Wall clock time and date at job start Fri Apr 10 2020 14:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.74422 * 2 1 4 4 O 1.43180 * 109.66210 * 120.62395 * 2 1 3 5 5 C 1.36108 * 116.71886 * 73.48252 * 4 2 1 6 6 C 1.38704 * 119.38414 * 197.14841 * 5 4 2 7 7 C 1.38196 * 120.06228 * 180.13865 * 6 5 4 8 8 C 1.38253 * 120.11349 * 0.03522 * 7 6 5 9 9 C 1.38190 * 120.11516 * 359.94266 * 8 7 6 10 10 C 1.38708 * 120.06663 * 359.97197 * 9 8 7 11 11 O 1.36108 * 119.40008 * 180.19687 * 10 9 8 12 12 C 1.43169 * 116.72085 * 197.05794 * 11 10 9 13 13 H 1.09001 * 109.70728 * 73.59936 * 12 11 10 14 14 C 1.50701 * 109.70761 * 194.17979 * 12 11 10 15 15 O 1.20819 * 120.00212 * 4.41862 * 14 12 11 16 16 O 1.34232 * 120.00006 * 184.42410 * 14 12 11 17 17 C 1.45188 * 117.00097 * 180.02562 * 16 14 12 18 18 C 1.50703 * 109.47407 * 179.97438 * 17 16 14 19 19 O 1.21293 * 119.99482 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00290 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99729 * 180.27555 * 20 18 17 22 22 H 1.08002 * 120.00496 * 359.72414 * 21 20 18 23 23 C 1.38958 * 120.00096 * 179.72242 * 21 20 18 24 24 N 1.31414 * 119.99347 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00310 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47201 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47346 * 119.99877 * 25 23 21 28 28 H 1.48506 * 109.46753 * 239.99977 * 25 23 21 29 29 H 1.08996 * 109.46897 * 180.61938 * 1 2 3 30 30 H 1.08999 * 109.46783 * 300.62129 * 1 2 3 31 31 H 1.09000 * 109.46965 * 60.61901 * 1 2 3 32 32 H 1.07997 * 119.97258 * 0.16784 * 6 5 4 33 33 H 1.08010 * 119.94315 * 180.02562 * 7 6 5 34 34 H 1.08007 * 119.94211 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.96737 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.47455 * 59.99491 * 17 16 14 37 37 H 1.09002 * 109.47382 * 299.99782 * 17 16 14 38 38 H 0.97001 * 119.99727 * 359.97438 * 20 18 17 39 39 H 0.97004 * 119.99790 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 8 2.0118 -0.6868 1.1603 5 6 1.8922 -2.0426 1.1625 6 6 1.9968 -2.7331 2.3609 7 6 1.8805 -4.1100 2.3790 8 6 1.6603 -4.8031 1.2031 9 6 1.5547 -4.1212 0.0058 10 6 1.6687 -2.7390 -0.0192 11 8 1.5585 -2.0808 -1.2054 12 6 2.0477 -0.7358 -1.2432 13 1 3.1376 -0.7409 -1.2401 14 6 1.5463 -0.0475 -2.4866 15 8 0.7771 -0.6170 -3.2240 16 8 1.9545 1.1983 -2.7750 17 6 1.4305 1.7994 -3.9883 18 6 1.9949 3.1878 -4.1454 19 8 2.7629 3.6277 -3.3160 20 7 1.6455 3.9412 -5.2069 21 6 2.1634 5.2022 -5.3527 22 1 2.8478 5.5936 -4.6146 23 6 1.8076 5.9768 -6.4501 24 7 0.9752 5.5003 -7.3484 25 14 2.5138 7.6947 -6.6492 26 1 3.4199 7.9923 -5.5109 27 1 3.2750 7.7726 -7.9219 28 1 1.4074 8.6849 -6.6726 29 1 -0.3633 -1.0276 0.0111 30 1 -0.3633 0.5235 0.8844 31 1 -0.3633 0.5042 -0.8955 32 1 2.1688 -2.1942 3.2809 33 1 1.9618 -4.6457 3.3134 34 1 1.5703 -5.8792 1.2204 35 1 1.3823 -4.6649 -0.9113 36 1 0.3436 1.8542 -3.9266 37 1 1.7154 1.1917 -4.8472 38 1 1.0310 3.5896 -5.8700 39 1 0.7266 6.0412 -8.1144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731241023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:10 Heat of formation + Delta-G solvation = -157.188700 kcal Electronic energy + Delta-G solvation = -26458.304376 eV Core-core repulsion = 22332.446202 eV Total energy + Delta-G solvation = -4125.858174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.97676 -40.37421 -38.35808 -37.97193 -37.58242 -36.22828 -34.07849 -33.02932 -31.45318 -31.02557 -29.54111 -29.03751 -27.54252 -24.71339 -24.33627 -23.17515 -22.07753 -20.17104 -19.70260 -19.14303 -18.15701 -18.01490 -17.68301 -17.00953 -16.49651 -16.41220 -15.76909 -15.57559 -15.26816 -14.89926 -14.62975 -14.54989 -14.23991 -14.09962 -13.98412 -13.76431 -13.18127 -12.86464 -12.59184 -12.41589 -12.33307 -12.13902 -11.90883 -11.67669 -11.63157 -11.35361 -11.19847 -10.87827 -10.60732 -10.43823 -10.43090 -10.33863 -9.67762 -8.96296 -8.61685 -8.37665 -8.14884 -6.55747 -3.98016 0.98511 0.99653 1.83531 1.94565 2.71303 3.07750 3.17625 3.21588 3.28688 3.42721 3.65195 3.74251 4.03189 4.23539 4.30406 4.37133 4.67467 4.74484 4.85388 4.89645 4.92889 5.03767 5.08519 5.09832 5.31693 5.37202 5.48489 5.54198 5.57077 5.79163 5.83963 5.88021 5.94307 6.15786 6.31062 6.34273 6.56373 7.08148 7.42738 7.57521 7.87709 8.40993 9.00962 9.32101 9.81154 10.61329 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.038555 B = 0.002337 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.057855 B =11978.063516 C =12373.895470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.063 3.937 3 H 0.151 0.849 4 O -0.293 6.293 5 C 0.051 3.949 6 C -0.113 4.113 7 C -0.116 4.116 8 C -0.117 4.117 9 C -0.110 4.110 10 C 0.054 3.946 11 O -0.281 6.281 12 C 0.068 3.932 13 H 0.126 0.874 14 C 0.471 3.529 15 O -0.481 6.481 16 O -0.318 6.318 17 C 0.062 3.938 18 C 0.437 3.563 19 O -0.575 6.575 20 N -0.550 5.550 21 C -0.303 4.303 22 H 0.107 0.893 23 C 0.025 3.975 24 N -0.895 5.895 25 Si 0.934 3.066 26 H -0.266 1.266 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.395 0.605 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 -17.908 15.548 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.006 3.994 3 H 0.168 0.832 4 O -0.207 6.207 5 C 0.006 3.994 6 C -0.132 4.132 7 C -0.135 4.135 8 C -0.135 4.135 9 C -0.129 4.129 10 C 0.009 3.991 11 O -0.195 6.195 12 C 0.010 3.990 13 H 0.143 0.857 14 C 0.311 3.689 15 O -0.367 6.367 16 O -0.233 6.233 17 C -0.016 4.016 18 C 0.222 3.778 19 O -0.460 6.460 20 N -0.187 5.187 21 C -0.432 4.432 22 H 0.125 0.875 23 C -0.178 4.178 24 N -0.536 5.536 25 Si 0.761 3.239 26 H -0.190 1.190 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.229 0.771 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.752 -17.595 15.634 23.549 hybrid contribution -0.210 0.665 -0.978 1.201 sum -0.961 -16.930 14.655 22.413 Atomic orbital electron populations 1.22363 0.93192 1.03951 1.04275 1.23251 0.96153 0.97576 0.82395 0.83203 1.86449 1.78473 1.15403 1.40398 1.18977 1.03636 0.83327 0.93481 1.20470 1.03056 0.94076 0.95603 1.20943 1.00774 0.93053 0.98682 1.20921 1.00974 1.00121 0.91494 1.20472 1.02705 0.90016 0.99674 1.18956 1.04338 0.92354 0.83483 1.86314 1.79000 1.24287 1.29922 1.22309 1.00903 0.82810 0.92973 0.85706 1.22383 0.79302 0.81144 0.86115 1.90713 1.31809 1.65259 1.48932 1.86493 1.65759 1.27402 1.43645 1.22876 0.99445 0.94799 0.84443 1.19227 0.87264 0.86017 0.85335 1.90572 1.38716 1.73175 1.43491 1.41703 1.41640 1.14474 1.20907 1.19781 1.25505 0.89633 1.08257 0.87478 1.25337 0.96596 1.00533 0.95302 1.69622 1.33352 1.38433 1.12172 0.85729 0.78739 0.80973 0.78499 1.19046 1.20575 1.20578 0.91282 0.89975 0.90397 0.84651 0.85028 0.84973 0.84587 0.89193 0.89132 0.77113 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 8.95 37.16 0.33 -1.72 16 2 C 0.06 0.74 3.52 -26.49 -0.09 0.65 16 3 H 0.15 1.64 8.14 -51.93 -0.42 1.21 16 4 O -0.29 -3.52 10.16 -32.86 -0.33 -3.86 16 5 C 0.05 0.59 6.06 -39.14 -0.24 0.35 16 6 C -0.11 -1.05 9.96 -39.42 -0.39 -1.44 16 7 C -0.12 -0.88 10.04 -39.59 -0.40 -1.27 16 8 C -0.12 -0.91 10.04 -39.59 -0.40 -1.30 16 9 C -0.11 -1.09 9.96 -39.43 -0.39 -1.48 16 10 C 0.05 0.65 5.84 -39.14 -0.23 0.42 16 11 O -0.28 -3.87 9.07 -47.07 -0.43 -4.30 16 12 C 0.07 0.89 3.25 -27.64 -0.09 0.80 16 13 H 0.13 1.44 8.14 -51.93 -0.42 1.01 16 14 C 0.47 7.33 6.08 36.01 0.22 7.55 16 15 O -0.48 -8.48 16.27 -25.42 -0.41 -8.89 16 16 O -0.32 -5.54 9.75 -45.91 -0.45 -5.99 16 17 C 0.06 1.11 5.94 36.01 0.21 1.33 16 18 C 0.44 10.13 7.86 -10.98 -0.09 10.04 16 19 O -0.58 -15.40 16.08 -14.11 -0.23 -15.62 16 20 N -0.55 -13.51 5.29 -10.96 -0.06 -13.56 16 21 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 22 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.03 0.65 5.50 -17.46 -0.10 0.55 16 24 N -0.90 -23.60 13.05 55.50 0.72 -22.87 16 25 Si 0.93 20.34 29.55 -169.99 -5.02 15.31 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 29 H 0.07 0.83 6.87 -51.93 -0.36 0.47 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.93 7.25 -51.93 -0.38 0.56 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 34 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.09 1.46 8.13 -51.93 -0.42 1.03 16 37 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 38 H 0.40 9.19 7.90 -40.82 -0.32 8.87 16 39 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -32.29 343.63 -7.19 -39.48 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.37 Total: 8.96 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -1.79 Total: 6.16 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.67 Total: -36.44 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.85 Total: -38.66 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.29 -7.19 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.706 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds