Wall clock time and date at job start Fri Apr 10 2020 14:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.73802 * 2 1 4 4 O 1.43168 * 109.70975 * 239.39143 * 2 1 3 5 5 C 1.36109 * 116.71575 * 286.48821 * 4 2 1 6 6 C 1.38704 * 119.40154 * 162.81741 * 5 4 2 7 7 C 1.38194 * 120.06844 * 179.78954 * 6 5 4 8 8 C 1.38252 * 120.11250 * 0.06752 * 7 6 5 9 9 C 1.38187 * 120.11212 * 0.02562 * 8 7 6 10 10 C 1.38701 * 120.06980 * 359.97438 * 9 8 7 11 11 O 1.36134 * 119.37654 * 179.75811 * 10 9 8 12 12 C 1.43176 * 116.67492 * 162.90248 * 11 10 9 13 13 H 1.08997 * 109.71298 * 286.49041 * 12 11 10 14 14 C 1.50696 * 109.71050 * 165.90329 * 12 11 10 15 15 O 1.20834 * 119.99886 * 355.58892 * 14 12 11 16 16 O 1.34228 * 120.00739 * 175.59392 * 14 12 11 17 17 C 1.45199 * 117.00617 * 179.97438 * 16 14 12 18 18 C 1.50697 * 109.46942 * 179.97438 * 17 16 14 19 19 O 1.21291 * 120.00763 * 359.72834 * 18 17 16 20 20 N 1.34784 * 119.99774 * 179.97438 * 18 17 16 21 21 C 1.37092 * 119.99968 * 179.72830 * 20 18 17 22 22 H 1.08005 * 120.00127 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00107 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00272 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99631 * 0.02562 * 23 21 20 26 26 H 1.48491 * 109.47423 * 89.99791 * 25 23 21 27 27 H 1.48505 * 109.46968 * 209.99733 * 25 23 21 28 28 H 1.48504 * 109.47133 * 329.99196 * 25 23 21 29 29 H 1.09007 * 109.47245 * 299.39685 * 1 2 3 30 30 H 1.09001 * 109.47147 * 59.40070 * 1 2 3 31 31 H 1.09001 * 109.47146 * 179.40040 * 1 2 3 32 32 H 1.08006 * 119.96699 * 359.84160 * 6 5 4 33 33 H 1.07997 * 119.94493 * 180.02562 * 7 6 5 34 34 H 1.08006 * 119.94211 * 180.02562 * 8 7 6 35 35 H 1.08004 * 119.97005 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.46799 * 60.00124 * 17 16 14 37 37 H 1.08993 * 109.47220 * 299.99875 * 17 16 14 38 38 H 0.97005 * 119.99846 * 359.72750 * 20 18 17 39 39 H 0.97000 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0128 -0.6863 -1.1600 5 6 1.8943 -2.0422 -1.1624 6 6 1.9993 -2.7328 -2.3607 7 6 1.8855 -4.1099 -2.3784 8 6 1.6655 -4.8029 -1.2025 9 6 1.5580 -4.1208 -0.0055 10 6 1.6712 -2.7387 0.0193 11 8 1.5581 -2.0806 1.2057 12 6 2.0476 -0.7356 1.2438 13 1 3.1375 -0.7408 1.2413 14 6 1.5455 -0.0472 2.4868 15 8 0.7757 -0.6166 3.2237 16 8 1.9534 1.1987 2.7753 17 6 1.4285 1.7999 3.9883 18 6 1.9937 3.1880 4.1461 19 8 2.7670 3.6255 3.3204 20 7 1.6438 3.9414 5.2075 21 6 2.1623 5.2020 5.3540 22 1 2.8515 5.5913 4.6191 23 6 1.8011 5.9790 6.4479 24 7 2.2985 7.1872 6.5886 25 14 0.6097 5.3055 7.7193 26 1 1.3679 4.6012 8.7841 27 1 -0.1605 6.4252 8.3180 28 1 -0.3258 4.3548 7.0662 29 1 -0.3634 0.5045 0.8954 30 1 -0.3633 0.5231 -0.8846 31 1 -0.3633 -1.0276 -0.0108 32 1 2.1709 -2.1938 -3.2807 33 1 1.9679 -4.6457 -3.3125 34 1 1.5774 -5.8792 -1.2195 35 1 1.3865 -4.6645 0.9118 36 1 1.7130 1.1923 4.8474 37 1 0.3418 1.8547 3.9259 38 1 1.0251 3.5917 5.8677 39 1 2.0466 7.7294 7.3525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731241026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:17 Heat of formation + Delta-G solvation = -149.626309 kcal Electronic energy + Delta-G solvation = -26517.141977 eV Core-core repulsion = 22391.611732 eV Total energy + Delta-G solvation = -4125.530244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.01812 -40.46395 -38.51629 -38.03338 -37.63483 -36.32836 -34.13995 -33.07272 -31.86590 -31.05858 -29.57420 -29.20537 -27.66714 -24.62241 -24.35008 -23.20154 -22.10612 -20.21881 -19.75171 -19.20049 -18.67913 -18.07427 -17.72024 -17.08813 -16.57299 -16.45357 -15.76933 -15.63060 -15.34347 -15.01194 -14.84902 -14.61176 -14.28215 -14.14609 -13.98617 -13.62369 -13.09899 -12.90819 -12.66490 -12.53788 -12.45204 -12.28949 -12.24190 -11.95719 -11.66909 -11.39222 -11.31684 -10.92993 -10.73197 -10.69181 -10.48498 -10.10271 -9.73891 -8.99216 -8.76199 -8.40926 -8.35564 -6.44541 -3.97872 0.95572 0.96843 1.75758 1.86269 2.67797 2.94342 2.99324 3.07902 3.14335 3.39700 3.46648 3.69626 3.98682 4.10992 4.20885 4.27839 4.63056 4.68888 4.71721 4.81477 4.89684 5.01049 5.04429 5.06708 5.19926 5.27852 5.42276 5.44703 5.50655 5.57478 5.75338 5.81058 5.85017 6.13180 6.20304 6.28280 6.52686 7.04745 7.36654 7.51686 7.94090 8.40901 8.77578 9.23473 9.57544 10.67457 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.035919 B = 0.002460 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.335041 B =11380.728509 C =11805.245069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.063 3.937 3 H 0.151 0.849 4 O -0.292 6.292 5 C 0.051 3.949 6 C -0.113 4.113 7 C -0.116 4.116 8 C -0.117 4.117 9 C -0.110 4.110 10 C 0.053 3.947 11 O -0.281 6.281 12 C 0.068 3.932 13 H 0.126 0.874 14 C 0.472 3.528 15 O -0.481 6.481 16 O -0.317 6.317 17 C 0.059 3.941 18 C 0.446 3.554 19 O -0.557 6.557 20 N -0.577 5.577 21 C -0.309 4.309 22 H 0.123 0.877 23 C 0.046 3.954 24 N -0.872 5.872 25 Si 0.879 3.121 26 H -0.268 1.268 27 H -0.274 1.274 28 H -0.268 1.268 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.373 0.627 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 -22.150 -14.050 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.006 3.994 3 H 0.168 0.832 4 O -0.207 6.207 5 C 0.006 3.994 6 C -0.132 4.132 7 C -0.134 4.134 8 C -0.135 4.135 9 C -0.128 4.128 10 C 0.008 3.992 11 O -0.195 6.195 12 C 0.010 3.990 13 H 0.144 0.856 14 C 0.312 3.688 15 O -0.368 6.368 16 O -0.232 6.232 17 C -0.018 4.018 18 C 0.231 3.769 19 O -0.438 6.438 20 N -0.216 5.216 21 C -0.438 4.438 22 H 0.141 0.859 23 C -0.159 4.159 24 N -0.511 5.511 25 Si 0.705 3.295 26 H -0.194 1.194 27 H -0.199 1.199 28 H -0.193 1.193 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.207 0.793 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.722 -21.711 -14.190 26.203 hybrid contribution -1.038 -0.277 1.478 1.827 sum -4.760 -21.988 -12.712 25.840 Atomic orbital electron populations 1.22364 0.93197 1.03953 1.04268 1.23256 0.96132 0.97607 0.82395 0.83179 1.86454 1.78431 1.15399 1.40369 1.18977 1.03625 0.83319 0.93470 1.20477 1.03011 0.94075 0.95621 1.20946 1.00704 0.93051 0.98697 1.20923 1.00954 1.00133 0.91499 1.20467 1.02697 0.90012 0.99672 1.18954 1.04435 0.92348 0.83456 1.86322 1.78960 1.24248 1.30013 1.22315 1.00950 0.82862 0.92880 0.85622 1.22405 0.79245 0.81031 0.86138 1.90715 1.31817 1.65255 1.48968 1.86501 1.65727 1.27517 1.43428 1.22873 0.99485 0.94672 0.84813 1.19092 0.87094 0.85887 0.84844 1.90614 1.37389 1.72899 1.42932 1.42027 1.42318 1.15577 1.21726 1.19423 1.25963 0.88188 1.10180 0.85933 1.25049 0.97763 0.95476 0.97566 1.69611 1.42830 1.08588 1.30096 0.86679 0.81214 0.79445 0.82166 1.19356 1.19885 1.19350 0.90450 0.89930 0.91277 0.84619 0.85003 0.84960 0.84599 0.88994 0.89069 0.79340 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 8.96 37.16 0.33 -1.63 16 2 C 0.06 0.71 3.51 -26.47 -0.09 0.62 16 3 H 0.15 1.58 8.14 -51.93 -0.42 1.15 16 4 O -0.29 -3.42 10.16 -32.84 -0.33 -3.75 16 5 C 0.05 0.57 6.06 -39.14 -0.24 0.34 16 6 C -0.11 -1.02 9.96 -39.43 -0.39 -1.41 16 7 C -0.12 -0.84 10.04 -39.59 -0.40 -1.24 16 8 C -0.12 -0.87 10.04 -39.60 -0.40 -1.27 16 9 C -0.11 -1.05 9.96 -39.43 -0.39 -1.45 16 10 C 0.05 0.62 5.84 -39.14 -0.23 0.39 16 11 O -0.28 -3.73 9.07 -47.15 -0.43 -4.16 16 12 C 0.07 0.85 3.25 -27.63 -0.09 0.76 16 13 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 14 C 0.47 6.98 6.07 36.00 0.22 7.20 16 15 O -0.48 -8.05 16.27 -25.43 -0.41 -8.47 16 16 O -0.32 -5.24 9.75 -45.90 -0.45 -5.69 16 17 C 0.06 0.99 5.94 36.00 0.21 1.21 16 18 C 0.45 9.88 7.86 -10.98 -0.09 9.79 16 19 O -0.56 -14.67 16.08 -14.11 -0.23 -14.89 16 20 N -0.58 -13.23 5.09 -10.96 -0.06 -13.29 16 21 C -0.31 -8.44 10.16 -14.93 -0.15 -8.60 16 22 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 23 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 24 N -0.87 -24.64 13.96 55.50 0.77 -23.86 16 25 Si 0.88 18.63 27.74 -169.99 -4.71 13.92 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 28 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16 29 H 0.08 0.88 7.25 -51.92 -0.38 0.50 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.80 6.88 -51.93 -0.36 0.44 16 32 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 36 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 37 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 38 H 0.37 7.43 5.76 -40.82 -0.24 7.19 16 39 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -33.36 340.52 -6.84 -40.20 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.33 Total: 9.04 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.80 Total: 5.83 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.72 Total: -37.15 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -1.85 Total: -36.96 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.71 Total: 13.92 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.36 -6.84 -40.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.426 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds