Wall clock time and date at job start Fri Apr 10 2020 14:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.73802 * 2 1 4 4 O 1.43168 * 109.70975 * 239.39143 * 2 1 3 5 5 C 1.36109 * 116.71575 * 286.48821 * 4 2 1 6 6 C 1.38704 * 119.40154 * 162.81741 * 5 4 2 7 7 C 1.38194 * 120.06844 * 179.78954 * 6 5 4 8 8 C 1.38252 * 120.11250 * 0.06752 * 7 6 5 9 9 C 1.38187 * 120.11212 * 0.02562 * 8 7 6 10 10 C 1.38701 * 120.06980 * 359.97438 * 9 8 7 11 11 O 1.36134 * 119.37654 * 179.75811 * 10 9 8 12 12 C 1.43176 * 116.67492 * 162.90248 * 11 10 9 13 13 H 1.08997 * 109.71298 * 286.49041 * 12 11 10 14 14 C 1.50696 * 109.71050 * 165.90329 * 12 11 10 15 15 O 1.20834 * 119.99886 * 355.58892 * 14 12 11 16 16 O 1.34228 * 120.00739 * 175.59392 * 14 12 11 17 17 C 1.45199 * 117.00617 * 179.97438 * 16 14 12 18 18 C 1.50697 * 109.46942 * 179.97438 * 17 16 14 19 19 O 1.21291 * 120.00763 * 359.72834 * 18 17 16 20 20 N 1.34784 * 119.99774 * 179.97438 * 18 17 16 21 21 C 1.37092 * 119.99968 * 179.72830 * 20 18 17 22 22 H 1.08005 * 120.00127 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00107 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00272 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99631 * 0.02562 * 23 21 20 26 26 H 1.48491 * 109.47423 * 89.99791 * 25 23 21 27 27 H 1.48505 * 109.46968 * 209.99733 * 25 23 21 28 28 H 1.48504 * 109.47133 * 329.99196 * 25 23 21 29 29 H 1.09007 * 109.47245 * 299.39685 * 1 2 3 30 30 H 1.09001 * 109.47147 * 59.40070 * 1 2 3 31 31 H 1.09001 * 109.47146 * 179.40040 * 1 2 3 32 32 H 1.08006 * 119.96699 * 359.84160 * 6 5 4 33 33 H 1.07997 * 119.94493 * 180.02562 * 7 6 5 34 34 H 1.08006 * 119.94211 * 180.02562 * 8 7 6 35 35 H 1.08004 * 119.97005 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.46799 * 60.00124 * 17 16 14 37 37 H 1.08993 * 109.47220 * 299.99875 * 17 16 14 38 38 H 0.97005 * 119.99846 * 359.72750 * 20 18 17 39 39 H 0.97000 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0128 -0.6863 -1.1600 5 6 1.8943 -2.0422 -1.1624 6 6 1.9993 -2.7328 -2.3607 7 6 1.8855 -4.1099 -2.3784 8 6 1.6655 -4.8029 -1.2025 9 6 1.5580 -4.1208 -0.0055 10 6 1.6712 -2.7387 0.0193 11 8 1.5581 -2.0806 1.2057 12 6 2.0476 -0.7356 1.2438 13 1 3.1375 -0.7408 1.2413 14 6 1.5455 -0.0472 2.4868 15 8 0.7757 -0.6166 3.2237 16 8 1.9534 1.1987 2.7753 17 6 1.4285 1.7999 3.9883 18 6 1.9937 3.1880 4.1461 19 8 2.7670 3.6255 3.3204 20 7 1.6438 3.9414 5.2075 21 6 2.1623 5.2020 5.3540 22 1 2.8515 5.5913 4.6191 23 6 1.8011 5.9790 6.4479 24 7 2.2985 7.1872 6.5886 25 14 0.6097 5.3055 7.7193 26 1 1.3679 4.6012 8.7841 27 1 -0.1605 6.4252 8.3180 28 1 -0.3258 4.3548 7.0662 29 1 -0.3634 0.5045 0.8954 30 1 -0.3633 0.5231 -0.8846 31 1 -0.3633 -1.0276 -0.0108 32 1 2.1709 -2.1938 -3.2807 33 1 1.9679 -4.6457 -3.3125 34 1 1.5774 -5.8792 -1.2195 35 1 1.3865 -4.6645 0.9118 36 1 1.7130 1.1923 4.8474 37 1 0.3418 1.8547 3.9259 38 1 1.0251 3.5917 5.8677 39 1 2.0466 7.7294 7.3525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731241026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:17 Heat of formation + Delta-G solvation = -171.308362 kcal Electronic energy + Delta-G solvation = -26518.082181 eV Core-core repulsion = 22391.611732 eV Total energy + Delta-G solvation = -4126.470449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.91600 -41.65216 -40.23434 -38.81381 -38.56065 -37.60746 -36.11215 -33.97488 -33.85591 -31.77039 -30.57218 -30.30760 -28.79276 -26.44365 -25.20823 -23.94327 -23.16755 -21.58492 -21.10961 -20.58678 -20.03093 -19.19958 -18.67098 -18.16911 -17.77766 -17.62897 -17.27365 -16.79563 -16.55623 -16.18025 -15.80502 -15.57160 -15.48736 -15.35723 -14.97624 -14.81925 -14.61613 -14.24900 -14.08254 -13.92893 -13.67194 -13.39480 -13.02276 -12.99251 -12.74306 -12.47104 -12.40913 -12.20071 -12.03960 -12.01278 -11.92241 -11.60599 -11.44969 -10.65127 -10.35940 -9.68675 -9.16121 -8.47186 -6.10549 0.25672 0.28700 0.64586 0.70209 1.29334 1.32824 1.43373 1.72716 1.84731 2.16444 2.19756 2.66207 2.72405 2.82961 3.07016 3.32647 3.39285 3.47231 3.80202 3.83695 3.93069 4.03831 4.07181 4.11702 4.21284 4.39176 4.41236 4.49894 4.62900 4.81557 4.89117 4.96932 5.14645 5.20434 5.45076 5.50962 5.65824 5.74946 5.83697 6.25047 6.29867 6.47975 6.75339 7.23419 7.74398 8.69150 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.035919 B = 0.002460 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.335041 B =11380.728509 C =11805.245069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.064 3.936 3 H 0.155 0.845 4 O -0.300 6.300 5 C 0.028 3.972 6 C -0.120 4.120 7 C -0.107 4.107 8 C -0.109 4.109 9 C -0.121 4.121 10 C 0.026 3.974 11 O -0.298 6.298 12 C 0.069 3.931 13 H 0.137 0.863 14 C 0.481 3.519 15 O -0.499 6.499 16 O -0.331 6.331 17 C 0.067 3.933 18 C 0.449 3.551 19 O -0.606 6.606 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.062 0.938 23 C -0.008 4.008 24 N -0.924 5.924 25 Si 0.960 3.040 26 H -0.256 1.256 27 H -0.273 1.273 28 H -0.230 1.230 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.149 0.851 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.393 0.607 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.786 -25.359 -14.153 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.007 3.993 3 H 0.172 0.828 4 O -0.215 6.215 5 C -0.016 4.016 6 C -0.139 4.139 7 C -0.125 4.125 8 C -0.127 4.127 9 C -0.140 4.140 10 C -0.018 4.018 11 O -0.213 6.213 12 C 0.011 3.989 13 H 0.154 0.846 14 C 0.323 3.677 15 O -0.386 6.386 16 O -0.246 6.246 17 C -0.010 4.010 18 C 0.236 3.764 19 O -0.490 6.490 20 N -0.216 5.216 21 C -0.461 4.461 22 H 0.080 0.920 23 C -0.208 4.208 24 N -0.564 5.564 25 Si 0.780 3.220 26 H -0.180 1.180 27 H -0.198 1.198 28 H -0.154 1.154 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.167 0.833 33 H 0.183 0.817 34 H 0.182 0.818 35 H 0.160 0.840 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.230 0.770 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.491 -24.954 -14.310 29.285 hybrid contribution -0.398 0.641 1.337 1.536 sum -5.889 -24.313 -12.972 28.179 Atomic orbital electron populations 1.22319 0.92927 1.03446 1.04562 1.23259 0.96356 0.97624 0.82022 0.82784 1.86428 1.78789 1.16057 1.40195 1.19274 1.05038 0.83053 0.94256 1.20815 1.02635 0.95061 0.95355 1.21385 0.98635 0.92405 1.00058 1.21340 0.99093 1.01679 0.90612 1.20760 1.02802 0.89384 1.01011 1.19267 1.06320 0.93149 0.83072 1.86271 1.79529 1.24300 1.31249 1.22343 1.01434 0.83031 0.92066 0.84580 1.22701 0.78538 0.80091 0.86414 1.90698 1.32736 1.65443 1.49767 1.86494 1.66173 1.28546 1.43382 1.22748 1.00693 0.91315 0.86216 1.20052 0.85476 0.87521 0.83334 1.90595 1.39366 1.74558 1.44519 1.41800 1.42801 1.14295 1.22736 1.18996 1.26578 0.90573 1.09976 0.91964 1.26090 0.99629 0.95324 0.99739 1.69779 1.44685 1.10510 1.31384 0.85432 0.78644 0.79480 0.78471 1.18000 1.19755 1.15358 0.91083 0.88602 0.92138 0.83327 0.81674 0.81810 0.84036 0.86104 0.85968 0.77049 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 8.96 71.98 0.64 -3.10 16 2 C 0.06 1.45 3.51 30.76 0.11 1.55 16 3 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 4 O -0.30 -6.94 10.16 -82.59 -0.84 -7.78 16 5 C 0.03 0.61 6.06 22.56 0.14 0.75 16 6 C -0.12 -1.93 9.96 22.37 0.22 -1.71 16 7 C -0.11 -1.21 10.04 22.26 0.22 -0.99 16 8 C -0.11 -1.31 10.04 22.26 0.22 -1.08 16 9 C -0.12 -2.14 9.96 22.37 0.22 -1.92 16 10 C 0.03 0.59 5.84 22.56 0.13 0.72 16 11 O -0.30 -7.87 9.07 -69.28 -0.63 -8.50 16 12 C 0.07 1.72 3.25 30.01 0.10 1.82 16 13 H 0.14 3.00 8.14 -2.39 -0.02 2.98 16 14 C 0.48 13.84 6.07 71.23 0.43 14.28 16 15 O -0.50 -16.04 16.27 28.32 0.46 -15.58 16 16 O -0.33 -10.66 9.75 -45.04 -0.44 -11.10 16 17 C 0.07 2.12 5.94 71.24 0.42 2.55 16 18 C 0.45 19.89 7.86 87.65 0.69 20.57 16 19 O -0.61 -33.08 16.08 15.73 0.25 -32.83 16 20 N -0.57 -26.14 5.09 -306.97 -1.56 -27.71 16 21 C -0.33 -18.82 10.16 84.04 0.85 -17.96 16 22 H 0.06 4.19 7.39 -2.91 -0.02 4.17 16 23 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 24 N -0.92 -53.92 13.96 21.66 0.30 -53.62 16 25 Si 0.96 37.19 27.74 68.60 1.90 39.09 16 26 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 27 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 28 H -0.23 -7.46 6.52 99.48 0.65 -6.81 16 29 H 0.07 1.58 7.25 -2.38 -0.02 1.57 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.39 6.88 -2.39 -0.02 1.37 16 32 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.12 3.21 8.13 -2.39 -0.02 3.19 16 37 H 0.12 3.19 8.13 -2.39 -0.02 3.17 16 38 H 0.39 14.60 5.76 -92.70 -0.53 14.07 16 39 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -77.26 340.52 4.84 -72.42 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.51 Total: 30.06 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 4.88 Total: 15.53 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -1.26 Total: -81.32 kcal Atomic # 8 Polarization: -74.59 SS G_CDS: -1.19 Total: -75.78 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 1.90 Total: 39.09 kcal Total: -77.26 4.84 -72.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.887 kcal (2) G-P(sol) polarization free energy of solvation -77.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds