Wall clock time and date at job start Fri Apr 10 2020 14:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99954 * 2 1 4 4 O 1.20819 * 120.00202 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99618 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47601 * 299.99886 * 5 3 2 7 7 N 1.46505 * 109.46917 * 179.97438 * 5 3 2 8 8 S 1.65604 * 119.99773 * 97.09066 * 7 5 3 9 9 O 1.42094 * 104.27809 * 178.81157 * 8 7 5 10 10 O 1.42106 * 104.27885 * 306.67352 * 8 7 5 11 11 C 1.81402 * 104.44666 * 62.74174 * 8 7 5 12 12 C 1.53005 * 109.46697 * 180.94458 * 11 8 7 13 13 C 1.50693 * 115.54956 * 58.60934 * 12 11 8 14 14 H 1.07998 * 120.00016 * 267.46707 * 13 12 11 15 15 C 1.37879 * 120.00181 * 87.47506 * 13 12 11 16 16 N 1.31517 * 120.00169 * 179.52320 * 15 13 12 17 17 Si 1.86795 * 120.00097 * 359.51831 * 15 13 12 18 18 H 1.48495 * 109.47259 * 91.71939 * 17 15 13 19 19 H 1.48498 * 109.47259 * 211.72180 * 17 15 13 20 20 H 1.48504 * 109.47026 * 331.72222 * 17 15 13 21 21 C 1.53000 * 117.49778 * 272.93178 * 12 11 8 22 22 C 1.53005 * 117.49571 * 204.27330 * 12 11 8 23 23 C 1.53003 * 109.47305 * 60.00294 * 5 3 2 24 24 H 1.09005 * 109.47051 * 54.92164 * 23 5 3 25 25 C 1.52996 * 109.47168 * 174.92541 * 23 5 3 26 26 O 1.42896 * 109.46740 * 294.92542 * 23 5 3 27 27 H 1.08994 * 109.46876 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47254 * 300.00036 * 1 2 3 29 29 H 1.09002 * 109.46926 * 60.00410 * 1 2 3 30 30 H 0.96992 * 120.00370 * 277.09299 * 7 5 3 31 31 H 1.08994 * 109.47504 * 300.94386 * 11 8 7 32 32 H 1.08995 * 109.47234 * 60.94779 * 11 8 7 33 33 H 0.96998 * 120.00310 * 179.97438 * 16 15 13 34 34 H 1.08997 * 117.50208 * 0.02562 * 21 12 11 35 35 H 1.09003 * 117.49215 * 145.02375 * 21 12 11 36 36 H 1.09000 * 117.50159 * 214.97743 * 22 12 11 37 37 H 1.09003 * 117.50142 * 359.97438 * 22 12 11 38 38 H 1.08996 * 109.47320 * 63.94600 * 25 23 5 39 39 H 1.08995 * 109.47207 * 183.94698 * 25 23 5 40 40 H 1.09006 * 109.47117 * 303.94023 * 25 23 5 41 41 H 0.96704 * 114.00443 * 299.99495 * 26 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9558 0.7809 0.8908 7 7 3.9818 2.6797 -0.0002 8 16 4.3857 3.4244 1.4228 9 8 4.7553 4.7410 1.0367 10 8 3.2666 3.1957 2.2681 11 6 5.8321 2.5064 2.0193 12 6 6.2914 3.0913 3.3565 13 6 5.2636 3.0794 4.4584 14 1 4.6258 3.9374 4.6113 15 6 5.1375 1.9731 5.2716 16 7 4.2469 1.9663 6.2393 17 14 6.2315 0.4838 4.9989 18 1 7.4519 0.6062 5.8359 19 1 5.4937 -0.7483 5.3766 20 1 6.6187 0.4096 3.5671 21 6 7.2686 4.2678 3.3145 22 6 7.7546 2.8840 3.7529 23 6 4.1139 0.5810 -1.2483 24 1 3.6552 1.0161 -2.1363 25 6 5.6307 0.7701 -1.3132 26 8 3.8098 -0.8140 -1.1901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0202 3.1737 -0.8340 31 1 5.5669 1.4577 2.1534 32 1 6.6392 2.5868 1.2912 33 1 4.1579 1.1879 6.8112 34 1 7.5840 4.6254 2.3343 35 1 7.1683 5.0330 4.0842 36 1 7.9738 2.7395 4.8108 37 1 8.3899 2.3306 3.0613 38 1 6.0955 0.2742 -0.4610 39 1 6.0117 0.3367 -2.2378 40 1 5.8657 1.8342 -1.2869 41 1 4.1869 -1.2672 -0.4236 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571821685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:41 Heat of formation + Delta-G solvation = -204.412453 kcal Electronic energy + Delta-G solvation = -27324.946432 eV Core-core repulsion = 23332.484434 eV Total energy + Delta-G solvation = -3992.461999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69375 -38.99821 -38.83756 -38.03372 -37.59557 -36.83323 -35.77354 -34.26617 -31.23950 -30.14726 -29.69062 -27.63548 -27.41557 -23.36248 -23.29403 -22.17811 -21.48354 -20.39929 -19.10490 -18.90110 -18.62242 -18.11118 -17.53671 -17.34621 -16.91156 -16.83753 -16.56482 -16.09790 -15.63505 -15.39333 -14.82216 -14.76868 -14.60979 -14.52096 -14.05553 -13.77815 -13.48391 -13.21244 -13.19128 -12.98105 -12.95600 -12.89772 -12.70519 -12.63628 -12.34613 -12.10316 -12.03267 -11.79625 -11.77893 -11.74445 -11.62279 -11.41869 -10.98573 -10.67501 -10.62491 -10.18477 -8.27886 -6.43370 -0.71134 1.08907 1.37481 1.40586 1.53380 1.56858 1.91300 2.38899 2.82608 3.03480 3.15638 3.22690 3.37066 3.56324 3.59243 3.74887 3.77832 4.11943 4.20333 4.25959 4.29250 4.30822 4.34959 4.40656 4.52610 4.62958 4.67814 4.89079 4.97072 5.01893 5.12582 5.21011 5.32640 5.40256 5.48163 5.62839 5.89797 6.21871 6.67488 6.69379 6.85457 7.29700 8.88915 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.005777 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.825290 B = 4845.558954 C = 5151.349727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.345 6.345 3 C 0.439 3.561 4 O -0.529 6.529 5 C 0.127 3.873 6 H 0.137 0.863 7 N -1.088 6.088 8 S 2.606 3.394 9 O -0.991 6.991 10 O -0.987 6.987 11 C -0.563 4.563 12 C -0.036 4.036 13 C -0.514 4.514 14 H 0.021 0.979 15 C 0.020 3.980 16 N -0.945 5.945 17 Si 0.935 3.065 18 H -0.267 1.267 19 H -0.296 1.296 20 H -0.197 1.197 21 C -0.178 4.178 22 C -0.162 4.162 23 C 0.121 3.879 24 H 0.111 0.889 25 C -0.191 4.191 26 O -0.554 6.554 27 H 0.137 0.863 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.430 0.570 31 H 0.142 0.858 32 H 0.172 0.828 33 H 0.267 0.733 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.650 -9.776 -18.830 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.280 3.720 4 O -0.418 6.418 5 C 0.016 3.984 6 H 0.154 0.846 7 N -0.848 5.848 8 S 2.704 3.296 9 O -0.981 6.981 10 O -0.976 6.976 11 C -0.696 4.696 12 C -0.039 4.039 13 C -0.551 4.551 14 H 0.039 0.961 15 C -0.178 4.178 16 N -0.583 5.583 17 Si 0.757 3.243 18 H -0.192 1.192 19 H -0.223 1.223 20 H -0.119 1.119 21 C -0.215 4.215 22 C -0.200 4.200 23 C 0.060 3.940 24 H 0.129 0.871 25 C -0.248 4.248 26 O -0.360 6.360 27 H 0.155 0.845 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.267 0.733 31 H 0.160 0.840 32 H 0.190 0.810 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.144 0.856 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.492 -8.793 -18.728 21.171 hybrid contribution -0.185 -0.245 1.155 1.195 sum 4.307 -9.038 -17.572 20.224 Atomic orbital electron populations 1.23525 0.75548 1.05703 1.01916 1.86529 1.24237 1.31831 1.83342 1.24785 0.93556 0.81735 0.71908 1.90667 1.67592 1.37785 1.45714 1.21518 0.86582 0.84073 1.06237 0.84571 1.55385 1.82455 1.19874 1.27103 1.05013 0.77313 0.74721 0.72535 1.93480 1.85766 1.36707 1.82153 1.93583 1.50830 1.85776 1.67419 1.30096 1.18842 1.13807 1.06865 1.18767 0.90821 1.02459 0.91832 1.20451 1.17968 1.02006 1.14693 0.96064 1.26089 0.96182 1.02060 0.93516 1.70100 1.36630 1.31536 1.20063 0.85972 0.78370 0.76723 0.83266 1.19188 1.22349 1.11865 1.23145 1.03833 0.91537 1.03001 1.23110 0.95609 0.99596 1.01691 1.21974 0.96820 0.81796 0.93412 0.87097 1.22612 0.92658 1.04531 1.04980 1.86645 1.78990 1.19052 1.51347 0.84526 0.93511 0.91713 0.73283 0.83954 0.80998 0.92438 0.86529 0.90633 0.90383 0.85550 0.89964 0.89502 0.90049 0.75482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.34 -9.30 9.57 -46.43 -0.44 -9.74 16 3 C 0.44 13.73 7.32 71.24 0.52 14.25 16 4 O -0.53 -20.85 16.18 21.99 0.36 -20.50 16 5 C 0.13 2.97 2.42 44.25 0.11 3.08 16 6 H 0.14 2.82 6.98 -2.39 -0.02 2.81 16 7 N -1.09 -28.54 3.81 -172.51 -0.66 -29.19 16 8 S 2.61 99.10 5.11 -56.49 -0.29 98.82 16 9 O -0.99 -41.52 18.08 -127.65 -2.31 -43.83 16 10 O -0.99 -50.79 16.90 -127.65 -2.16 -52.94 16 11 C -0.56 -17.55 5.54 71.98 0.40 -17.15 16 12 C -0.04 -1.49 0.86 -52.93 -0.05 -1.54 16 13 C -0.51 -28.85 8.07 25.60 0.21 -28.64 16 14 H 0.02 1.42 8.06 -2.91 -0.02 1.39 16 15 C 0.02 1.13 5.47 84.65 0.46 1.60 16 16 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 17 Si 0.94 39.38 24.87 68.60 1.71 41.09 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.30 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.20 -6.35 5.66 99.48 0.56 -5.79 16 21 C -0.18 -6.46 9.94 30.62 0.30 -6.16 16 22 C -0.16 -5.48 7.54 30.62 0.23 -5.25 16 23 C 0.12 1.81 3.26 30.59 0.10 1.91 16 24 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 25 C -0.19 -1.83 9.39 71.98 0.68 -1.16 16 26 O -0.55 -8.33 12.29 -135.62 -1.67 -10.00 16 27 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 29 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 30 H 0.43 8.97 8.75 -96.75 -0.85 8.12 16 31 H 0.14 3.89 5.80 -2.39 -0.01 3.87 16 32 H 0.17 3.31 8.11 -2.39 -0.02 3.29 16 33 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 34 H 0.12 3.40 8.14 -2.39 -0.02 3.39 16 35 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.08 2.91 7.16 -2.39 -0.02 2.89 16 37 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 0.72 7.29 -2.38 -0.02 0.70 16 41 H 0.39 3.31 9.05 -74.05 -0.67 2.64 16 Total: -1.00 -92.03 353.75 -1.60 -93.62 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.59 Total: 29.42 kcal Atomic # 6 Polarization: -41.42 SS G_CDS: 4.16 Total: -37.26 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -0.36 Total: -88.67 kcal Atomic # 8 Polarization: -130.79 SS G_CDS: -6.22 Total: -137.01 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.71 Total: 41.09 kcal Atomic # 16 Polarization: 99.10 SS G_CDS: -0.29 Total: 98.82 kcal Total: -92.03 -1.60 -93.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571821685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.792 kcal (2) G-P(sol) polarization free energy of solvation -92.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds