.83951 1.23984 0.92107 0.81948 0.73260 1.90685 1.66339 1.36374 1.43401 1.21044 0.88509 0.84749 1.03481 0.85829 1.56024 1.82794 1.19072 1.28302 1.05367 0.77237 0.74727 0.72376 1.93533 1.85509 1.34508 1.81711 1.93650 1.47263 1.84834 1.64809 1.30312 1.18737 1.13883 1.08034 1.18845 0.90747 0.98980 0.91601 1.20354 1.17669 1.04175 1.12643 0.89385 1.24962 0.94487 0.97936 0.94213 1.69890 1.33328 1.30185 1.17899 0.86957 0.80841 0.82414 0.79740 1.20073 1.21673 1.18175 1.23037 1.05094 0.91741 1.01628 1.22981 0.98034 0.99994 1.01197 1.22013 0.95415 0.82216 0.95634 0.87304 1.22566 0.94761 1.03821 1.03593 1.86655 1.78469 1.19240 1.50497 0.88205 0.91718 0.92232 0.74879 0.86011 0.87114 0.92256 0.90088 0.88584 0.88893 0.90583 0.91352 0.90819 0.90586 0.77120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.35 -4.83 9.57 -44.44 -0.43 -5.25 16 3 C 0.45 7.08 7.32 36.01 0.26 7.34 16 4 O -0.48 -9.21 16.18 -18.74 -0.30 -9.51 16 5 C 0.13 1.72 2.42 -69.08 -0.17 1.55 16 6 H 0.12 1.47 6.98 -51.93 -0.36 1.11 16 7 N -1.11 -15.50 3.81 -5.88 -0.02 -15.52 16 8 S 2.61 50.43 5.11 -107.50 -0.55 49.88 16 9 O -0.96 -20.29 18.08 -57.54 -1.04 -21.33 16 10 O -0.92 -22.45 16.90 -57.54 -0.97 -23.42 16 11 C -0.58 -10.33 5.54 37.16 0.21 -10.13 16 12 C 0.00 0.02 0.86 -155.66 -0.13 -0.11 16 13 C -0.51 -13.90 8.07 -34.44 -0.28 -14.18 16 14 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 15 C 0.09 2.47 5.47 -17.82 -0.10 2.38 16 16 N -0.88 -26.24 13.96 55.43 0.77 -25.46 16 17 Si 0.87 20.02 24.87 -169.99 -4.23 15.79 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.26 -5.20 5.66 56.52 0.32 -4.88 16 21 C -0.18 -3.48 9.94 -26.69 -0.27 -3.75 16 22 C -0.18 -3.58 7.54 -26.69 -0.20 -3.79 16 23 C 0.11 1.01 3.26 -26.73 -0.09 0.92 16 24 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 25 C -0.19 -1.44 9.39 37.16 0.35 -1.09 16 26 O -0.54 -5.12 12.29 -49.21 -0.60 -5.72 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.42 4.74 8.75 -34.47 -0.30 4.44 16 31 H 0.12 2.02 5.80 -51.93 -0.30 1.72 16 32 H 0.11 1.51 8.11 -51.93 -0.42 1.09 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 36 H 0.09 1.91 7.16 -51.93 -0.37 1.54 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.55 7.29 -51.93 -0.38 0.17 16 41 H 0.38 2.41 9.05 45.56 0.41 2.82 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -37.85 353.75 -6.55 -44.40 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.17 Total: 10.21 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 0.65 Total: -19.39 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.75 Total: -40.99 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -3.35 Total: -65.24 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.23 Total: 15.79 kcal Atomic # 16 Polarization: 50.43 SS G_CDS: -0.55 Total: 49.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.85 -6.55 -44.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571821685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.457 kcal (2) G-P(sol) polarization free energy of solvation -37.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds