Wall clock time and date at job start Fri Apr 10 2020 14:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00255 * 2 1 4 4 O 1.20825 * 119.99804 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99756 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.51450 * 55.10510 * 5 3 2 7 7 C 1.53300 * 109.51601 * 294.99514 * 5 3 2 8 8 N 1.47145 * 108.38555 * 187.77832 * 7 5 3 9 9 S 1.65608 * 120.97837 * 230.51470 * 8 7 5 10 10 O 1.42105 * 104.27567 * 206.07073 * 9 8 7 11 11 O 1.42099 * 104.27801 * 333.93042 * 9 8 7 12 12 C 1.81397 * 104.44917 * 90.00113 * 9 8 7 13 13 C 1.53002 * 109.47293 * 179.97438 * 12 9 8 14 14 C 1.50702 * 109.47210 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00272 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99776 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99704 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99953 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47011 * 89.99885 * 18 16 14 20 20 H 1.48497 * 109.46958 * 209.99916 * 18 16 14 21 21 H 1.48502 * 109.47133 * 329.99995 * 18 16 14 22 22 C 1.47147 * 118.03962 * 50.78928 * 8 7 5 23 23 C 1.53718 * 108.15954 * 309.16005 * 22 8 7 24 24 H 1.09006 * 109.69399 * 292.53961 * 23 22 8 25 25 C 1.52998 * 109.44062 * 172.37438 * 23 22 8 26 26 O 1.42958 * 109.15041 * 52.53433 * 23 22 8 27 27 H 1.09001 * 109.46828 * 300.00194 * 1 2 3 28 28 H 1.08998 * 109.46865 * 59.99886 * 1 2 3 29 29 H 1.08996 * 109.47047 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.67592 * 68.04979 * 7 5 3 31 31 H 1.09001 * 109.68316 * 307.50571 * 7 5 3 32 32 H 1.09001 * 109.47492 * 299.99928 * 12 9 8 33 33 H 1.09001 * 109.47146 * 59.99771 * 12 9 8 34 34 H 1.09001 * 109.47069 * 300.00526 * 13 12 9 35 35 H 1.09001 * 109.46935 * 59.99981 * 13 12 9 36 36 H 0.97001 * 119.99825 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.67996 * 68.93410 * 22 8 7 38 38 H 1.09001 * 109.68307 * 189.49380 * 22 8 7 39 39 H 1.08993 * 109.47248 * 300.38252 * 25 23 22 40 40 H 1.09000 * 109.47513 * 60.38613 * 25 23 22 41 41 H 1.09009 * 109.46813 * 180.38665 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9610 0.7066 -0.8418 7 6 4.1092 0.6920 1.3105 8 7 5.5567 0.9497 1.3685 9 16 6.6271 -0.2698 1.6998 10 8 7.7478 0.3927 2.2695 11 8 5.8690 -1.2065 2.4529 12 6 7.0509 -0.9542 0.0742 13 6 8.0465 -2.1029 0.2482 14 6 8.3980 -2.6718 -1.1023 15 1 7.9560 -2.2555 -1.9954 16 6 9.2849 -3.7232 -1.1977 17 7 9.5921 -4.2194 -2.3762 18 14 10.0500 -4.4428 0.3470 19 1 9.1902 -5.5393 0.8607 20 1 11.3978 -4.9786 0.0284 21 1 10.1702 -3.3827 1.3800 22 6 6.0247 2.3241 1.1294 23 6 5.3890 2.8263 -0.1769 24 1 5.7910 2.2651 -1.0205 25 6 5.7018 4.3131 -0.3568 26 8 3.9731 2.6407 -0.1111 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9261 -0.3822 1.3381 31 1 3.6169 1.1706 2.1571 32 1 6.1479 -1.3258 -0.4103 33 1 7.4996 -0.1752 -0.5422 34 1 8.9493 -1.7309 0.7325 35 1 7.5981 -2.8819 0.8648 36 1 10.2157 -4.9593 -2.4433 37 1 5.7220 2.9643 1.9580 38 1 7.1108 2.3313 1.0370 39 1 5.3012 4.8735 0.4879 40 1 6.7815 4.4539 -0.4069 41 1 5.2454 4.6714 -1.2796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593645890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:20 Heat of formation + Delta-G solvation = -192.975488 kcal Electronic energy + Delta-G solvation = -26321.267543 eV Core-core repulsion = 22329.301488 eV Total energy + Delta-G solvation = -3991.966054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97071 -39.45555 -36.94973 -36.72159 -35.75494 -35.04922 -34.02249 -33.44017 -31.55335 -29.78035 -27.79294 -26.34642 -26.03777 -24.26898 -21.83248 -21.37339 -20.81220 -18.93587 -18.03812 -17.86971 -17.29454 -17.05388 -16.90533 -16.44525 -16.17261 -15.73614 -15.48006 -14.90270 -14.38162 -14.33285 -14.21365 -13.75244 -13.49929 -13.10121 -12.88329 -12.85879 -12.58114 -12.43042 -12.32341 -12.12157 -11.97996 -11.87455 -11.63771 -11.61900 -11.32421 -11.29573 -11.10927 -11.08668 -10.71036 -10.50804 -10.49280 -10.16726 -9.72878 -9.45533 -8.99108 -8.71207 -6.21435 -4.23277 0.43195 1.83853 1.99163 2.64365 3.22861 3.30576 3.33979 3.54581 4.02775 4.12559 4.26149 4.31314 4.42894 4.46372 4.64443 4.70720 4.83540 4.87943 4.91548 4.96260 5.06869 5.09974 5.25274 5.35848 5.36724 5.43571 5.44343 5.49670 5.65618 5.78765 5.90775 6.00564 6.17840 6.23467 6.67914 6.73184 6.86038 7.43865 7.48646 8.30778 8.79149 9.37968 10.90840 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.003959 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.725758 B = 7070.999908 C = 7733.649214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.472 3.528 4 O -0.483 6.483 5 C 0.087 3.913 6 H 0.108 0.892 7 C 0.104 3.896 8 N -1.008 6.008 9 S 2.584 3.416 10 O -0.957 6.957 11 O -0.957 6.957 12 C -0.582 4.582 13 C -0.006 4.006 14 C -0.521 4.521 15 H 0.078 0.922 16 C 0.073 3.927 17 N -0.894 5.894 18 Si 0.869 3.131 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.262 1.262 22 C 0.090 3.910 23 C 0.073 3.927 24 H 0.074 0.926 25 C -0.143 4.143 26 O -0.352 6.352 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.033 0.967 35 H 0.029 0.971 36 H 0.267 0.733 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.848 13.160 4.507 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.312 3.688 4 O -0.368 6.368 5 C 0.026 3.974 6 H 0.125 0.875 7 C -0.023 4.023 8 N -0.843 5.843 9 S 2.684 3.316 10 O -0.947 6.947 11 O -0.948 6.948 12 C -0.715 4.715 13 C -0.046 4.046 14 C -0.560 4.560 15 H 0.096 0.904 16 C -0.130 4.130 17 N -0.532 5.532 18 Si 0.695 3.305 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.186 1.186 22 C -0.035 4.035 23 C 0.014 3.986 24 H 0.092 0.908 25 C -0.201 4.201 26 O -0.271 6.271 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.823 13.261 5.331 19.883 hybrid contribution 0.280 -0.601 -0.077 0.668 sum -13.543 12.660 5.254 19.269 Atomic orbital electron populations 1.23342 0.75443 1.04161 1.02705 1.86501 1.23976 1.32337 1.84065 1.22942 0.90685 0.81892 0.73290 1.90692 1.66516 1.36253 1.43372 1.21744 0.88222 0.86694 1.00732 0.87455 1.21856 0.80961 1.03185 0.96263 1.58167 1.16325 1.21464 1.88359 1.05991 0.73415 0.73400 0.78830 1.93557 1.51630 1.73451 1.76096 1.93557 1.70263 1.62397 1.68544 1.30362 1.10574 1.11034 1.19566 1.19420 0.93021 0.91493 1.00653 1.20820 1.27092 1.16916 0.91134 0.90385 1.24976 0.95818 0.96134 0.96079 1.69874 1.34573 1.25600 1.23152 0.86937 0.79325 0.80301 0.83964 1.19617 1.20708 1.18638 1.22284 1.00685 0.82443 0.98099 1.22768 0.80314 0.98462 0.97077 0.90758 1.21743 1.02287 0.92592 1.03483 1.87999 1.22806 1.21712 1.94545 0.91662 0.91699 0.87553 0.86640 0.89728 0.85524 0.85548 0.94903 0.95309 0.92316 0.89958 0.87561 0.91348 0.90097 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.67 10.56 -39.24 -0.41 -4.09 16 3 C 0.47 5.63 7.29 36.01 0.26 5.89 16 4 O -0.48 -7.01 16.26 -25.46 -0.41 -7.43 16 5 C 0.09 0.96 3.30 -27.73 -0.09 0.87 16 6 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 7 C 0.10 1.18 5.77 -3.53 -0.02 1.16 16 8 N -1.01 -12.58 3.27 -112.83 -0.37 -12.95 16 9 S 2.58 41.64 5.42 -107.50 -0.58 41.05 16 10 O -0.96 -17.66 16.80 -57.54 -0.97 -18.63 16 11 O -0.96 -17.68 16.81 -57.54 -0.97 -18.65 16 12 C -0.58 -9.91 6.12 37.16 0.23 -9.68 16 13 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 14 C -0.52 -14.04 9.66 -34.44 -0.33 -14.37 16 15 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 18 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 22 C 0.09 0.96 5.82 -3.32 -0.02 0.94 16 23 C 0.07 0.71 3.41 -26.36 -0.09 0.62 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 25 C -0.14 -1.11 9.57 37.16 0.36 -0.75 16 26 O -0.35 -4.19 9.56 -55.11 -0.53 -4.72 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.12 1.25 7.23 -51.93 -0.38 0.87 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.13 1.92 8.14 -51.92 -0.42 1.49 16 33 H 0.13 1.91 8.14 -51.92 -0.42 1.49 16 34 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 35 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.11 1.06 7.22 -51.93 -0.37 0.68 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -35.75 355.06 -7.81 -43.56 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.17 Total: -1.83 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 1.15 Total: -12.29 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.41 Total: -38.61 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -3.29 Total: -53.50 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Atomic # 16 Polarization: 41.64 SS G_CDS: -0.58 Total: 41.05 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.75 -7.81 -43.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593645890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.417 kcal (2) G-P(sol) polarization free energy of solvation -35.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds