Wall clock time and date at job start Fri Apr 10 2020 14:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47708 * 2 1 4 4 O 1.42901 * 109.47161 * 119.99572 * 2 1 3 5 5 C 1.42900 * 114.00155 * 270.00192 * 4 2 1 6 6 C 1.52996 * 109.47319 * 179.97438 * 5 4 2 7 7 H 1.09000 * 110.27723 * 54.30070 * 6 5 4 8 8 C 1.54945 * 110.31147 * 176.39018 * 6 5 4 9 9 C 1.55417 * 100.89586 * 155.29018 * 8 6 5 10 10 C 1.54383 * 102.30567 * 325.99198 * 9 8 6 11 11 O 1.43236 * 107.59021 * 21.28645 * 10 9 8 12 12 C 1.50697 * 109.47608 * 239.99373 * 2 1 3 13 13 O 1.21283 * 120.00521 * 244.72998 * 12 2 1 14 14 N 1.34784 * 119.99774 * 65.00104 * 12 2 1 15 15 S 1.65594 * 120.00243 * 179.72904 * 14 12 2 16 16 O 1.42092 * 104.27761 * 181.07072 * 15 14 12 17 17 O 1.42109 * 104.27643 * 308.92904 * 15 14 12 18 18 C 1.81403 * 104.45166 * 64.99818 * 15 14 12 19 19 C 1.50695 * 109.47268 * 180.02562 * 18 15 14 20 20 H 1.08001 * 120.00312 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99998 * 179.97438 * 19 18 15 22 22 N 1.31509 * 120.00060 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99972 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46673 * 60.00144 * 23 21 19 25 25 H 1.48493 * 109.47165 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47011 * 300.00458 * 23 21 19 27 27 H 1.09009 * 109.46776 * 60.00318 * 1 2 3 28 28 H 1.08997 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47307 * 300.00606 * 1 2 3 30 30 H 1.08995 * 109.46898 * 299.99833 * 5 4 2 31 31 H 1.09002 * 109.47176 * 59.99659 * 5 4 2 32 32 H 1.09008 * 111.12414 * 273.27849 * 8 6 5 33 33 H 1.08994 * 111.12540 * 37.44060 * 8 6 5 34 34 H 1.09000 * 110.88298 * 207.75407 * 9 8 6 35 35 H 1.09004 * 110.93290 * 84.24798 * 9 8 6 36 36 H 1.09005 * 109.83064 * 261.76828 * 10 9 8 37 37 H 1.09002 * 109.90547 * 140.84439 * 10 9 8 38 38 H 0.97005 * 119.99846 * 359.72750 * 14 12 2 39 39 H 1.09006 * 109.46794 * 300.00584 * 18 15 14 40 40 H 1.09001 * 109.46954 * 60.00159 * 18 15 14 41 41 H 0.96999 * 120.00542 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1831 2.2941 6 6 2.7078 -0.6405 3.4792 7 1 3.6004 -1.1987 3.1966 8 6 3.0110 0.2833 4.6857 9 6 2.8594 -0.7161 5.8663 10 6 1.7355 -1.6487 5.3657 11 8 1.6839 -1.5371 3.9387 12 6 2.0324 -0.7105 -1.2303 13 8 2.6573 -1.7442 -1.1211 14 7 1.7920 -0.1943 -2.4520 15 16 2.3499 -0.9715 -3.8037 16 8 1.9385 -0.1406 -4.8804 17 8 3.7274 -1.1953 -3.5358 18 6 1.4431 -2.5424 -3.8294 19 6 1.8697 -3.3491 -5.0285 20 1 2.6124 -2.9564 -5.7072 21 6 1.3126 -4.5892 -5.2588 22 7 0.4086 -5.0677 -4.4322 23 14 1.8410 -5.5889 -6.7457 24 1 3.2990 -5.8595 -6.6674 25 1 1.0988 -6.8749 -6.7667 26 1 1.5448 -4.8267 -7.9852 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 2.9319 0.9514 2.0450 31 1 1.2537 0.6548 2.5588 32 1 4.0251 0.6794 4.6321 33 1 2.2799 1.0885 4.7573 34 1 2.5574 -0.1987 6.7769 35 1 3.7828 -1.2727 6.0263 36 1 0.7818 -1.3421 5.7954 37 1 1.9543 -2.6784 5.6485 38 1 1.2922 0.6324 -2.5394 39 1 1.6600 -3.1020 -2.9194 40 1 0.3730 -2.3432 -3.8870 41 1 0.0164 -5.9399 -4.5944 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:22 Heat of formation + Delta-G solvation = -207.101465 kcal Electronic energy + Delta-G solvation = -25490.425773 eV Core-core repulsion = 21497.847170 eV Total energy + Delta-G solvation = -3992.578603 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.15481 -39.61632 -37.57167 -36.21912 -35.16086 -34.22369 -33.31794 -32.53134 -31.91360 -30.21271 -29.02565 -25.92002 -24.61593 -23.47796 -22.03366 -21.56180 -21.07978 -19.27110 -17.78847 -17.53644 -17.18983 -16.70095 -16.28662 -16.12503 -15.64756 -15.44183 -15.23215 -14.73625 -14.47108 -14.40586 -14.15869 -13.65803 -13.51821 -12.76297 -12.60379 -12.50380 -12.35153 -12.14467 -12.08138 -11.90921 -11.72058 -11.57179 -11.44649 -11.37751 -11.28303 -11.18389 -11.12154 -10.85794 -10.63372 -10.46639 -10.11208 -9.85257 -9.70384 -9.53958 -9.13401 -8.66739 -6.29052 -4.40621 1.03104 2.39425 2.90238 3.27270 3.29400 3.33993 3.47659 3.58676 4.10190 4.22939 4.32596 4.48689 4.57464 4.61595 4.69096 4.79565 4.83901 4.91342 5.00708 5.03625 5.11941 5.19460 5.20715 5.27021 5.31301 5.41866 5.43104 5.52821 5.54975 5.63478 5.80144 6.02294 6.59109 6.75175 6.80683 6.90212 7.06925 7.44644 7.76548 7.82901 8.60281 9.26534 10.82674 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.002971 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.825632 B = 9423.074038 C =10227.735827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.071 3.929 3 H 0.091 0.909 4 O -0.346 6.346 5 C 0.061 3.939 6 C 0.083 3.917 7 H 0.083 0.917 8 C -0.149 4.149 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.367 6.367 12 C 0.531 3.469 13 O -0.462 6.462 14 N -1.059 6.059 15 S 2.554 3.446 16 O -0.968 6.968 17 O -0.952 6.952 18 C -0.403 4.403 19 C -0.536 4.536 20 H 0.070 0.930 21 C 0.078 3.922 22 N -0.876 5.876 23 Si 0.907 3.093 24 H -0.269 1.269 25 H -0.282 1.282 26 H -0.269 1.269 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.423 0.577 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.581 14.026 19.522 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.008 3.992 3 H 0.109 0.891 4 O -0.264 6.264 5 C -0.016 4.016 6 C 0.025 3.975 7 H 0.101 0.899 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.029 4.029 11 O -0.287 6.287 12 C 0.315 3.685 13 O -0.330 6.330 14 N -0.820 5.820 15 S 2.656 3.344 16 O -0.959 6.959 17 O -0.943 6.943 18 C -0.540 4.540 19 C -0.576 4.576 20 H 0.088 0.912 21 C -0.129 4.129 22 N -0.512 5.512 23 Si 0.732 3.268 24 H -0.194 1.194 25 H -0.207 1.207 26 H -0.194 1.194 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.257 0.743 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.347 13.185 19.004 23.132 hybrid contribution -0.469 -0.029 -0.254 0.534 sum -0.121 13.156 18.750 22.905 Atomic orbital electron populations 1.22257 0.92880 1.04780 1.03214 1.21974 0.95680 0.96169 0.85372 0.89107 1.88149 1.86417 1.33425 1.18379 1.22785 1.00247 0.92616 0.85977 1.22989 0.91781 0.90298 0.92417 0.89877 1.23265 1.03305 0.98372 0.93748 1.23132 0.99849 0.97478 0.98821 1.23141 0.98418 0.99593 0.81786 1.88564 1.54246 1.65881 1.19977 1.20251 0.78558 0.85350 0.84381 1.90939 1.34883 1.21338 1.85824 1.55513 1.66240 1.37724 1.22507 1.07152 0.76605 0.78782 0.71857 1.93517 1.83996 1.67591 1.50819 1.93532 1.31483 1.86413 1.82823 1.27592 1.08073 1.10945 1.07366 1.20239 1.26151 1.03305 1.07863 0.91190 1.24920 0.94096 0.96876 0.97013 1.69946 1.26213 1.18723 1.36303 0.86399 0.79348 0.79014 0.81996 1.19365 1.20678 1.19433 0.90612 0.90255 0.90945 0.91733 0.92256 0.89424 0.90073 0.89919 0.90299 0.91392 0.91313 0.74278 0.88287 0.89644 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.48 37.16 0.35 -1.42 16 2 C 0.07 0.89 3.13 -27.89 -0.09 0.81 16 3 H 0.09 0.79 7.79 -51.93 -0.40 0.38 16 4 O -0.35 -5.06 9.52 -57.80 -0.55 -5.61 16 5 C 0.06 0.61 5.45 37.16 0.20 0.82 16 6 C 0.08 0.85 3.72 -25.71 -0.10 0.75 16 7 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 8 C -0.15 -0.96 6.58 -24.42 -0.16 -1.12 16 9 C -0.16 -0.95 7.02 -24.72 -0.17 -1.12 16 10 C 0.05 0.40 7.80 37.88 0.30 0.70 16 11 O -0.37 -4.60 11.04 -35.96 -0.40 -5.00 16 12 C 0.53 9.19 6.92 -10.98 -0.08 9.11 16 13 O -0.46 -10.39 14.61 -22.94 -0.34 -10.72 16 14 N -1.06 -17.01 5.57 31.22 0.17 -16.84 16 15 S 2.55 55.90 5.03 -107.50 -0.54 55.36 16 16 O -0.97 -22.05 18.08 -57.54 -1.04 -23.09 16 17 O -0.95 -24.08 17.04 -64.79 -1.10 -25.18 16 18 C -0.40 -10.22 5.64 36.00 0.20 -10.01 16 19 C -0.54 -15.26 9.13 -34.44 -0.31 -15.58 16 20 H 0.07 1.93 7.71 -52.49 -0.40 1.53 16 21 C 0.08 2.20 5.46 -17.82 -0.10 2.11 16 22 N -0.88 -25.53 13.29 55.43 0.74 -24.79 16 23 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.08 0.60 7.92 -51.92 -0.41 0.19 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 30 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.06 0.50 7.87 -51.93 -0.41 0.10 16 32 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.08 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.42 4.70 8.56 -34.47 -0.30 4.41 16 39 H 0.10 2.66 7.19 -51.92 -0.37 2.29 16 40 H 0.09 2.07 8.14 -51.92 -0.42 1.65 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -38.93 359.85 -8.67 -47.60 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.06 Total: 1.36 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 0.05 Total: -14.96 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.91 Total: -41.63 kcal Atomic # 8 Polarization: -66.17 SS G_CDS: -3.43 Total: -69.59 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 55.90 SS G_CDS: -0.54 Total: 55.36 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.93 -8.67 -47.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.502 kcal (2) G-P(sol) polarization free energy of solvation -38.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds