Wall clock time and date at job start Fri Apr 10 2020 14:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00255 * 2 1 4 4 O 1.20825 * 119.99804 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99756 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.51450 * 55.10510 * 5 3 2 7 7 C 1.53300 * 109.51601 * 294.99514 * 5 3 2 8 8 N 1.47145 * 108.38555 * 187.77832 * 7 5 3 9 9 S 1.65608 * 120.97837 * 230.51470 * 8 7 5 10 10 O 1.42105 * 104.27567 * 206.07073 * 9 8 7 11 11 O 1.42099 * 104.27801 * 333.93042 * 9 8 7 12 12 C 1.81397 * 104.44917 * 90.00113 * 9 8 7 13 13 C 1.53002 * 109.47293 * 179.97438 * 12 9 8 14 14 C 1.50702 * 109.47210 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00272 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99776 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99704 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99953 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47011 * 89.99885 * 18 16 14 20 20 H 1.48497 * 109.46958 * 209.99916 * 18 16 14 21 21 H 1.48502 * 109.47133 * 329.99995 * 18 16 14 22 22 C 1.47147 * 118.03962 * 50.78928 * 8 7 5 23 23 C 1.53718 * 108.15954 * 309.16005 * 22 8 7 24 24 H 1.09006 * 109.69399 * 292.53961 * 23 22 8 25 25 C 1.52998 * 109.44062 * 172.37438 * 23 22 8 26 26 O 1.42958 * 109.15041 * 52.53433 * 23 22 8 27 27 H 1.09001 * 109.46828 * 300.00194 * 1 2 3 28 28 H 1.08998 * 109.46865 * 59.99886 * 1 2 3 29 29 H 1.08996 * 109.47047 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.67592 * 68.04979 * 7 5 3 31 31 H 1.09001 * 109.68316 * 307.50571 * 7 5 3 32 32 H 1.09001 * 109.47492 * 299.99928 * 12 9 8 33 33 H 1.09001 * 109.47146 * 59.99771 * 12 9 8 34 34 H 1.09001 * 109.47069 * 300.00526 * 13 12 9 35 35 H 1.09001 * 109.46935 * 59.99981 * 13 12 9 36 36 H 0.97001 * 119.99825 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.67996 * 68.93410 * 22 8 7 38 38 H 1.09001 * 109.68307 * 189.49380 * 22 8 7 39 39 H 1.08993 * 109.47248 * 300.38252 * 25 23 22 40 40 H 1.09000 * 109.47513 * 60.38613 * 25 23 22 41 41 H 1.09009 * 109.46813 * 180.38665 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9610 0.7066 -0.8418 7 6 4.1092 0.6920 1.3105 8 7 5.5567 0.9497 1.3685 9 16 6.6271 -0.2698 1.6998 10 8 7.7478 0.3927 2.2695 11 8 5.8690 -1.2065 2.4529 12 6 7.0509 -0.9542 0.0742 13 6 8.0465 -2.1029 0.2482 14 6 8.3980 -2.6718 -1.1023 15 1 7.9560 -2.2555 -1.9954 16 6 9.2849 -3.7232 -1.1977 17 7 9.5921 -4.2194 -2.3762 18 14 10.0500 -4.4428 0.3470 19 1 9.1902 -5.5393 0.8607 20 1 11.3978 -4.9786 0.0284 21 1 10.1702 -3.3827 1.3800 22 6 6.0247 2.3241 1.1294 23 6 5.3890 2.8263 -0.1769 24 1 5.7910 2.2651 -1.0205 25 6 5.7018 4.3131 -0.3568 26 8 3.9731 2.6407 -0.1111 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9261 -0.3822 1.3381 31 1 3.6169 1.1706 2.1571 32 1 6.1479 -1.3258 -0.4103 33 1 7.4996 -0.1752 -0.5422 34 1 8.9493 -1.7309 0.7325 35 1 7.5981 -2.8819 0.8648 36 1 10.2157 -4.9593 -2.4433 37 1 5.7220 2.9643 1.9580 38 1 7.1108 2.3313 1.0370 39 1 5.3012 4.8735 0.4879 40 1 6.7815 4.4539 -0.4069 41 1 5.2454 4.6714 -1.2796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593645890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:19 Heat of formation + Delta-G solvation = -219.254161 kcal Electronic energy + Delta-G solvation = -26322.407071 eV Core-core repulsion = 22329.301488 eV Total energy + Delta-G solvation = -3993.105583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84864 -40.30325 -38.31632 -37.61320 -37.11795 -36.02690 -35.86083 -34.22354 -33.46151 -30.57056 -28.48533 -27.90352 -27.11603 -25.16739 -23.18027 -22.49107 -21.78165 -20.11238 -19.44061 -18.81400 -18.69561 -18.14831 -17.81737 -17.35552 -17.18682 -17.07516 -16.47707 -16.28861 -15.97112 -15.26916 -15.22649 -15.05559 -14.80115 -14.30907 -13.90906 -13.79859 -13.67168 -13.44452 -13.30398 -13.28278 -13.12291 -13.06757 -12.97787 -12.95924 -12.78915 -12.40015 -12.23889 -12.01261 -11.90803 -11.85924 -11.77154 -11.57836 -11.38088 -11.03658 -10.82315 -9.98306 -8.34391 -6.39895 -0.85919 0.92376 1.21376 1.33898 1.36375 1.45367 1.51609 2.31334 2.72399 2.78336 2.99986 3.03269 3.32898 3.48224 3.63579 3.82472 3.88610 3.96226 4.04280 4.12727 4.20662 4.29169 4.31758 4.34440 4.55759 4.58623 4.72354 4.73820 4.81388 4.87291 5.05908 5.06498 5.12092 5.18781 5.25203 5.36353 5.49284 5.90369 6.18689 6.57287 6.66680 7.24694 8.81007 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.003959 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.725758 B = 7070.999908 C = 7733.649214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.476 3.524 4 O -0.515 6.515 5 C 0.086 3.914 6 H 0.125 0.875 7 C 0.100 3.900 8 N -0.999 5.999 9 S 2.613 3.387 10 O -0.979 6.979 11 O -0.980 6.980 12 C -0.587 4.587 13 C -0.017 4.017 14 C -0.524 4.524 15 H 0.052 0.948 16 C 0.015 3.985 17 N -0.940 5.940 18 Si 0.922 3.078 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.248 1.248 22 C 0.083 3.917 23 C 0.069 3.931 24 H 0.083 0.917 25 C -0.141 4.141 26 O -0.368 6.368 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.269 0.731 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.271 13.776 5.552 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.402 6.402 5 C 0.025 3.975 6 H 0.142 0.858 7 C -0.026 4.026 8 N -0.836 5.836 9 S 2.712 3.288 10 O -0.970 6.970 11 O -0.971 6.971 12 C -0.719 4.719 13 C -0.056 4.056 14 C -0.563 4.563 15 H 0.070 0.930 16 C -0.184 4.184 17 N -0.580 5.580 18 Si 0.745 3.255 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.172 1.172 22 C -0.042 4.042 23 C 0.011 3.989 24 H 0.101 0.899 25 C -0.199 4.199 26 O -0.287 6.287 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.152 0.848 30 H 0.139 0.861 31 H 0.109 0.891 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.244 13.865 6.377 20.876 hybrid contribution 0.300 -0.727 -0.460 0.911 sum -13.944 13.138 5.917 20.051 Atomic orbital electron populations 1.23652 0.73822 1.06093 1.02907 1.86499 1.25629 1.31513 1.83519 1.23119 0.90997 0.81811 0.72344 1.90676 1.67222 1.37278 1.45051 1.21824 0.87791 0.86767 1.01102 0.85775 1.21995 0.80001 1.03753 0.96818 1.57816 1.16321 1.21380 1.88127 1.04923 0.72988 0.73163 0.77764 1.93525 1.53104 1.73936 1.76387 1.93524 1.70753 1.63780 1.69019 1.30348 1.10125 1.09864 1.21529 1.19381 0.94654 0.93507 0.98106 1.21160 1.26214 1.16520 0.92447 0.93005 1.25838 0.96675 0.96888 0.98965 1.70002 1.35923 1.26678 1.25388 0.86072 0.78747 0.80102 0.80612 1.18606 1.20165 1.17169 1.22548 1.01331 0.81221 0.99056 1.22954 0.79320 0.99839 0.96802 0.89875 1.21779 1.03520 0.91132 1.03452 1.88001 1.24025 1.22101 1.94582 0.91466 0.91584 0.84787 0.86055 0.89115 0.83806 0.83762 0.94881 0.95020 0.92182 0.89057 0.86758 0.91372 0.88249 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.89 10.56 -51.36 -0.54 -7.43 16 3 C 0.48 10.80 7.29 71.24 0.52 11.32 16 4 O -0.51 -14.60 16.26 28.38 0.46 -14.14 16 5 C 0.09 1.75 3.30 29.95 0.10 1.85 16 6 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 7 C 0.10 2.08 5.77 86.36 0.50 2.58 16 8 N -1.00 -22.73 3.27 -510.87 -1.67 -24.40 16 9 S 2.61 79.01 5.42 -56.49 -0.31 78.71 16 10 O -0.98 -34.24 16.80 -127.65 -2.14 -36.38 16 11 O -0.98 -34.44 16.81 -127.65 -2.15 -36.59 16 12 C -0.59 -18.93 6.12 71.98 0.44 -18.49 16 13 C -0.02 -0.76 4.05 29.85 0.12 -0.64 16 14 C -0.52 -28.31 9.66 25.60 0.25 -28.06 16 15 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 16 C 0.01 0.84 5.47 84.66 0.46 1.30 16 17 N -0.94 -56.41 13.96 21.45 0.30 -56.11 16 18 Si 0.92 42.47 27.47 68.60 1.88 44.35 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 21 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 22 C 0.08 1.57 5.82 86.50 0.50 2.07 16 23 C 0.07 1.20 3.41 30.84 0.11 1.30 16 24 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 25 C -0.14 -1.87 9.57 71.98 0.69 -1.18 16 26 O -0.37 -8.14 9.56 -129.97 -1.24 -9.38 16 27 H 0.07 0.87 8.13 -2.39 -0.02 0.86 16 28 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 29 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.12 2.38 7.23 -2.39 -0.02 2.36 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.14 4.08 8.14 -2.39 -0.02 4.06 16 33 H 0.14 4.07 8.14 -2.39 -0.02 4.05 16 34 H 0.03 1.45 7.20 -2.39 -0.02 1.43 16 35 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 36 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 1.99 7.22 -2.39 -0.02 1.97 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -76.28 355.06 0.44 -75.84 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.97 Total: 11.92 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 4.88 Total: -26.38 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -1.37 Total: -80.52 kcal Atomic # 8 Polarization: -98.31 SS G_CDS: -5.62 Total: -103.92 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.35 kcal Atomic # 16 Polarization: 79.01 SS G_CDS: -0.31 Total: 78.71 kcal Total: -76.28 0.44 -75.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593645890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.414 kcal (2) G-P(sol) polarization free energy of solvation -76.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds