Wall clock time and date at job start Fri Apr 10 2020 14:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.74422 * 2 1 4 4 O 1.43180 * 109.66210 * 120.62395 * 2 1 3 5 5 C 1.36108 * 116.71886 * 73.48252 * 4 2 1 6 6 C 1.38704 * 119.38414 * 197.14841 * 5 4 2 7 7 C 1.38196 * 120.06228 * 180.13865 * 6 5 4 8 8 C 1.38253 * 120.11349 * 0.03522 * 7 6 5 9 9 C 1.38190 * 120.11516 * 359.94266 * 8 7 6 10 10 C 1.38708 * 120.06663 * 359.97197 * 9 8 7 11 11 O 1.36108 * 119.40008 * 180.19687 * 10 9 8 12 12 C 1.43169 * 116.72085 * 197.05794 * 11 10 9 13 13 H 1.09001 * 109.70728 * 73.59936 * 12 11 10 14 14 C 1.50701 * 109.70761 * 194.17979 * 12 11 10 15 15 O 1.20819 * 120.00212 * 4.41862 * 14 12 11 16 16 O 1.34232 * 120.00006 * 184.42410 * 14 12 11 17 17 C 1.45188 * 117.00097 * 180.02562 * 16 14 12 18 18 C 1.50703 * 109.47407 * 179.97438 * 17 16 14 19 19 O 1.21293 * 119.99482 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00290 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99729 * 180.27555 * 20 18 17 22 22 H 1.08002 * 120.00496 * 359.72414 * 21 20 18 23 23 C 1.38958 * 120.00096 * 179.72242 * 21 20 18 24 24 N 1.31414 * 119.99347 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00310 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47201 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47346 * 119.99877 * 25 23 21 28 28 H 1.48506 * 109.46753 * 239.99977 * 25 23 21 29 29 H 1.08996 * 109.46897 * 180.61938 * 1 2 3 30 30 H 1.08999 * 109.46783 * 300.62129 * 1 2 3 31 31 H 1.09000 * 109.46965 * 60.61901 * 1 2 3 32 32 H 1.07997 * 119.97258 * 0.16784 * 6 5 4 33 33 H 1.08010 * 119.94315 * 180.02562 * 7 6 5 34 34 H 1.08007 * 119.94211 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.96737 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.47455 * 59.99491 * 17 16 14 37 37 H 1.09002 * 109.47382 * 299.99782 * 17 16 14 38 38 H 0.97001 * 119.99727 * 359.97438 * 20 18 17 39 39 H 0.97004 * 119.99790 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 8 2.0118 -0.6868 1.1603 5 6 1.8922 -2.0426 1.1625 6 6 1.9968 -2.7331 2.3609 7 6 1.8805 -4.1100 2.3790 8 6 1.6603 -4.8031 1.2031 9 6 1.5547 -4.1212 0.0058 10 6 1.6687 -2.7390 -0.0192 11 8 1.5585 -2.0808 -1.2054 12 6 2.0477 -0.7358 -1.2432 13 1 3.1376 -0.7409 -1.2401 14 6 1.5463 -0.0475 -2.4866 15 8 0.7771 -0.6170 -3.2240 16 8 1.9545 1.1983 -2.7750 17 6 1.4305 1.7994 -3.9883 18 6 1.9949 3.1878 -4.1454 19 8 2.7629 3.6277 -3.3160 20 7 1.6455 3.9412 -5.2069 21 6 2.1634 5.2022 -5.3527 22 1 2.8478 5.5936 -4.6146 23 6 1.8076 5.9768 -6.4501 24 7 0.9752 5.5003 -7.3484 25 14 2.5138 7.6947 -6.6492 26 1 3.4199 7.9923 -5.5109 27 1 3.2750 7.7726 -7.9219 28 1 1.4074 8.6849 -6.6726 29 1 -0.3633 -1.0276 0.0111 30 1 -0.3633 0.5235 0.8844 31 1 -0.3633 0.5042 -0.8955 32 1 2.1688 -2.1942 3.2809 33 1 1.9618 -4.6457 3.3134 34 1 1.5703 -5.8792 1.2204 35 1 1.3823 -4.6649 -0.9113 36 1 0.3436 1.8542 -3.9266 37 1 1.7154 1.1917 -4.8472 38 1 1.0310 3.5896 -5.8700 39 1 0.7266 6.0412 -8.1144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731241023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:09 Heat of formation + Delta-G solvation = -176.719306 kcal Electronic energy + Delta-G solvation = -26459.151287 eV Core-core repulsion = 22332.446202 eV Total energy + Delta-G solvation = -4126.705085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.91912 -41.63401 -40.09594 -38.80986 -38.55978 -37.60071 -36.06145 -33.95521 -33.43246 -31.76886 -30.45701 -30.29962 -28.74569 -26.58023 -25.21554 -23.94958 -23.19550 -21.50173 -21.10948 -20.15661 -20.00012 -19.20358 -18.68038 -18.15044 -17.79603 -17.62416 -17.24411 -16.64648 -16.51766 -16.15205 -15.78802 -15.75992 -15.48754 -15.42098 -15.02552 -14.84911 -14.55453 -14.04308 -13.87983 -13.66206 -13.57887 -13.39803 -12.99393 -12.96000 -12.74505 -12.47894 -12.40954 -12.20353 -12.11527 -12.03192 -11.92756 -11.60316 -11.45202 -10.55661 -10.13739 -9.68679 -9.16100 -8.54132 -6.04621 0.25718 0.28665 0.65634 0.70682 1.33590 1.43133 1.57273 1.83755 1.84462 2.15328 2.32060 2.71944 2.77355 2.90416 3.11504 3.35686 3.39313 3.47359 3.81204 3.92607 3.94299 4.08490 4.11666 4.17374 4.21099 4.38950 4.41247 4.49538 4.62555 4.81576 4.88916 4.99216 5.14772 5.20399 5.36257 5.50871 5.66085 5.74773 5.86713 6.25198 6.30332 6.46503 7.01110 7.37277 7.90074 8.62957 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.038555 B = 0.002337 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.057855 B =11978.063516 C =12373.895470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.065 3.935 3 H 0.156 0.844 4 O -0.299 6.299 5 C 0.028 3.972 6 C -0.119 4.119 7 C -0.107 4.107 8 C -0.109 4.109 9 C -0.122 4.122 10 C 0.025 3.975 11 O -0.300 6.300 12 C 0.071 3.929 13 H 0.138 0.862 14 C 0.479 3.521 15 O -0.502 6.502 16 O -0.329 6.329 17 C 0.071 3.929 18 C 0.438 3.562 19 O -0.615 6.615 20 N -0.557 5.557 21 C -0.336 4.336 22 H 0.086 0.914 23 C -0.009 4.009 24 N -0.915 5.915 25 Si 0.998 3.002 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.270 1.270 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.150 0.850 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.141 0.859 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.400 0.600 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.027 -19.116 16.690 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.009 3.991 3 H 0.173 0.827 4 O -0.214 6.214 5 C -0.016 4.016 6 C -0.138 4.138 7 C -0.125 4.125 8 C -0.127 4.127 9 C -0.140 4.140 10 C -0.019 4.019 11 O -0.215 6.215 12 C 0.013 3.987 13 H 0.155 0.845 14 C 0.320 3.680 15 O -0.390 6.390 16 O -0.244 6.244 17 C -0.006 4.006 18 C 0.224 3.776 19 O -0.502 6.502 20 N -0.194 5.194 21 C -0.465 4.465 22 H 0.104 0.896 23 C -0.210 4.210 24 N -0.555 5.555 25 Si 0.821 3.179 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.195 1.195 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.168 0.832 33 H 0.184 0.816 34 H 0.182 0.818 35 H 0.159 0.841 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.235 0.765 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.848 -18.833 16.771 25.232 hybrid contribution -0.194 0.884 -1.246 1.540 sum -1.042 -17.949 15.526 23.755 Atomic orbital electron populations 1.22319 0.93032 1.03421 1.04506 1.23245 0.96288 0.97639 0.81973 0.82662 1.86426 1.78803 1.16040 1.40088 1.19278 1.05057 0.83061 0.94249 1.20818 1.02574 0.95052 0.95321 1.21393 0.98613 0.92412 1.00041 1.21341 0.99083 1.01678 0.90586 1.20762 1.02869 0.89384 1.01027 1.19280 1.06332 0.93167 0.83075 1.86262 1.79614 1.24331 1.31298 1.22336 1.01432 0.82999 0.91976 0.84492 1.22784 0.78528 0.80177 0.86487 1.90696 1.32874 1.65506 1.49878 1.86486 1.66117 1.28475 1.43311 1.22665 1.00261 0.91955 0.85712 1.19976 0.86093 0.87490 0.84021 1.90541 1.40361 1.74605 1.44663 1.41735 1.41871 1.14238 1.21549 1.19755 1.26669 0.91216 1.08858 0.89633 1.26134 0.96514 1.03881 0.94481 1.69677 1.33610 1.39760 1.12418 0.84798 0.78203 0.76506 0.78402 1.19489 1.19542 1.19490 0.92168 0.88456 0.91330 0.83221 0.81589 0.81797 0.84140 0.86940 0.87157 0.76517 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.99 8.95 71.98 0.64 -3.34 16 2 C 0.07 1.54 3.52 30.75 0.11 1.65 16 3 H 0.16 3.41 8.14 -2.39 -0.02 3.39 16 4 O -0.30 -7.09 10.16 -82.56 -0.84 -7.92 16 5 C 0.03 0.63 6.06 22.56 0.14 0.76 16 6 C -0.12 -1.97 9.96 22.37 0.22 -1.74 16 7 C -0.11 -1.26 10.04 22.26 0.22 -1.03 16 8 C -0.11 -1.37 10.04 22.26 0.22 -1.15 16 9 C -0.12 -2.27 9.96 22.37 0.22 -2.05 16 10 C 0.03 0.61 5.84 22.56 0.13 0.74 16 11 O -0.30 -8.36 9.07 -68.98 -0.63 -8.98 16 12 C 0.07 1.86 3.25 30.00 0.10 1.96 16 13 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 14 C 0.48 14.94 6.08 71.24 0.43 15.37 16 15 O -0.50 -17.70 16.27 28.36 0.46 -17.24 16 16 O -0.33 -11.45 9.75 -45.09 -0.44 -11.89 16 17 C 0.07 2.54 5.94 71.24 0.42 2.96 16 18 C 0.44 20.59 7.86 87.66 0.69 21.28 16 19 O -0.62 -33.73 16.08 15.73 0.25 -33.48 16 20 N -0.56 -27.78 5.29 -306.98 -1.62 -29.40 16 21 C -0.34 -18.47 9.68 84.04 0.81 -17.65 16 22 H 0.09 5.00 7.16 -2.91 -0.02 4.97 16 23 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 24 N -0.91 -47.86 13.05 21.67 0.28 -47.58 16 25 Si 1.00 41.43 29.55 68.60 2.03 43.46 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 28 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 29 H 0.06 1.46 6.87 -2.39 -0.02 1.45 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 1.66 7.25 -2.39 -0.02 1.64 16 32 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 34 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 35 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 36 H 0.11 3.55 8.13 -2.39 -0.02 3.53 16 37 H 0.11 3.55 8.13 -2.39 -0.02 3.53 16 38 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 39 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -70.16 343.63 4.71 -65.45 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.37 Total: 29.84 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 4.84 Total: 17.74 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -1.34 Total: -76.98 kcal Atomic # 8 Polarization: -78.32 SS G_CDS: -1.19 Total: -79.51 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -70.16 4.71 -65.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.272 kcal (2) G-P(sol) polarization free energy of solvation -70.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds